IGEM:MIT/2008/Notebook/Yogurt/sequences

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(New page: ==Primers== Include sequence, usage, temperatures, concentration, start date. ==Plasmids== Include sequence, BioBrick #, functional features, digestion map. ==PCR Products== Include se...)
(Primers)
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Include sequence, usage, temperatures, concentration, start date.
Include sequence, usage, temperatures, concentration, start date.
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====P1: Forward Primer for Promoter====
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[[Image:forward_prom.jpg]]
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**foward sequence: TAA TAC GAG TCA CTA TAG GGA ATT AAA GAG GAG AAA ATG TAC GTC TTC TTT TTT AGG CGT GCG GTA AAC TTG TTT CAC CGA CTT AAT CGG CGT CGT GAC GAG GAT AGT CGC TCA GGT GAC CGC CCT TGA AA
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**length = 131 bp
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**melting temp = 71.4 C
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**GC content % = 45.0
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====P2: Reverse Primer for Peptide====
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[[Image:reverse_pep.jpg]]
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**reverse sequence: AAA AGT TCT TCT CCT TTA CGC ATA GAA CCA CCA CCA CCC TGG A
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**length = 43 bp
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**melting temp = 67.3 C
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**GC content % = 46.5
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====TEV Protease cut site====
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* Amino Acid Sequence : Glu-Asn-Leu-Tyr-Phe-Gln-Gly (Cuts between Gln-Gly)
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* Base Pair Sequence: GAAAACCTGTACTTCCAGGGT
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====P3: Forward Primer for GFP====
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forward sequence: GAA AAC CTG TAC TTC CAG GGT GGT GGT GGT TCT GGT GGT GGT TCT GGT GGT GGT TCT TAC GCA TTT CCT CTT CTT
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**includes TEV cut site, half of linker, and 20 bp of GFP
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**length = 76 bp
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**melting temp = 72 C
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**GC content % = 51.3
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====P4: Reverse Primer for GFP====
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[[Image:reversegfp.jpg]]
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**reverse sequence: CTG CAG CGG CCG CTA CTA GTA TTA TTA AGA GAT GTG AGA GAT GTG AGA GAT GTG AGA GAT GTG AGA GAT GTG AGA GAT GTG TTT GTA TAG TTC ATC
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**length = 96 bp
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**melting temp = 69.3 C
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**GC content % = 42.7
==Plasmids==
==Plasmids==

Revision as of 16:02, 16 June 2008

Contents

Primers

Include sequence, usage, temperatures, concentration, start date.

P1: Forward Primer for Promoter

Image:forward_prom.jpg

    • foward sequence: TAA TAC GAG TCA CTA TAG GGA ATT AAA GAG GAG AAA ATG TAC GTC TTC TTT TTT AGG CGT GCG GTA AAC TTG TTT CAC CGA CTT AAT CGG CGT CGT GAC GAG GAT AGT CGC TCA GGT GAC CGC CCT TGA AA
    • length = 131 bp
    • melting temp = 71.4 C
    • GC content % = 45.0

P2: Reverse Primer for Peptide

Image:reverse_pep.jpg

    • reverse sequence: AAA AGT TCT TCT CCT TTA CGC ATA GAA CCA CCA CCA CCC TGG A
    • length = 43 bp
    • melting temp = 67.3 C
    • GC content % = 46.5

TEV Protease cut site

  • Amino Acid Sequence : Glu-Asn-Leu-Tyr-Phe-Gln-Gly (Cuts between Gln-Gly)
  • Base Pair Sequence: GAAAACCTGTACTTCCAGGGT

P3: Forward Primer for GFP

forward sequence: GAA AAC CTG TAC TTC CAG GGT GGT GGT GGT TCT GGT GGT GGT TCT GGT GGT GGT TCT TAC GCA TTT CCT CTT CTT

    • includes TEV cut site, half of linker, and 20 bp of GFP
    • length = 76 bp
    • melting temp = 72 C
    • GC content % = 51.3

P4: Reverse Primer for GFP

Image:reversegfp.jpg

    • reverse sequence: CTG CAG CGG CCG CTA CTA GTA TTA TTA AGA GAT GTG AGA GAT GTG AGA GAT GTG AGA GAT GTG AGA GAT GTG AGA GAT GTG TTT GTA TAG TTC ATC
    • length = 96 bp
    • melting temp = 69.3 C
    • GC content % = 42.7

Plasmids

Include sequence, BioBrick #, functional features, digestion map.


PCR Products

Include sequence, template and primers, functional features.

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