IGEM:Peking University/2008/Related Papers

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(Gal4)
Current revision (13:29, 29 October 2008) (view source)
(AID related)
 
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#Chaudhuri, J., C. Khuong, and F.W. Alt, ''Replication protein A interacts with AID to promote deamination of somatic hypermutation targets.'' Nature, 2004. '''430'''(7003): p. 992-8. [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Replication+protein+A+interacts+with+AID+to+promote+deamination+of+somatic+hypermutation+targets PubMed]<br>
#Chaudhuri, J., C. Khuong, and F.W. Alt, ''Replication protein A interacts with AID to promote deamination of somatic hypermutation targets.'' Nature, 2004. '''430'''(7003): p. 992-8. [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=Replication+protein+A+interacts+with+AID+to+promote+deamination+of+somatic+hypermutation+targets PubMed]<br>
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#Prochnow, C., et al., ''The APOBEC-2 crystal structure and functional implications for the deaminase AID.'' Nature, 2007. '''445'''(7126): p. 447-51. [http://www.ncbi.nlm.nih.gov/sites/entrez PubMed]<br>
+
#Prochnow, C., et al., ''The APOBEC-2 crystal structure and functional implications for the deaminase AID.'' Nature, 2007. '''445'''(7126): p. 447-51. [http://www.ncbi.nlm.nih.gov/pubmed/17187054?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVMedline PubMed]<br>
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#Mayorov, V.I., et al., ''Expression of human AID in yeast induces mutations in context similar to the context of somatic hypermutation at G-C pairs in immunoglobulin genes.'' BMC Immunol, 2005. '''6'''(1): p. 10. [http://www.ncbi.nlm.nih.gov/pubmed/15949042?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum PubMed]
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#Mayorov, V.I., et al., ''Expression of human AID in yeast induces mutations in context similar to the context of somatic hypermutation at G-C pairs in immunoglobulin genes.'' BMC Immunol, 2005. '''6'''(1): p. 10. [http://www.ncbi.nlm.nih.gov/pubmed/15949042?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum PubMed]<br>
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#Kotani, A., et al., ''A target selection of somatic hypermutations is regulated similarly between T and B cells upon activation-induced cytidine deaminase expression.'' Proc Natl Acad Sci U S A, 2005. '''102'''(12): p. 4506-11.[http://www.ncbi.nlm.nih.gov/pubmed/15767564?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVMedline PubMed]<br>
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#Gomez-Gonzalez, B. and A. Aguilera, ''Activation-induced cytidine deaminase action is strongly stimulated by mutations of the THO complex.'' Proc Natl Acad Sci U S A, 2007. '''104'''(20): p. 8409-14.[http://www.ncbi.nlm.nih.gov/pubmed/17488823?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVMedline PubMed]<br>
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#Ito, S., et al., ''Activation-induced cytidine deaminase shuttles between nucleus and cytoplasm like apolipoprotein B mRNA editing catalytic polypeptide 1.'' Proc Natl Acad Sci U S A, 2004. '''101'''(7): p. 1975-80[http://www.ncbi.nlm.nih.gov/pubmed/14769937?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum PubMed]<br>
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#Seki, M., P.J. ''Gearhart, and R.D. Wood, DNA polymerases and somatic hypermutation of immunoglobulin genes.'' EMBO Rep, 2005. '''6'''(12): p. 1143-8.[http://www.ncbi.nlm.nih.gov/pubmed/16319960?ordinalpos=&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.SmartSearch&log$=citationsensor PubMed]<br>
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#Neuberger, M.S., et al., ''Somatic hypermutation at A.T pairs: polymerase error versus dUTP incorporation.'' Nat Rev Immunol, 2005. '''5'''(2): p. 171-8.[http://www.ncbi.nlm.nih.gov/pubmed/15688043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVMedline PubMed]
== GAL4 related ==
== GAL4 related ==
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#Marmorstein, R., et al., ''DNA recognition by GAL4: structure of a protein-DNA complex.'' Nature, 1992. '''356'''(6368): p. 408-14. [http://www.ncbi.nlm.nih.gov/pubmed/1557122?ordinalpos=&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.SmartSearch&log$=citationsensor PubMed]
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#Marmorstein, R., et al., ''DNA recognition by GAL4: structure of a protein-DNA complex.'' Nature, 1992. '''356'''(6368): p. 408-14. [http://www.ncbi.nlm.nih.gov/pubmed/1557122?ordinalpos=&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.SmartSearch&log$=citationsensor PubMed]<br>
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#Ma, J. and M. Ptashne, ''Deletion analysis of GAL4 defines two transcriptional activating segments.'' Cell, 1987. '''48'''(5): p. 847-53. [http://www.ncbi.nlm.nih.gov/pubmed/3028647?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum PubMed]<br>
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#Chasman, D.I. and R.D. Kornberg, ''GAL4 protein: purification, association with GAL80 protein, and conserved domain structure.'' Mol Cell Biol, 1990. '''10'''(6): p. 2916-23. [http://www.ncbi.nlm.nih.gov/pubmed/2188103?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVMedline PubMed]<br>
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#Gill, G. and M. Ptashne, ''Mutants of GAL4 protein altered in an activation function.'' Cell, 1987. '''51'''(1): p. 121-6 [http://www.ncbi.nlm.nih.gov/pubmed/3115592?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVMedline PubMed]<br>
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#Hidalgo, P., et al., ''Recruitment of the transcriptional machinery through GAL11P: structure and interactions of the GAL4 dimerization domain.'' Genes Dev, 2001. '''15'''(8): p. 1007-20.[http://www.ncbi.nlm.nih.gov/pubmed/11316794?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVMedline PubMed]
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==Yeast Manipulate ==
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#Forsburg, S.L., ''S. pombe strain maintenance and media.'' Curr Protoc Mol Biol, 2003. '''Chapter 13''': p. Unit 13 15.[http://www.ncbi.nlm.nih.gov/pubmed/18265319?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVMedline PubMed]<br>
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#Bahler, J., et al., ''Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe.'' Yeast, 1998. '''14'''(10): p. 943-51. [http://www.ncbi.nlm.nih.gov/pubmed/9717240?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVMedline PubMed]<br>
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#[http://openwetware.org/wiki/Blackburn:Yeast_Colony_PCR Blackburn:Yeast Colony PCR]

