IGEM:The Citadel/Resources

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==Research Papers==
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'''Research Papers'''
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''If there isn't a link to something you need, that's because access is restricted.  If you're on campus, you can probably get it by going through the right channel.  Otherwise, shoot me an email or get with me in person for a copy.''
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''Can't get to something below?  The world is not yet your oyster - restricted access is still alive and well in certain circles.  If you can't find a paper listed below, shoot me '''[[User:Brian D. Burnley|Brian D. Burnley]] 05:52, 9 April 2010 (EDT)''': an email.''
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Biobrick-related
 
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* [http://web.mit.edu/synbio/release/docs/biobricks.pdf Idempotent Vector Design for Standard Assembly of Biobricks] by Tom Knight
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<u>Foundations</u>
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* [http://www.jbioleng.org/content/3/1/4 Measuring the activity of BioBrick promoters using an in vivo reference standard] by Jason Kelly ''et al.''
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Bacterial Social Communication
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* Elowitz, Michael. [http://www.nature.com/nature/journal/v403/n6767/abs/403335a0.html A synthetic oscillatory network of transcriptional regulators.]
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* Gardner, Timothy. [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Construction of a genetic toggle switch in Escherichia coli.]
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* Tabor, Jeffrey.  [http://www.cell.com/retrieve/pii/S0092867409005091 A synthetic genetic edge detection program.]
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* Knight, Tom. [http://web.mit.edu/synbio/release/docs/biobricks.pdf Idempotent Vector Design for Standard Assembly of Biobricks.]
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* Kelly, Jason. [http://www.jbioleng.org/content/3/1/4 Measuring the activity of BioBrick promoters using an in vivo reference standard.]
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* A synchronized quorum of genetic clocks by Tal Danino ''et al.''
 
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==Protocols==
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<u>Bacterial Social Communication</u>
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[http://ginkgobioworks.com/support/ 3A Biobrick Assembly]
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* Danino, Tal. [http://www.nature.com/nature/journal/v463/n7279/full/nature08753.html A synchronized quorum of genetic clocks.]
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==Important Links==
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<u>Energy</u>
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* Feng, Xueyang. [http://aem.asm.org/cgi/content/full/75/15/5001 Characterization of the Central Metabolic Pathways in Thermoanaerobacter  sp. Strain X514 via Isotopomer-Assisted Metabolite Analysis]
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<u>Technology</u>
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* Wang, Harris. [http://www.nature.com/nature/journal/v460/n7257/full/nature08187.html Programming cells by multiplex genome engineering and accelerated evolution.]
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<u>''In Silico''</u>
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* Villalobos, Alan. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1523223/ Gene Designer: a synthetic biology tool for constructing artificial DNA segments]
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'''Protocols'''
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* [http://ginkgobioworks.com/support/ 3A Biobrick Assembly]
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* [http://ginkgobioworks.com/files/FooCampersGuide.pdf The Foo Camper's Guide to Biological Engineering]
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* [[IGEM:The_Citadel/Electrocompetent_Cells| The Citadel's Preparing Electrocompetent Cells]]
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* [[IGEM:The_Citadel/PCR_Protocol| The Citadel's PCR Protocol]]
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'''Important Links'''
* [http://2010.igem.org/Main_Page| 2010 iGEM Competition]
* [http://2010.igem.org/Main_Page| 2010 iGEM Competition]
* [http://partsregistry.org/Main_Page| Parts Registry]
* [http://partsregistry.org/Main_Page| Parts Registry]
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==Tools==
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'''Tools'''
* [http://www.ncbi.nlm.nih.gov/ National Center for Biotechnology Information]
* [http://www.ncbi.nlm.nih.gov/ National Center for Biotechnology Information]
* [http://www.biology.utah.edu/jorgensen/wayned/ape/ Plasmid Editor]
* [http://www.biology.utah.edu/jorgensen/wayned/ape/ Plasmid Editor]
* [http://ws.g-language.org/g4/ Pathway Projector]
* [http://ws.g-language.org/g4/ Pathway Projector]
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* [http://www.cbs.dtu.dk/services/NetNGlyc/ N-Glycosylation Predictor]
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==Tutorials & Lessons==
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'''Tutorials & Lessons'''
* [[Arking:JCAOligoTutorialHome| Excellent Tutorial Series on the Foundations of SynBio]]
* [[Arking:JCAOligoTutorialHome| Excellent Tutorial Series on the Foundations of SynBio]]
* [http://2009.igem.org/Instructional_Videos| iGEM Instructional Videos]
* [http://2009.igem.org/Instructional_Videos| iGEM Instructional Videos]
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* [http://partsregistry.org/Help:Contents| Everything you Want to Know About BioBricks]
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* [http://partsregistry.org/Help:Contents| Everything You Want to Know About BioBricks]
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* [[Searching_the_literature| A Guide to Searching the Literature]]
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==Blogs==
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'''Blogs'''
* [http://scienceblogs.com/oscillator/ Oscillator] by [[User:ChristinaAgapakis| Christina Agapakis]]
* [http://scienceblogs.com/oscillator/ Oscillator] by [[User:ChristinaAgapakis| Christina Agapakis]]

Current revision

Home Team Project Notebook Events Resources Multimedia Contact Us

Research Papers

Can't get to something below? The world is not yet your oyster - restricted access is still alive and well in certain circles. If you can't find a paper listed below, shoot me Brian D. Burnley 05:52, 9 April 2010 (EDT): an email.


Foundations


Bacterial Social Communication


Energy


Technology


In Silico


Protocols

Important Links


Tools


Tutorials & Lessons


Blogs

Personal tools