IGEM:Peking/2007/Count-Conjugation-Notebook/2007-8-16: Difference between revisions
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=Tandem OriT by Qu Mingzhi= | =Tandem OriT by Qu Mingzhi= | ||
==Amplification Culture of | ==Amplification Culture of R-OriT & S-OriT(T-vector)== | ||
*select Positive OriT- | *select Positive R-OriT & S-OriT Colonies from Plate,Culture in liquid LB,waiting for mini-prep. | ||
==mini-prep E0240== | ==mini-prep E0240== | ||
Line 28: | Line 28: | ||
[[Image:Peking_2007-8-16_E0240@E-P.jpg]] | [[Image:Peking_2007-8-16_E0240@E-P.jpg]] | ||
==Double digesting test for PlacI-I741051 | ==Double digesting test for PlacI-I741051, R0010, E0240== | ||
*use Double digesting test for gel extraction. | *use Double digesting test for gel extraction. | ||
Line 65: | Line 65: | ||
===electrophoresis result before gel extraction=== | ===electrophoresis result before gel extraction=== | ||
*from ''left'' to ''right'': | *from ''left'' to ''right'': | ||
**1-2 PlacI-I741051 @ SpeI/PstI | |||
**3-4 R0010 @ SpeI/PstI | |||
**5-8 E0240 @ PstI/XbaI | |||
**9 Marker(DL2000 plus) | |||
[[Image:Peking_2007-8-16_R0010_PlacI-I741051_E0240片段3-4.jpg]] | [[Image:Peking_2007-8-16_R0010_PlacI-I741051_E0240片段3-4.jpg]] | ||
===electrophoresis result after gel extraction=== | ===electrophoresis result after gel extraction=== | ||
*from ''left'' to ''right'': | *from ''left'' to ''right'': | ||
#PlacI-I741051 | |||
#R0010 | |||
#pSB1A2 | |||
#pSB1A2 | |||
[[Image:Peking_2007-8-17_PlacI-I74051,R0010,E0240.jpg]] | [[Image:Peking_2007-8-17_PlacI-I74051,R0010,E0240.jpg]] | ||
Line 88: | Line 96: | ||
==transformation PlacI-I741051 <- E0240 & R0010 <- E0240== | ==transformation PlacI-I741051 <- E0240 & R0010 <- E0240== | ||
*NEXT DAY: Received clones...R0010 <- E0240 shows green GFP!. | *NEXT DAY: Received clones...R0010 <- E0240 shows green GFP!. | ||
=Lock & Key By Yu Tao= | |||
===Transformation Result: Efficiency Test of Competent Cells III=== | |||
*Result as expected. | |||
<pre> | |||
| Competent Cells II | Competent Cells III | Competent Cells III | |||
------------------------------------------------------------------------------------------------ | |||
R0010 | 1 uL | 1 uL | 0 uL | |||
------------------------------------------------------------------------------------------------ | |||
ddH2O | 0 uL | 0 uL | 1 uL | |||
------------------------------------------------------------------------------------------------ | |||
antibiotics resistency test | Amp | Amp | Amp/Kan,respectively | |||
------------------------------------------------------------------------------------------------ | |||
Number of clones | hundreds | thousands | none for both Amp/Kan | |||
</pre> | |||
===Transformation Result: R0040.J01010->E0040.B0015 and R0010.J01008<-B0015=== | |||
*Only colonies in R0010.J01008<-B0015 experimental plate grow. | |||
*Select probable positive colonies from the experimental plate, culture them in liquid LB overnight for mini-prep. | |||
*We need to retry the R0040.J01010->E0040.B0015. | |||
==R0040.J01010 Digestion Product Purification== | |||
*Use Transgen Quick Gel Extraction Kit. | |||
*Unfortunately, Qu just extracted the wrong band. As below: | |||
*from ''left'' to ''right'': | |||
#DL2000 plus marker | |||
#Digestion Product before purified. | |||
[[Image:Example.jpg]] | |||
*Qu extracted the larger(higher) band, but I need the smaller(lower) band. Do not matter, we can do it again. | |||
==Double Digestion: R0040.J01010== | |||
*The third time now. | |||
*Digesting R0040.J01010 with EcoRI/SpeI, system components see previous record. | |||
*37℃ overnight. | |||
==Ligation and transformation: pEASY-T3<-J01008== | |||
*Retry the ligation. | |||
*Use the pEASY-T3 clone vector. | |||
*Transform the ligation product into DH5a competent cells. | |||
*Result to be seen tonight. | |||
===Transformation Result=== | |||
*Some clones grow. | |||
*Select probable positive colonies from the experimental plate, culture them in liquid LB overnight for mini-prep. |
Latest revision as of 07:34, 29 August 2007
Tandem OriT by Qu Mingzhi
Amplification Culture of R-OriT & S-OriT(T-vector)
- select Positive R-OriT & S-OriT Colonies from Plate,Culture in liquid LB,waiting for mini-prep.
mini-prep E0240
- using Transgen mini plasmid puriflication kit.