Current revision

Contents

Reference

AID related

  1. Chaudhuri, J., C. Khuong, and F.W. Alt, Replication protein A interacts with AID to promote deamination of somatic hypermutation targets. Nature, 2004. 430(7003): p. 992-8. PubMed
  2. Prochnow, C., et al., The APOBEC-2 crystal structure and functional implications for the deaminase AID. Nature, 2007. 445(7126): p. 447-51. PubMed
  3. Mayorov, V.I., et al., Expression of human AID in yeast induces mutations in context similar to the context of somatic hypermutation at G-C pairs in immunoglobulin genes. BMC Immunol, 2005. 6(1): p. 10. PubMed
  4. Kotani, A., et al., A target selection of somatic hypermutations is regulated similarly between T and B cells upon activation-induced cytidine deaminase expression. Proc Natl Acad Sci U S A, 2005. 102(12): p. 4506-11.PubMed
  5. Gomez-Gonzalez, B. and A. Aguilera, Activation-induced cytidine deaminase action is strongly stimulated by mutations of the THO complex. Proc Natl Acad Sci U S A, 2007. 104(20): p. 8409-14.PubMed
  6. Ito, S., et al., Activation-induced cytidine deaminase shuttles between nucleus and cytoplasm like apolipoprotein B mRNA editing catalytic polypeptide 1. Proc Natl Acad Sci U S A, 2004. 101(7): p. 1975-80PubMed
  7. Seki, M., P.J. Gearhart, and R.D. Wood, DNA polymerases and somatic hypermutation of immunoglobulin genes. EMBO Rep, 2005. 6(12): p. 1143-8.PubMed
  8. Neuberger, M.S., et al., Somatic hypermutation at A.T pairs: polymerase error versus dUTP incorporation. Nat Rev Immunol, 2005. 5(2): p. 171-8.PubMed

GAL4 related

  1. Marmorstein, R., et al., DNA recognition by GAL4: structure of a protein-DNA complex. Nature, 1992. 356(6368): p. 408-14. PubMed
  2. Ma, J. and M. Ptashne, Deletion analysis of GAL4 defines two transcriptional activating segments. Cell, 1987. 48(5): p. 847-53. PubMed
  3. Chasman, D.I. and R.D. Kornberg, GAL4 protein: purification, association with GAL80 protein, and conserved domain structure. Mol Cell Biol, 1990. 10(6): p. 2916-23. PubMed
  4. Gill, G. and M. Ptashne, Mutants of GAL4 protein altered in an activation function. Cell, 1987. 51(1): p. 121-6 PubMed
  5. Hidalgo, P., et al., Recruitment of the transcriptional machinery through GAL11P: structure and interactions of the GAL4 dimerization domain. Genes Dev, 2001. 15(8): p. 1007-20.PubMed

Yeast Manipulate

  1. Forsburg, S.L., S. pombe strain maintenance and media. Curr Protoc Mol Biol, 2003. Chapter 13: p. Unit 13 15.PubMed
  2. Bahler, J., et al., Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe. Yeast, 1998. 14(10): p. 943-51. PubMed
  3. Blackburn:Yeast Colony PCR
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