Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals: Difference between revisions
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'''Spring 2008''' | '''Spring 2008''' | ||
'''Instructor:''' [[User:Vincent Rouilly| Vincent Rouilly]] | '''Instructor:''' [[User:Vincent Rouilly| Vincent Rouilly]]. | ||
'''Room:''' Biochemistry building, 310. | '''Room:''' Biochemistry building, 310. | ||
| Line 14: | Line 14: | ||
==Announcements== | ==Announcements== | ||
*[[User:Johnsy|Johnsy]] 04:57, 31 January 2008 (CST): Practical 2 Postponed until further notice. | *'''[[User:Vincent Rouilly|Vincent]] 08:43, 5 February 2008 (CST)''': Practical 2 has been rescheduled, and will run this thurs (7th Feb) from 9-12 in room 311 Biochem. | ||
*'''[[User:Johnsy|Johnsy]] 04:57, 31 January 2008 (CST)''': Practical 2 Postponed until further notice. | |||
*'''[[User:Vincent Rouilly|Vincent]] 11:08, 18 January 2008 (CST)''': First practical report due on '''Monday 21st January, before 5pm'''. You can submit by emailing to me (PDF or Word format). | *'''[[User:Vincent Rouilly|Vincent]] 11:08, 18 January 2008 (CST)''': First practical report due on '''Monday 21st January, before 5pm'''. You can submit by emailing to me (PDF or Word format). | ||
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Spring 2008
Instructor: Vincent Rouilly.
Room: Biochemistry building, 310.
Welcome!
Announcements
- Vincent 08:43, 5 February 2008 (CST): Practical 2 has been rescheduled, and will run this thurs (7th Feb) from 9-12 in room 311 Biochem.
- Johnsy 04:57, 31 January 2008 (CST): Practical 2 Postponed until further notice.
- Vincent 11:08, 18 January 2008 (CST): First practical report due on Monday 21st January, before 5pm. You can submit by emailing to me (PDF or Word format).
- Vincent 06:43, 18 January 2008 (CST): Practical-2 re-run planned on January 31st. Practical-2 report not due before February 7th, 5pm.
- Vincent 04:06, 15 January 2008 (CST): Computer Lab, planned on Tuesday 15th Jan POSTPONED . Computer Lab on Thursday 17th Jan (9-12), CONFIRMED
- Registration to OpenWetWare required (Join OWW)
- You can find the latest changes to the course wiki at Recent changes for the course
- You can find old announcements here
Computer Lab Overview
Practical 1: Introduction (3h)
- Short Presentation: "All the models are wrong, but some of them are useful", George Box.
- Short Presentation: CellDesigner Crash Course
- Features and GUI
- Kinetic Simulations
- SBML
- Hands-on: Build your first kinetic models.
Practical 2: Gene Expression Modelling (3h)
- Constitutive Gene Expression
- Activated and Repressed Gene Expression
- Positive and Negative Feedback Gene Expression
Practical 3: Genetic Circuit Modelling (3h)
- Genetic Inverter Characterisation
- Repressilator Characterisation
- Mystery Device Characterisation
