IGEM:The Citadel/Resources - Revision history

Patrick C. Sullivan at 01:25, 27 July 2010

2010-07-27T01:25:12Z

←Older revision		Revision as of 01:25, 27 July 2010
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	* [http://ginkgobioworks.com/files/FooCampersGuide.pdf The Foo Camper's Guide to Biological Engineering]		* [http://ginkgobioworks.com/files/FooCampersGuide.pdf The Foo Camper's Guide to Biological Engineering]
	* [[IGEM:The_Citadel/Electrocompetent_Cells\| The Citadel's Preparing Electrocompetent Cells]]		* [[IGEM:The_Citadel/Electrocompetent_Cells\| The Citadel's Preparing Electrocompetent Cells]]
		+	* [[IGEM:The_Citadel/PCR_Protocol\| The Citadel's PCR Protocol]]

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Brian D. Burnley at 20:45, 9 July 2010

2010-07-09T20:45:26Z

←Older revision		Revision as of 20:45, 9 July 2010
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	* [http://www.biology.utah.edu/jorgensen/wayned/ape/ Plasmid Editor]		* [http://www.biology.utah.edu/jorgensen/wayned/ape/ Plasmid Editor]
	* [http://ws.g-language.org/g4/ Pathway Projector]		* [http://ws.g-language.org/g4/ Pathway Projector]
		+	* [http://www.cbs.dtu.dk/services/NetNGlyc/ N-Glycosylation Predictor]

Brian D. Burnley at 20:35, 5 June 2010

2010-06-05T20:35:05Z

←Older revision		Revision as of 20:35, 5 June 2010
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	* [http://ginkgobioworks.com/support/ 3A Biobrick Assembly]		* [http://ginkgobioworks.com/support/ 3A Biobrick Assembly]
	* [http://ginkgobioworks.com/files/FooCampersGuide.pdf The Foo Camper's Guide to Biological Engineering]		* [http://ginkgobioworks.com/files/FooCampersGuide.pdf The Foo Camper's Guide to Biological Engineering]
		+	* [[IGEM:The_Citadel/Electrocompetent_Cells\| The Citadel's Preparing Electrocompetent Cells]]

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Brian D. Burnley at 23:45, 28 May 2010

2010-05-28T23:45:11Z

←Older revision		Revision as of 23:45, 28 May 2010
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	* Villalobos, Alan. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1523223/ Gene Designer: a synthetic biology tool for constructing artificial DNA segments]		* Villalobos, Alan. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1523223/ Gene Designer: a synthetic biology tool for constructing artificial DNA segments]
		+

	'''Protocols'''		'''Protocols'''
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	* [http://2010.igem.org/Main_Page\| 2010 iGEM Competition]		* [http://2010.igem.org/Main_Page\| 2010 iGEM Competition]
	* [http://partsregistry.org/Main_Page\| Parts Registry]		* [http://partsregistry.org/Main_Page\| Parts Registry]
		+

	'''Tools'''		'''Tools'''
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	* [http://www.biology.utah.edu/jorgensen/wayned/ape/ Plasmid Editor]		* [http://www.biology.utah.edu/jorgensen/wayned/ape/ Plasmid Editor]
	* [http://ws.g-language.org/g4/ Pathway Projector]		* [http://ws.g-language.org/g4/ Pathway Projector]
		+

	'''Tutorials & Lessons'''		'''Tutorials & Lessons'''
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	* [http://partsregistry.org/Help:Contents\| Everything You Want to Know About BioBricks]		* [http://partsregistry.org/Help:Contents\| Everything You Want to Know About BioBricks]
	* [[Searching_the_literature\| A Guide to Searching the Literature]]		* [[Searching_the_literature\| A Guide to Searching the Literature]]
		+

	'''Blogs'''		'''Blogs'''

Brian D. Burnley at 23:44, 28 May 2010

2010-05-28T23:44:37Z

←Older revision		Revision as of 23:44, 28 May 2010
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	\| valign="top" "style="background-color:#e5edc8; width="66%"\|		\| valign="top" "style="background-color:#e5edc8; width="66%"\|

-	==Research Papers==	+	'''Research Papers'''

	''Can't get to something below? The world is not yet your oyster - restricted access is still alive and well in certain circles. If you can't find a paper listed below, shoot me '''[[User:Brian D. Burnley\|Brian D. Burnley]] 05:52, 9 April 2010 (EDT)''': an email.''		''Can't get to something below? The world is not yet your oyster - restricted access is still alive and well in certain circles. If you can't find a paper listed below, shoot me '''[[User:Brian D. Burnley\|Brian D. Burnley]] 05:52, 9 April 2010 (EDT)''': an email.''


