http://www.openwetware.org/index.php?title=ISEEM:Publications%2C_Talks_%26_Media&feed=atom&action=history 2013-06-19T12:53:28Z Revision history for this page on the wiki MediaWiki 1.13.2 http://www.openwetware.org/index.php?title=ISEEM:Publications%2C_Talks_%26_Media&diff=395281&oldid=prev 2010-03-01T19:08:16Z

<p><span class="autocomment">Software</span></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 19:08, 1 March 2010</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 8:</td> <td colspan="2" class="diff-lineno">Line 8:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>= Products from this project&nbsp; =</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>= Products from this project&nbsp; =</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Software ==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Software ==</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>#AMPHORA</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>#<ins class="diffchange diffchange-inline">[[</ins>AMPHORA<ins class="diffchange diffchange-inline">]]</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#* Download here http://bobcat.genomecenter.ucdavis.edu/AMPHORA</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#* Download here http://bobcat.genomecenter.ucdavis.edu/AMPHORA</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#* Described in &quot;Wu M and Eisen JA. A simple, fast, and accurate method of phylogenomic inference. Genome Biol 2008 Oct 13; 9(10) R151. doi:10.1186/gb-2008-9-10-r151 &quot; and available here http://genomebiology.com/2008/9/10/R151#B41</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#* Described in &quot;Wu M and Eisen JA. A simple, fast, and accurate method of phylogenomic inference. Genome Biol 2008 Oct 13; 9(10) R151. doi:10.1186/gb-2008-9-10-r151 &quot; and available here http://genomebiology.com/2008/9/10/R151#B41</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>#STAP</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>#<ins class="diffchange diffchange-inline">[[</ins>STAP<ins class="diffchange diffchange-inline">]]</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#* Download here http://bobcat.genomecenter.ucdavis.edu/mediawiki/index.php/STAP_download</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#* Download here http://bobcat.genomecenter.ucdavis.edu/mediawiki/index.php/STAP_download</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#* Described in Wu D, Hartman A, Ward N, and Eisen JA. An automated phylogenetic tree-based small subunit rRNA taxonomy and alignment pipeline (STAP). PLoS ONE 2008 Jul 2; 3(7) e2566. doi:10.1371/journal.pone.0002566&nbsp; and available here http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0002566</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#* Described in Wu D, Hartman A, Ward N, and Eisen JA. An automated phylogenetic tree-based small subunit rRNA taxonomy and alignment pipeline (STAP). PLoS ONE 2008 Jul 2; 3(7) e2566. doi:10.1371/journal.pone.0002566&nbsp; and available here http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0002566</div></td></tr> <!-- diff generator: internal 2013-06-19 12:53:28 --> </table>

Guillaume Jospin http://www.openwetware.org/index.php?title=ISEEM:Publications%2C_Talks_%26_Media&diff=391864&oldid=prev 2010-02-16T19:51:04Z

<p><span class="autocomment">Publications</span></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 19:51, 16 February 2010</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 18:</td> <td colspan="2" class="diff-lineno">Line 18:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>&lt;biblio&gt;</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>&lt;biblio&gt;</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">#Wu-2009 pmid=20033048</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#ODwyer-2009 pmid=19336583</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#ODwyer-2009 pmid=19336583</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#ODwyer-2009 pmid=19909313</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#ODwyer-2009 pmid=19909313</div></td></tr> <!-- diff generator: internal 2013-06-19 12:53:28 --> </table>

Jeisen http://www.openwetware.org/index.php?title=ISEEM:Publications%2C_Talks_%26_Media&diff=391862&oldid=prev 2010-02-16T19:50:08Z