- 50µL after purflication.
mini-prep double digesting test
- Digesting E0240 with EcoRI/PstI.
- E0240 Digestion system contains:
1 µl 10*H 0.25 µl EcoRI 0.25 µl PstI 5 µl Plasmid 3.5 µl dH20 -------------------------- 40 µl Total
electrophoresis result
- from left to right:
- E0240 -1 @ EcoRI/PstI
- E0240 -2 @ EcoRI/PstI
- pSB1A2
- Maker(DL2000 plus)
Double digesting test for PlacI-I741051, R0010, E0240
- use Double digesting test for gel extraction.
- PlacI-I74051 digestion system contains(Standard Assembly vector):
4 µl 10*H buffer 1 µl SpeI 1 µl PstI 20 µl Plasmid 14 µl dH20 -------------------------- 40 µl Total
- R0010 digestion system contains(Standard Assembly vector):
4 µl 10*H buffer 1 µl SpeI 1 µl PstI 20 µl Plasmid 14 µl dH20 -------------------------- 40 µl Total
- E0240 digestion system contains(Standard Assembly vector):
4 µl 10*M buffer 1 µl XbaI 1 µl PstI 20 µl Plasmid 14 µl dH20 -------------------------- 40 µl Total
electrophoresis result before gel extraction
- from left to right:
- 1-2 PlacI-I741051 @ SpeI/PstI
- 3-4 R0010 @ SpeI/PstI
- 5-8 E0240 @ PstI/XbaI
- 9 Marker(DL2000 plus)
electrophoresis result after gel extraction
- from left to right:
- PlacI-I741051
- R0010
- pSB1A2
- pSB1A2
Ligation: PlacI-I741051 <- E0240 & R0010 <- E0240
- Ligate the E0240 fragment and PlacI-I741051 vector .
- Ligate the E0240 fragment and R0010 vector .
- use super fast T4 DNA ligase
- super fast T4 DNA ligase Ligation system contains:
2 µl vector 3 µl E0240 fragment 0.5 µl ''super fast T4 DNA ligase'' 1 µl 10X T4 ligase buffer 3.5 µl dH20 -------------------------- 10 µl Total
transformation PlacI-I741051 <- E0240 & R0010 <- E0240
- NEXT DAY: Received clones...R0010 <- E0240 shows green GFP!.
Lock & Key By Yu Tao
Transformation Result: Efficiency Test of Competent Cells III
- Result as expected.
| Competent Cells II | Competent Cells III | Competent Cells III ------------------------------------------------------------------------------------------------ R0010 | 1 uL | 1 uL | 0 uL ------------------------------------------------------------------------------------------------ ddH2O | 0 uL | 0 uL | 1 uL ------------------------------------------------------------------------------------------------ antibiotics resistency test | Amp | Amp | Amp/Kan,respectively ------------------------------------------------------------------------------------------------ Number of clones | hundreds | thousands | none for both Amp/Kan
Transformation Result: R0040.J01010->E0040.B0015 and R0010.J01008<-B0015
- Only colonies in R0010.J01008<-B0015 experimental plate grow.
- Select probable positive colonies from the experimental plate, culture them in liquid LB overnight for mini-prep.
- We need to retry the R0040.J01010->E0040.B0015.
R0040.J01010 Digestion Product Purification
- Use Transgen Quick Gel Extraction Kit.
- Unfortunately, Qu just extracted the wrong band. As below:
- from left to right:
- DL2000 plus marker
- Digestion Product before purified.
- Qu extracted the larger(higher) band, but I need the smaller(lower) band. Do not matter, we can do it again.
Double Digestion: R0040.J01010
- The third time now.
- Digesting R0040.J01010 with EcoRI/SpeI, system components see previous record.
- 37℃ overnight.
Ligation and transformation: pEASY-T3<-J01008
- Retry the ligation.
- Use the pEASY-T3 clone vector.
- Transform the ligation product into DH5a competent cells.
- Result to be seen tonight.
Transformation Result
- Some clones grow.
- Select probable positive colonies from the experimental plate, culture them in liquid LB overnight for mini-prep.