Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals/CellDesigner Tutorial/Compounds: Difference between revisions
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===Overview=== | ===Overview=== | ||
* CellDesigner can represent a large variety of biochemical compounds (Genes, RNA, Proteins, Receptors ... We won't use all of them) | {| | ||
* Each biochemical entity as a specific symbol. | |- | ||
| | |||
[[Image: | * CellDesigner can represent a large variety of '''biochemical compounds''' (Genes, RNA, Proteins, Receptors ... We won't use all of them) | ||
* Each biochemical entity as a '''specific symbol''' (see figure). | |||
| | |||
[[Image:CellDesigner-Symbols.png|400px|CellDesigner Compound Symbols]] | |||
|} | |||
===Functions related to compounds=== | ===Functions related to compounds=== | ||
* Create a new compound: Select an icon (placed in the tool bar) by click and then click a point on the canvas | * '''Create''' a new compound: Select an icon (placed in the tool bar) by click and then click a point on the canvas | ||
(draw area), where you want to place the new. | (draw area), where you want to place the new. | ||
* Delete a compound: Select the compound | * '''Delete''' a compound: Select the compound. Menu: Edit --> Delete. | ||
* Edit a compound : Double-click an object in the list window | * '''Edit''' a compound : Double-click an object in the list window, or click with the right mouse button on the target in the draw area, then select [Edit Species]. The dialog box will pop-up to edit the contents of each Species. | ||
or click with the right mouse button on the target in the draw area, then select [Edit Species]. | |||
The dialog will | |||
===Resources=== | ===Resources=== | ||
* [http://www.systems-biology.org/cd/help/CDH_Species_T.html Compounds tutorial] | * [http://www.systems-biology.org/cd/help/CDH_Species_T.html Compounds tutorial] |
Revision as of 06:53, 12 January 2008
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CellDesigner Tutorial
Overview
|
- Create a new compound: Select an icon (placed in the tool bar) by click and then click a point on the canvas
(draw area), where you want to place the new.
- Delete a compound: Select the compound. Menu: Edit --> Delete.
- Edit a compound : Double-click an object in the list window, or click with the right mouse button on the target in the draw area, then select [Edit Species]. The dialog box will pop-up to edit the contents of each Species.