<p><span class="autocomment">Recent news</span></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 19:50, 16 February 2010</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 4:</td> <td colspan="2" class="diff-lineno">Line 4:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>= Recent news =</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>= Recent news =</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>&#160;</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">* &quot;Genomic Encyclopedia of Bacteria and Archaea (GEBA)&quot; publication. The GEBA project, coordinated by Jonathan Eisen and carried out at the Joint Genome Institute, strives to improve the phylogenetic sampling of bacterial and archaeal genomes. A paper describing this effort was published in [http://www.nature.com/nature/journal/v462/n7276/full/nature08656.html Nature] recently. Some of the analysis reported in the paper was done as part of the iSEEM project. More information can be found in the [http://www.nytimes.com/2009/12/29/science/29microbes.html New York Times article that discussed the study] and in Jonathan Eisen's blog posts [http://phylogenomics.blogspot.com/2009/12/more-coverage-of-geba-phylogeny-driven.html here] and [http://phylogenomics.blogspot.com/2009/12/story-behind-nature-paper-on-phylogeny.html here].</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>= Products from this project&nbsp; =</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>= Products from this project&nbsp; =</div></td></tr> <!-- diff generator: internal 2013-06-19 12:53:28 --> </table>

Jeisen http://www.openwetware.org/index.php?title=ISEEM:Publications%2C_Talks_%26_Media&diff=391858&oldid=prev 2010-02-16T19:44:27Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 19:44, 16 February 2010</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 2:</td> <td colspan="2" class="diff-lineno">Line 2:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>&lt;div style=&quot;width: 750px;padding-right: 25px; padding-left: 25px;font-family: Arial, Helvetica, sans-serif;font-size: 12px;margin-bottom: 30px;line-height: 18px;padding-top: 0px;&quot;&gt;</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>&lt;div style=&quot;width: 750px;padding-right: 25px; padding-left: 25px;font-family: Arial, Helvetica, sans-serif;font-size: 12px;margin-bottom: 30px;line-height: 18px;padding-top: 0px;&quot;&gt;</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">= Recent news =</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">= Products from this project&nbsp; =</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Software ==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Software ==</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#AMPHORA</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#AMPHORA</div></td></tr> <!-- diff generator: internal 2013-06-19 12:53:28 --> </table>

Jeisen http://www.openwetware.org/index.php?title=ISEEM:Publications%2C_Talks_%26_Media&diff=374235&oldid=prev 2009-12-11T17:53:36Z

<p><span class="autocomment">Publications</span></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 17:53, 11 December 2009</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 13:</td> <td colspan="2" class="diff-lineno">Line 13:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>&lt;biblio&gt;</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>&lt;biblio&gt;</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">#ODwyer-2009 pmid=19336583</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#ODwyer-2009 pmid=19909313</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#ODwyer-2009 pmid=19909313</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#Wu-2008b pmid=18851752</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#Wu-2008b pmid=18851752</div></td></tr> <!-- diff generator: internal 2013-06-19 12:53:28 --> </table>

Jeisen http://www.openwetware.org/index.php?title=ISEEM:Publications%2C_Talks_%26_Media&diff=374234&oldid=prev 2009-12-11T17:49:59Z

<p><span class="autocomment">Publications</span></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 17:49, 11 December 2009</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 13:</td> <td colspan="2" class="diff-lineno">Line 13:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>&lt;biblio&gt;</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>&lt;biblio&gt;</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>#ODwyer-2009 pmid=<del class="diffchange diffchange-inline">9909313</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>#ODwyer-2009 pmid=<ins class="diffchange diffchange-inline">19909313</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#Wu-2008b pmid=18851752</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#Wu-2008b pmid=18851752</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#Wu-2008 pmid=18596968</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#Wu-2008 pmid=18596968</div></td></tr> <!-- diff generator: internal 2013-06-19 12:53:28 --> </table>

Jeisen http://www.openwetware.org/index.php?title=ISEEM:Publications%2C_Talks_%26_Media&diff=374233&oldid=prev 2009-12-11T17:49:48Z

<p><span class="autocomment">Publications</span></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 17:49, 11 December 2009</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 13:</td> <td colspan="2" class="diff-lineno">Line 13:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>&lt;biblio&gt;</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>&lt;biblio&gt;</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>#ODwyer-2009 pmid= 9909313</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>#ODwyer-2009 pmid=9909313</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#Wu-2008b pmid=18851752</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#Wu-2008b pmid=18851752</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#Wu-2008 pmid=18596968</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#Wu-2008 pmid=18596968</div></td></tr> <!-- diff generator: internal 2013-06-19 12:53:28 --> </table>

