IGEM:Peking/2007/Count-Conjugation-Notebook/2007-8-20

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(electrophoresis result)
Current revision (01:26, 31 August 2007) (view source)
 
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**4-5 PlacI-I741051-E0240 @ EcoRI/PstI
**4-5 PlacI-I741051-E0240 @ EcoRI/PstI
[[Image:Peking_2007-8-20_PlacI-E0240_PlacI-I741051-E0240.jpg‎ ]]
[[Image:Peking_2007-8-20_PlacI-E0240_PlacI-I741051-E0240.jpg‎ ]]
 +
 +
 +
=Lock & Key By Yu Tao=
 +
==Mini-prep: R0010<-J01008(1-6) and R0040.J01010->E0040.B0015(1-3)==
 +
*Using Transgen mini plasmid purification kit.
 +
*50uL per tube after purification, 2 tubes per type of plasmids.
 +
===Mini-prep Double Digesting Test Result===
 +
*Digesting all plasmids above, R0010, E0040.B0015 and E0040 with EcoRI/PstI.
 +
*Each digestion system contains:
 +
<pre>
 +
1 µl      10*H buffer
 +
0.25 µl    EcoRI
 +
0.25 µl    PstI
 +
3 µl      Plasmid
 +
5.5 µl    ddH20
 +
--------------------------
 +
10 µl      Total
 +
</pre>
 +
*37℃ culutre for 3 hours.
 +
*from ''left'' to ''right'':
 +
#R0010<-J01008-1 @ EcoRI/PstI
 +
#R0010<-J01008-2 @ EcoRI/PstI
 +
#R0010<-J01008-3 @ EcoRI/PstI
 +
#R0010<-J01008-4 @ EcoRI/PstI
 +
#R0010<-J01008-5 @ EcoRI/PstI
 +
#R0010<-J01008-6 @ EcoRI/PstI
 +
#R0010 @ EcoRI/PstI
 +
#R0040.J01010->E0040.B0015-1 @ EcoRI/PstI
 +
#R0040.J01010->E0040.B0015-2 @ EcoRI/PstI
 +
#R0040.J01010->E0040.B0015-3 @ EcoRI/PstI
 +
#E0040.B0015 @ EcoRI/PstI
 +
#E0040 @ EcoRI/PstI
 +
#marker (DL2000 Plus)
 +
[[Image:Example.jpg]]
 +
*Conclusion:
 +
#R0040.J01010.E0040.B0015 makes it.
 +
#R0010<-J01008 fails.
 +
*Stripe the R0040.J01010.E0040.B0015-2 on Kan+ LB plate for storage.
 +
 +
==Sequencing==
 +
*Send the following precultures to Invitrogen for sequencing.
 +
7.  E0040.B0015 pSB3K3
 +
8.  I74051 pSB1A2 (Qu)
 +
9.  R-oriT pSB1A2 (Qu)
 +
10. S-oriT pSB1A2 (Qu)
 +
11. R0040.J01010 pSB1A2
 +
12. T-J01010 pEASY-T3
 +
13. T-J01008 pEASY-T3
 +
*Use vf2 and vr primer for pSB plasmids and T7 primer for T3 plasmids.
 +
 +
==Ligation: R0010<-J01008-2-1,2==
 +
*Ligate the J01008-2-1 and 2 fragment and R0010 vector
 +
*Ligation system contains:
 +
<pre>
 +
3 µl      R0040.J01010 fragment
 +
0.5 µl    E0040.B0015 vector
 +
0.5 µl    Super T4-Ligase
 +
1 µl      10 X ligation buffer
 +
5 µl      ddH20
 +
--------------------------
 +
10 µl      Total
 +
</pre>
 +
 +
*The negative control group contains no fragment but ddH2O instead.
 +
*10min at 16℃。
 +
==Transformation: ==
 +
*Transform all ligation products into 100 µl DH5α competent cells.
 +
*Culture all cells at Amp+ LB plate for 12 hours.
 +
*Result to be seen tomorrow.

Current revision

Contents

Tandem OriT by Qu Mingzhi & Ren Ze

Preparation of Competent Cells: F+, R751

  • Preparation F+, R751 competent cell for Conjugation test.

