IGEM:UNAM/2009/Notebook/Modeling logbook Claudia/2010/09/08: Difference between revisions

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|style="background-color: #EEE"|[[Image:igem-logo-150px.png|150px]]<span style="font-size:22px;"> iGEM Project name 1</span>
|style="background-color: #EEE"|[[Image:TeamLogo.jpg|350px]]<span style="font-size:19px;"> UNAM-Genomics-Mexico team</span>
|style="background-color: #F2F2F2" align="center"|<html><img src="/images/9/94/Report.png" border="0" /></html> [[{{#sub:{{FULLPAGENAME}}|0|-11}}|Main project page]]<br />{{#if:{{#lnpreventry:{{FULLPAGENAME}}}}|<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>[[{{#lnpreventry:{{FULLPAGENAME}}}}{{!}}Previous entry]]<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html>}}{{#if:{{#lnnextentry:{{FULLPAGENAME}}}}|[[{{#lnnextentry:{{FULLPAGENAME}}}}{{!}}Next entry]]<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>}}
|style="background-color: #F2F2F2" align="center"|<html><img src="/images/9/94/Report.png" border="0" /></html> [[{{#sub:{{FULLPAGENAME}}|0|-11}}|Main project page]]<br />{{#if:{{#lnpreventry:{{FULLPAGENAME}}}}|<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>[[{{#lnpreventry:{{FULLPAGENAME}}}}{{!}}Previous entry]]<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html>}}{{#if:{{#lnnextentry:{{FULLPAGENAME}}}}|[[{{#lnnextentry:{{FULLPAGENAME}}}}{{!}}Next entry]]<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>}}
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Revision as of 14:23, 9 October 2010

UNAM-Genomics-Mexico team <html><img src="/images/9/94/Report.png" border="0" /></html> Main project page
<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>

Ligation Procedure:LovTAP-Promoters and BBa_K098991 to plasmid pSB3K3

I'm working in Step 7 of the Ligation Procedure: LovTAP_Promoters and BBa_K098991 to plasmid pSB3K3.

  • 7.Colony PCR to confirm ligations:

Analyze the colonies with Colony PCR to confirm that they contain the correct ligation.

The primers that I am using are:

Forward (5'->3'): Preffix primer.

Reverse:(5'->3'): Suffix primer.

These primers would amplify LovTAP ligated to each promoter and BBa_K098991, if the ligation was correctly done.

Results:Ligations LovTAP-Promoters with plasmid pSB3K3.Procedure Step 7

After re-culturing the colonies transformed with each ligation mixture, only colonies harboring the LovTAP+J23105 (6 and 7) and LovTAP+J23114 (3) fused to plasmid pSB3K3 grew correctly.

Thus, these colonies were selected to do the colony PCR reactions.

Colony PCRs Ligations LovTAP+promoters to plasmid pSB3K3..Lane1:Ladder. Lane2:Plasmid LovTAP-J23114 + pSB3K3 (colony 3). Lane3 and 4:Plasmid LovTAP-J23105 + pSB3K3 (colonies 6 and 7, respectively).

Results:Ligation. Part BBa_K098991 with plasmid pSB3K3.Procedure Step 7

After re-culturing the colonies transformed with the ligation mixture, only one colony (1) harboring the Part BBa_K098991(cI regulated promoter+RBS+GFP 933bp) fused to plasmid pSB3K3 grew correctly.

Thus, this colony was selected to do the colony PCR reaction.

Colony PCRs Ligations LovTAP+promoters to plasmid pSB3K3..Lane1:Ladder. Lane15:Colony PCR Part BBa_K098991 amplified product fused to plasmid pSB3K3 from colony 1. The other lanes are samples from other experiments