Jeisen http://www.openwetware.org/index.php?title=ISEEM:Publications%2C_Talks_%26_Media&diff=374232&oldid=prev 2009-12-11T17:49:33Z

<p><span class="autocomment">Publications</span></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 17:49, 11 December 2009</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 13:</td> <td colspan="2" class="diff-lineno">Line 13:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>&lt;biblio&gt;</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>&lt;biblio&gt;</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">#ODwyer-2009 pmid= 9909313</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#Wu-2008b pmid=18851752</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#Wu-2008b pmid=18851752</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#Wu-2008 pmid=18596968</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#Wu-2008 pmid=18596968</div></td></tr> <!-- diff generator: internal 2013-06-19 12:53:28 --> </table>

Jeisen http://www.openwetware.org/index.php?title=ISEEM:Publications%2C_Talks_%26_Media&diff=289857&oldid=prev 2009-02-27T16:55:07Z

<p><span class="autocomment">Software</span></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 16:55, 27 February 2009</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 5:</td> <td colspan="2" class="diff-lineno">Line 5:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#AMPHORA</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#AMPHORA</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#* Download here http://bobcat.genomecenter.ucdavis.edu/AMPHORA</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#* Download here http://bobcat.genomecenter.ucdavis.edu/AMPHORA</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>#* Described in &quot;Wu M and Eisen JA. A simple, fast, and accurate method of phylogenomic inference. Genome Biol 2008 Oct 13; 9(10) R151. doi:10.1186/gb-2008-9-10-r151 &quot; available here http://genomebiology.com/2008/9/10/R151#B41</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>#* Described in &quot;Wu M and Eisen JA. A simple, fast, and accurate method of phylogenomic inference. Genome Biol 2008 Oct 13; 9(10) R151. doi:10.1186/gb-2008-9-10-r151 &quot; <ins class="diffchange diffchange-inline">and </ins>available here http://genomebiology.com/2008/9/10/R151#B41</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#STAP</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#STAP</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#* Download here http://bobcat.genomecenter.ucdavis.edu/mediawiki/index.php/STAP_download</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#* Download here http://bobcat.genomecenter.ucdavis.edu/mediawiki/index.php/STAP_download</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>#* <del class="diffchange diffchange-inline">Paper </del>here http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0002566</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>#* <ins class="diffchange diffchange-inline">Described in Wu D, Hartman A, Ward N, and Eisen JA. An automated phylogenetic tree-based small subunit rRNA taxonomy and alignment pipeline (STAP). PLoS ONE 2008 Jul 2; 3(7) e2566. doi:10.1371/journal.pone.0002566&nbsp; and available </ins>here http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0002566</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Publications ==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Publications ==</div></td></tr> <!-- diff generator: internal 2013-06-19 12:53:28 --> </table>

Jeisen http://www.openwetware.org/index.php?title=ISEEM:Publications%2C_Talks_%26_Media&diff=289854&oldid=prev 2009-02-27T16:54:28Z

<p><span class="autocomment">Software</span></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 16:54, 27 February 2009</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 5:</td> <td colspan="2" class="diff-lineno">Line 5:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#AMPHORA</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#AMPHORA</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#* Download here http://bobcat.genomecenter.ucdavis.edu/AMPHORA</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#* Download here http://bobcat.genomecenter.ucdavis.edu/AMPHORA</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>#* <del class="diffchange diffchange-inline">Paper </del>here http://genomebiology.com/2008/9/10/R151#B41</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>#* <ins class="diffchange diffchange-inline">Described in &quot;Wu M and Eisen JA. A simple, fast, and accurate method of phylogenomic inference. Genome Biol 2008 Oct 13; 9(10) R151. doi:10.1186/gb-2008-9-10-r151 &quot; available </ins>here http://genomebiology.com/2008/9/10/R151#B41</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#STAP</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#STAP</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#* Download here http://bobcat.genomecenter.ucdavis.edu/mediawiki/index.php/STAP_download</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#* Download here http://bobcat.genomecenter.ucdavis.edu/mediawiki/index.php/STAP_download</div></td></tr> <!-- diff generator: internal 2013-06-19 12:53:28 --> </table>

Jeisen