-	~~'''~~Foundations~~'''~~	+	<u>Foundations</u>

	* Elowitz, Michael. [http://www.nature.com/nature/journal/v403/n6767/abs/403335a0.html A synthetic oscillatory network of transcriptional regulators.]		* Elowitz, Michael. [http://www.nature.com/nature/journal/v403/n6767/abs/403335a0.html A synthetic oscillatory network of transcriptional regulators.]
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-	~~'''~~Bacterial Social Communication~~'''~~	+	<u>Bacterial Social Communication</u>

	* Danino, Tal. [http://www.nature.com/nature/journal/v463/n7279/full/nature08753.html A synchronized quorum of genetic clocks.]		* Danino, Tal. [http://www.nature.com/nature/journal/v463/n7279/full/nature08753.html A synchronized quorum of genetic clocks.]


-	~~'''~~Energy~~'''~~	+	<u>Energy</u>

	* Feng, Xueyang. [http://aem.asm.org/cgi/content/full/75/15/5001 Characterization of the Central Metabolic Pathways in Thermoanaerobacter sp. Strain X514 via Isotopomer-Assisted Metabolite Analysis]		* Feng, Xueyang. [http://aem.asm.org/cgi/content/full/75/15/5001 Characterization of the Central Metabolic Pathways in Thermoanaerobacter sp. Strain X514 via Isotopomer-Assisted Metabolite Analysis]


-	~~'''~~Technology~~'''~~	+	<u>Technology</u>

	* Wang, Harris. [http://www.nature.com/nature/journal/v460/n7257/full/nature08187.html Programming cells by multiplex genome engineering and accelerated evolution.]		* Wang, Harris. [http://www.nature.com/nature/journal/v460/n7257/full/nature08187.html Programming cells by multiplex genome engineering and accelerated evolution.]


-	~~'''~~''In Silico''~~'''~~	+	<u>''In Silico''</u>

	* Villalobos, Alan. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1523223/ Gene Designer: a synthetic biology tool for constructing artificial DNA segments]		* Villalobos, Alan. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1523223/ Gene Designer: a synthetic biology tool for constructing artificial DNA segments]

-	==Protocols==	+	'''Protocols'''

	* [http://ginkgobioworks.com/support/ 3A Biobrick Assembly]		* [http://ginkgobioworks.com/support/ 3A Biobrick Assembly]
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-	==Important Links==	+	'''Important Links'''
-		+
	* [http://2010.igem.org/Main_Page\| 2010 iGEM Competition]		* [http://2010.igem.org/Main_Page\| 2010 iGEM Competition]
	* [http://partsregistry.org/Main_Page\| Parts Registry]		* [http://partsregistry.org/Main_Page\| Parts Registry]

-	==Tools==	+	'''Tools'''

	* [http://www.ncbi.nlm.nih.gov/ National Center for Biotechnology Information]		* [http://www.ncbi.nlm.nih.gov/ National Center for Biotechnology Information]
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	* [http://ws.g-language.org/g4/ Pathway Projector]		* [http://ws.g-language.org/g4/ Pathway Projector]

-	==Tutorials & Lessons==	+	'''Tutorials & Lessons'''

	* [[Arking:JCAOligoTutorialHome\| Excellent Tutorial Series on the Foundations of SynBio]]		* [[Arking:JCAOligoTutorialHome\| Excellent Tutorial Series on the Foundations of SynBio]]
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	* [[Searching_the_literature\| A Guide to Searching the Literature]]		* [[Searching_the_literature\| A Guide to Searching the Literature]]

-	==Blogs==	+	'''Blogs'''

	* [http://scienceblogs.com/oscillator/ Oscillator] by [[User:ChristinaAgapakis\| Christina Agapakis]]		* [http://scienceblogs.com/oscillator/ Oscillator] by [[User:ChristinaAgapakis\| Christina Agapakis]]

Brian D. Burnley: /* Research Papers */

2010-05-27T18:33:00Z

Research Papers

←Older revision		Revision as of 18:33, 27 May 2010
Line 18:		Line 18:
	==Research Papers==		==Research Papers==

-	''Can't get to something below? The world is not yet your oyster - restricted access is still alive and well in certain circles. If you can't find a paper listed below, shoot me *'''[[User:Brian D. Burnley\|Brian D. Burnley]] 05:52, 9 April 2010 (EDT)''': an email.''	+	''Can't get to something below? The world is not yet your oyster - restricted access is still alive and well in certain circles. If you can't find a paper listed below, shoot me '''[[User:Brian D. Burnley\|Brian D. Burnley]] 05:52, 9 April 2010 (EDT)''': an email.''


