Immunoprecipitation of RASSLs: Difference between revisions

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==Overview==
==Overview==


Replace this sentence with a brief description of the protocol and its goal.
List of reagents is not yet complete
 
==Materials==
List reagents, supplies and equipment necessary to perform the protocol here.  For those materials which have their own OWW pages, link to that page.  Alternatively, links to the suppliers' page on that material are also appropriate.
 
*supply 1 (i.e. tubes of a certain size? spreaders?)
*reagent 1
*X μL reagent 2
**component A (reagent 2 is made up of multiple components)
**component B
*equipment 1
*equipment 2


==Procedure==
==Procedure==
1. Add the following to the supernatant of the solubilized sample:
1. Add the following to the supernatant of the solubilized sample:


    * 2 ml of 1 M CaCl2
* 2 ml of 1 M CaCl2
    * 2 ml of M1-Antibody (1mg/µl) (Eastman Kodak Co. #IB13007)
* 2 ml of M1-Antibody (1mg/µl) (Eastman Kodak Co. #IB13007)
    * 15 ml of 50% suspension Prot-A agarose beads (Sigma # P-2545) *IP Standard, use 50 ng of a flag-tagged protein.  
* 15 ml of 50% suspension Prot-A agarose beads (Sigma # P-2545) *IP Standard, use 50 ng of a flag-tagged protein.  


2. Incubate overnight at 4°C on a rotator.
2. Incubate overnight at 4°C on a rotator.
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11. Transfer supernatant to new tube using flat tips or load supernatant on gel using flat tips. Pipet carefully and try not to disturb bead pellet.
11. Transfer supernatant to new tube using flat tips or load supernatant on gel using flat tips. Pipet carefully and try not to disturb bead pellet.
Buffers
Buffers
TBS-T Ca++ Wash Buffer:
TBS-T Ca++ Wash Buffer:


    * 1x TBS (50 mM Tris-HCl, pH 7.4, 150 mM NaCl)
*1x TBS (50 mM Tris-HCl, pH 7.4, 150 mM NaCl)
    * 0.1% Tween-20
* 0.1% Tween-20
    * 1 mM CaCl2  
* 1 mM CaCl2  


Sample Buffer:
Sample Buffer:


    * 2x Tris-Glycine SDS Sample Buffer (Novex #LC2676) plus 5% beta-mercaptoethanol dilute to 1x with ddH20  
*2x Tris-Glycine SDS Sample Buffer (Novex #LC2676) plus 5% beta-mercaptoethanol dilute to 1x with ddH20  
    Tribromoethanol is extremely light sensitive. Its degradative products, HBr and dibromylacetaldehyde, are both very toxic.  
 
Tribromoethanol is extremely light sensitive. Its degradative products, HBr and dibromylacetaldehyde, are both very toxic.
 
==Notes==
==Notes==
Please feel free to post comments, questions, or improvements to this protocol. Happy to have your input!
No further notes are available at this time.
#List troubleshooting tips here. 
#You can also link to FAQs/tips provided by other sources such as the manufacturer or other websites.
#Anecdotal observations that might be of use to others can also be posted here. 
 
Please sign your name to your note by adding <font face="courier"><nowiki>'''*~~~~''':</nowiki></font> to the beginning of your tip.


==References==
==References==
'''Relevant papers and books'''
No references at this time
 
If this protocol has papers or books associated with it, list those references here. Below is an example for formatting purposes. See the [[OpenWetWare:Biblio]] page for more information.
<biblio>
#Goldbeter-PNAS-1981 pmid=6947258
#Jacob-JMB-1961 pmid=13718526
#Ptashne-Genetic-Switch isbn=0879697164
</biblio>


==Contact==
==Contact==

Latest revision as of 12:44, 24 June 2009

Overview

List of reagents is not yet complete

Procedure

1. Add the following to the supernatant of the solubilized sample:

  • 2 ml of 1 M CaCl2
  • 2 ml of M1-Antibody (1mg/µl) (Eastman Kodak Co. #IB13007)
  • 15 ml of 50% suspension Prot-A agarose beads (Sigma # P-2545) *IP Standard, use 50 ng of a flag-tagged protein.

2. Incubate overnight at 4°C on a rotator.

3. Spin down beads for 1 min at 4°C at 3,000 rpm.

4. Discard supernatant using a pipet or a vacuum. Be careful not to remove beads.

5. Add 1 ml of TBS-T Ca++ Wash buffer to beads. Invert tubes a few times and spin for 1 min at room temperature at 3,000 rpm.

6. Discard supernatant using a pipet or a vacuum.

7. Repeat wash (steps No. 5 and No. 6).

8. Add 50 ml of 1x electrophoresis sample buffer to beads.

9. Vortex. Boil sample for 5 minutes.

10. Vortex. Spin for 2 min at room temperature at 5,000 rpm.

11. Transfer supernatant to new tube using flat tips or load supernatant on gel using flat tips. Pipet carefully and try not to disturb bead pellet.

Buffers

TBS-T Ca++ Wash Buffer:

  • 1x TBS (50 mM Tris-HCl, pH 7.4, 150 mM NaCl)
  • 0.1% Tween-20
  • 1 mM CaCl2

Sample Buffer:

  • 2x Tris-Glycine SDS Sample Buffer (Novex #LC2676) plus 5% beta-mercaptoethanol dilute to 1x with ddH20

Tribromoethanol is extremely light sensitive. Its degradative products, HBr and dibromylacetaldehyde, are both very toxic.

Notes

No further notes are available at this time.

References

No references at this time

Contact

  • Who has experience with this protocol?

or instead, discuss this protocol.