ISEEM:Publications, Talks & Media: Difference between revisions
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Revision as of 10:49, 11 December 2009
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Software
- AMPHORA
- Download here http://bobcat.genomecenter.ucdavis.edu/AMPHORA
- Described in "Wu M and Eisen JA. A simple, fast, and accurate method of phylogenomic inference. Genome Biol 2008 Oct 13; 9(10) R151. doi:10.1186/gb-2008-9-10-r151 " and available here http://genomebiology.com/2008/9/10/R151#B41
- STAP
- Download here http://bobcat.genomecenter.ucdavis.edu/mediawiki/index.php/STAP_download
- Described in Wu D, Hartman A, Ward N, and Eisen JA. An automated phylogenetic tree-based small subunit rRNA taxonomy and alignment pipeline (STAP). PLoS ONE 2008 Jul 2; 3(7) e2566. doi:10.1371/journal.pone.0002566 and available here http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0002566
Publications
- Matsuo K. Wigner distribution functions on a linear amplifier. Phys Rev A. 1993 Apr;47(4):3337-3345. DOI:10.1103/physreva.47.3337 |
- Wu M and Eisen JA. A simple, fast, and accurate method of phylogenomic inference. Genome Biol. 2008 Oct 13;9(10):R151. DOI:10.1186/gb-2008-9-10-r151 |
- Wu D, Hartman A, Ward N, and Eisen JA. An automated phylogenetic tree-based small subunit rRNA taxonomy and alignment pipeline (STAP). PLoS One. 2008 Jul 2;3(7):e2566. DOI:10.1371/journal.pone.0002566 |
News
Check out the blog of Jonathan Eisen