Line 48:		Line 48:

	* Villalobos, Alan. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1523223/ Gene Designer: a synthetic biology tool for constructing artificial DNA segments]		* Villalobos, Alan. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1523223/ Gene Designer: a synthetic biology tool for constructing artificial DNA segments]
-

	==Protocols==		==Protocols==

Brian D. Burnley: /* Tutorials & Lessons */

2010-05-25T16:40:22Z

Tutorials & Lessons

←Older revision		Revision as of 16:40, 25 May 2010
Line 73:		Line 73:
	* [http://2009.igem.org/Instructional_Videos\| iGEM Instructional Videos]		* [http://2009.igem.org/Instructional_Videos\| iGEM Instructional Videos]
	* [http://partsregistry.org/Help:Contents\| Everything You Want to Know About BioBricks]		* [http://partsregistry.org/Help:Contents\| Everything You Want to Know About BioBricks]
		+	* [[Searching_the_literature\| A Guide to Searching the Literature]]

	==Blogs==		==Blogs==

Brian D. Burnley: /* Protocols */

2010-04-19T20:07:40Z

Protocols

←Older revision		Revision as of 20:07, 19 April 2010
Line 53:		Line 53:

	* [http://ginkgobioworks.com/support/ 3A Biobrick Assembly]		* [http://ginkgobioworks.com/support/ 3A Biobrick Assembly]
		+	* [http://ginkgobioworks.com/files/FooCampersGuide.pdf The Foo Camper's Guide to Biological Engineering]

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Brian D. Burnley at 22:31, 9 April 2010

2010-04-09T22:31:43Z

←Older revision		Revision as of 22:31, 9 April 2010
Line 20:		Line 20:
	''Can't get to something below? The world is not yet your oyster - restricted access is still alive and well in certain circles. If you can't find a paper listed below, shoot me *'''[[User:Brian D. Burnley\|Brian D. Burnley]] 05:52, 9 April 2010 (EDT)''': an email.''		''Can't get to something below? The world is not yet your oyster - restricted access is still alive and well in certain circles. If you can't find a paper listed below, shoot me *'''[[User:Brian D. Burnley\|Brian D. Burnley]] 05:52, 9 April 2010 (EDT)''': an email.''

		+
		+	'''Foundations'''

	* Elowitz, Michael. [http://www.nature.com/nature/journal/v403/n6767/abs/403335a0.html A synthetic oscillatory network of transcriptional regulators.]		* Elowitz, Michael. [http://www.nature.com/nature/journal/v403/n6767/abs/403335a0.html A synthetic oscillatory network of transcriptional regulators.]
	* Gardner, Timothy. [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Construction of a genetic toggle switch in Escherichia coli.]		* Gardner, Timothy. [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Construction of a genetic toggle switch in Escherichia coli.]
	* Tabor, Jeffrey. [http://www.cell.com/retrieve/pii/S0092867409005091 A synthetic genetic edge detection program.]		* Tabor, Jeffrey. [http://www.cell.com/retrieve/pii/S0092867409005091 A synthetic genetic edge detection program.]
-
-
-	~~'''Biobricks'''~~
-
	* Knight, Tom. [http://web.mit.edu/synbio/release/docs/biobricks.pdf Idempotent Vector Design for Standard Assembly of Biobricks.]		* Knight, Tom. [http://web.mit.edu/synbio/release/docs/biobricks.pdf Idempotent Vector Design for Standard Assembly of Biobricks.]
	* Kelly, Jason. [http://www.jbioleng.org/content/3/1/4 Measuring the activity of BioBrick promoters using an in vivo reference standard.]		* Kelly, Jason. [http://www.jbioleng.org/content/3/1/4 Measuring the activity of BioBrick promoters using an in vivo reference standard.]
Line 35:		Line 33:

	* Danino, Tal. [http://www.nature.com/nature/journal/v463/n7279/full/nature08753.html A synchronized quorum of genetic clocks.]		* Danino, Tal. [http://www.nature.com/nature/journal/v463/n7279/full/nature08753.html A synchronized quorum of genetic clocks.]
		+
		+
		+	'''Energy'''
		+
		+	* Feng, Xueyang. [http://aem.asm.org/cgi/content/full/75/15/5001 Characterization of the Central Metabolic Pathways in Thermoanaerobacter sp. Strain X514 via Isotopomer-Assisted Metabolite Analysis]
		+
		+
		+	'''Technology'''

	* Wang, Harris. [http://www.nature.com/nature/journal/v460/n7257/full/nature08187.html Programming cells by multiplex genome engineering and accelerated evolution.]		* Wang, Harris. [http://www.nature.com/nature/journal/v460/n7257/full/nature08187.html Programming cells by multiplex genome engineering and accelerated evolution.]
		+
		+
		+	'''''In Silico'''''
		+
		+	* Villalobos, Alan. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1523223/ Gene Designer: a synthetic biology tool for constructing artificial DNA segments]


	==Protocols==		==Protocols==

-	[http://ginkgobioworks.com/support/ 3A Biobrick Assembly]	+	* [http://ginkgobioworks.com/support/ 3A Biobrick Assembly]

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Brian D. Burnley at 10:14, 9 April 2010

2010-04-09T10:14:38Z

←Older revision		Revision as of 10:14, 9 April 2010
Line 20:		Line 20:
	''Can't get to something below? The world is not yet your oyster - restricted access is still alive and well in certain circles. If you can't find a paper listed below, shoot me *'''[[User:Brian D. Burnley\|Brian D. Burnley]] 05:52, 9 April 2010 (EDT)''': an email.''		''Can't get to something below? The world is not yet your oyster - restricted access is still alive and well in certain circles. If you can't find a paper listed below, shoot me *'''[[User:Brian D. Burnley\|Brian D. Burnley]] 05:52, 9 April 2010 (EDT)''': an email.''

-	A synthetic oscillatory network of transcriptional regulators.	+
		+	* Elowitz, Michael. [http://www.nature.com/nature/journal/v403/n6767/abs/403335a0.html A synthetic oscillatory network of transcriptional regulators.]
		+	* Gardner, Timothy. [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Construction of a genetic toggle switch in Escherichia coli.]
		+	* Tabor, Jeffrey. [http://www.cell.com/retrieve/pii/S0092867409005091 A synthetic genetic edge detection program.]
		+

	'''Biobricks'''		'''Biobricks'''

-	* Knight, Tom. [http://web.mit.edu/synbio/release/docs/biobricks.pdf Idempotent Vector Design for Standard Assembly of Biobricks]	+	* Knight, Tom. [http://web.mit.edu/synbio/release/docs/biobricks.pdf Idempotent Vector Design for Standard Assembly of Biobricks.]
-	* Kelly, Jason. [http://www.jbioleng.org/content/3/1/4 Measuring the activity of BioBrick promoters using an in vivo reference standard]	+	* Kelly, Jason. [http://www.jbioleng.org/content/3/1/4 Measuring the activity of BioBrick promoters using an in vivo reference standard.]
		+

	'''Bacterial Social Communication'''		'''Bacterial Social Communication'''

-	* ~~Tal~~ Danino. A synchronized quorum of genetic clocks	+	* Danino, Tal. [http://www.nature.com/nature/journal/v463/n7279/full/nature08753.html A synchronized quorum of genetic clocks.]
		+
		+	* Wang, Harris. [http://www.nature.com/nature/journal/v460/n7257/full/nature08187.html Programming cells by multiplex genome engineering and accelerated evolution.]


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	* [[Arking:JCAOligoTutorialHome\| Excellent Tutorial Series on the Foundations of SynBio]]		* [[Arking:JCAOligoTutorialHome\| Excellent Tutorial Series on the Foundations of SynBio]]
	* [http://2009.igem.org/Instructional_Videos\| iGEM Instructional Videos]		* [http://2009.igem.org/Instructional_Videos\| iGEM Instructional Videos]
-	* [http://partsregistry.org/Help:Contents\| Everything ~~you~~ Want to Know About BioBricks]	+	* [http://partsregistry.org/Help:Contents\| Everything You Want to Know About BioBricks]

	==Blogs==		==Blogs==