Comptent Cells efficiency test

  • Transformation test
Competent Cell/plasmid      transformation growth

F+/- (Nagetive control)             -
F+/Ori-T_pSB1A2                    50+
F+/R0010(Postive control)          100+
-----------------------------------------------
R751/-(Nagetive control)            -
R751/pSC101                        10+
R751/R0010(Postive control)        50+

mini-prep PlacI-I741051-E0240_pSB1A2, R0010-E0240_pSB1A2 (II)

  • last mini-prep digesting test didn't show the correct backbone.
  • see:IGEM:Peking/2007/Count-Conjugation-Notebook/2007-8-18
  • Amplification Culture of PlacI-I741051-E0240_pSB1A2, R0010-E0240_pSB1A2 from plates.
  • using Transgen mini plasmid puriflication kit.
  • 50µL after purflication.

mini-prep double digesting test

  • Digesting PlacI-I741051-E0240_pSB1A2, R0010-E0240_pSB1A2 with EcoRI/PstI.
  • Digestion system contains:
1    µl      10*H
0.25 µl      EcoRI
0.25 µl      PstI
5    µl      Plasmid
3.5  µl      dH20
--------------------------
40   µl      Total

electrophoresis result

  • from left to right:
    • 1 Marker(DL2000 plus)
    • 2-3 PlacI-E0240 @ EcoRI/PstI
    • 4-5 PlacI-I741051-E0240 @ EcoRI/PstI

Image:Peking_2007-8-20_PlacI-E0240_PlacI-I741051-E0240.jpg‎


Lock & Key By Yu Tao

Mini-prep: R0010<-J01008(1-6) and R0040.J01010->E0040.B0015(1-3)

  • Using Transgen mini plasmid purification kit.
  • 50uL per tube after purification, 2 tubes per type of plasmids.

Mini-prep Double Digesting Test Result

  • Digesting all plasmids above, R0010, E0040.B0015 and E0040 with EcoRI/PstI.
  • Each digestion system contains:
1 µl       10*H buffer
0.25 µl    EcoRI
0.25 µl    PstI
3 µl       Plasmid
5.5 µl     ddH20
--------------------------
10 µl      Total
  • 37℃ culutre for 3 hours.
  • from left to right:
  1. R0010<-J01008-1 @ EcoRI/PstI
  2. R0010<-J01008-2 @ EcoRI/PstI
  3. R0010<-J01008-3 @ EcoRI/PstI
  4. R0010<-J01008-4 @ EcoRI/PstI
  5. R0010<-J01008-5 @ EcoRI/PstI
  6. R0010<-J01008-6 @ EcoRI/PstI
  7. R0010 @ EcoRI/PstI
  8. R0040.J01010->E0040.B0015-1 @ EcoRI/PstI
  9. R0040.J01010->E0040.B0015-2 @ EcoRI/PstI
  10. R0040.J01010->E0040.B0015-3 @ EcoRI/PstI
  11. E0040.B0015 @ EcoRI/PstI
  12. E0040 @ EcoRI/PstI
  13. marker (DL2000 Plus)

Image:Example.jpg

  • Conclusion:
  1. R0040.J01010.E0040.B0015 makes it.
  2. R0010<-J01008 fails.
  • Stripe the R0040.J01010.E0040.B0015-2 on Kan+ LB plate for storage.

Sequencing

  • Send the following precultures to Invitrogen for sequencing.

7. E0040.B0015 pSB3K3 8. I74051 pSB1A2 (Qu) 9. R-oriT pSB1A2 (Qu) 10. S-oriT pSB1A2 (Qu) 11. R0040.J01010 pSB1A2 12. T-J01010 pEASY-T3 13. T-J01008 pEASY-T3

  • Use vf2 and vr primer for pSB plasmids and T7 primer for T3 plasmids.

Ligation: R0010<-J01008-2-1,2

  • Ligate the J01008-2-1 and 2 fragment and R0010 vector
  • Ligation system contains:
3 µl       R0040.J01010 fragment
0.5 µl     E0040.B0015 vector
0.5 µl     Super T4-Ligase
1 µl       10 X ligation buffer
5 µl       ddH20
--------------------------
10 µl      Total
  • The negative control group contains no fragment but ddH2O instead.
  • 10min at 16℃。

Transformation:

  • Transform all ligation products into 100 µl DH5α competent cells.
  • Culture all cells at Amp+ LB plate for 12 hours.
  • Result to be seen tomorrow.
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