Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals/CellDesigner Tutorial/Compounds: Difference between revisions
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'''CellDesigner Tutorial''' | |||
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<li>[[Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals/CellDesigner Tutorial/Kinetic Simulation |Kinetic Model]]</li> | <li>[[Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals/CellDesigner Tutorial/Kinetic Simulation |Kinetic Model]]</li> | ||
<li>[[Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals/CellDesigner Tutorial/Simulation Panel |Simulation Panel]]</li> | <li>[[Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals/CellDesigner Tutorial/Simulation Panel |Simulation Panel]]</li> | ||
<li>[[Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals/CellDesigner Tutorial/Example |Example]]</li> | |||
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''... | ===Overview=== | ||
{| | |||
|- | |||
|valign=top | | |||
[[Image:CellDesigner GUI TopMenu CompoundSymbols.png|380px|CellDesigner Top Menu]] | |||
* CellDesigner can represent a large variety of '''biochemical compounds''' (Genes, RNA, Proteins, Receptors ... We won't use all of them) | |||
* Each biochemical entity as a '''specific symbol''' (see figure). | |||
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[[Image:CellDesigner-Symbols.png|340px|CellDesigner Compound Symbols]] | |||
|} | |||
===Functions related to compounds=== | |||
* '''Create''' a new compound: Select an icon (placed in the tool bar) by click and then click a point on the canvas | |||
(draw area), where you want to place the new. | |||
* '''Delete''' a compound: Select the compound. Menu: Edit --> Delete. | |||
* '''Edit''' a compound : Double-click an object in the list window, or click with the right mouse button on the target in the draw area, then select [Edit Species]. The dialog box will pop-up to edit the contents of each Species. | |||
===Resources=== | |||
* [http://www.systems-biology.org/cd/help/CDH_Species_T.html Compounds tutorial] |
Latest revision as of 07:23, 12 January 2008
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CellDesigner Tutorial
Overview
|
- Create a new compound: Select an icon (placed in the tool bar) by click and then click a point on the canvas
(draw area), where you want to place the new.
- Delete a compound: Select the compound. Menu: Edit --> Delete.
- Edit a compound : Double-click an object in the list window, or click with the right mouse button on the target in the draw area, then select [Edit Species]. The dialog box will pop-up to edit the contents of each Species.