Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals/CellDesigner Tutorial/Compounds: Difference between revisions
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{{Template:ImperialCollege Spring2008 SyntheticBiologyCourse ComputerModellingPractical}} | {{Template:ImperialCollege Spring2008 SyntheticBiologyCourse ComputerModellingPractical}} | ||
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<center><font face="trebuchet ms" style="color:#2171B7" size="5"> | |||
'''CellDesigner Tutorial''' | |||
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<li>[[Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals/CellDesigner Tutorial/Kinetic Simulation |Kinetic Model]]</li> | <li>[[Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals/CellDesigner Tutorial/Kinetic Simulation |Kinetic Model]]</li> | ||
<li>[[Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals/CellDesigner Tutorial/Simulation Panel |Simulation Panel]]</li> | <li>[[Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals/CellDesigner Tutorial/Simulation Panel |Simulation Panel]]</li> | ||
<li>[[Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals/CellDesigner Tutorial/Example |Example]]</li> | |||
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===Overview=== | ===Overview=== | ||
* CellDesigner can represent a large variety of biochemical compounds (Genes, RNA, Proteins, Receptors ... We won't use all of them) | {| | ||
* Each biochemical entity as a specific symbol. | |- | ||
|valign=top | | |||
[[Image: | [[Image:CellDesigner GUI TopMenu CompoundSymbols.png|380px|CellDesigner Top Menu]] | ||
* CellDesigner can represent a large variety of '''biochemical compounds''' (Genes, RNA, Proteins, Receptors ... We won't use all of them) | |||
* Each biochemical entity as a '''specific symbol''' (see figure). | |||
| | |||
[[Image:CellDesigner-Symbols.png|340px|CellDesigner Compound Symbols]] | |||
|} | |||
===Functions related to compounds=== | ===Functions related to compounds=== | ||
* Create a new compound: Select an icon (placed in the tool bar) by click and then click a point on the canvas | * '''Create''' a new compound: Select an icon (placed in the tool bar) by click and then click a point on the canvas | ||
(draw area), where you want to place the new. | (draw area), where you want to place the new. | ||
* Delete a compound: Select the compound | * '''Delete''' a compound: Select the compound. Menu: Edit --> Delete. | ||
* Edit a compound : Double-click an object in the list window | * '''Edit''' a compound : Double-click an object in the list window, or click with the right mouse button on the target in the draw area, then select [Edit Species]. The dialog box will pop-up to edit the contents of each Species. | ||
or click with the right mouse button on the target in the draw area, then select [Edit Species]. | |||
The dialog will | |||
===Resources=== | ===Resources=== | ||
* [http://www.systems-biology.org/cd/help/CDH_Species_T.html Compounds tutorial] | * [http://www.systems-biology.org/cd/help/CDH_Species_T.html Compounds tutorial] | ||
Latest revision as of 07:23, 12 January 2008
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CellDesigner Tutorial
Overview
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- Create a new compound: Select an icon (placed in the tool bar) by click and then click a point on the canvas
(draw area), where you want to place the new.
- Delete a compound: Select the compound. Menu: Edit --> Delete.
- Edit a compound : Double-click an object in the list window, or click with the right mouse button on the target in the draw area, then select [Edit Species]. The dialog box will pop-up to edit the contents of each Species.
