Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals/CellDesigner Tutorial/Simulation Panel: Difference between revisions
From OpenWetWare
Jump to navigationJump to search
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
__NOTOC__ | __NOTOC__ | ||
{{Template:ImperialCollege Spring2008 SyntheticBiologyCourse ComputerModellingPractical}} | {{Template:ImperialCollege Spring2008 SyntheticBiologyCourse ComputerModellingPractical}} | ||
<div style="padding: 10px; width: 720px; border: 5px solid #B3CD4E;"> | <div style="padding: 10px; width: 720px; border: 5px solid #B3CD4E;"> | ||
<div style="padding: 0px; width: 720px; color: #2171B7; background-color: #B3CD4E"> | <div style="padding: 0px; width: 720px; color: #2171B7; background-color: #B3CD4E"> | ||
<center><font face="trebuchet ms" style="color:#2171B7" size="5"> | <center><font face="trebuchet ms" style="color:#2171B7" size="5"> | ||
Line 10: | Line 7: | ||
</font><br></center> | </font><br></center> | ||
</div> | </div> | ||
<div class="tabs"> | <div class="tabs"> | ||
<ul> | <ul> | ||
Line 19: | Line 15: | ||
<li>[[Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals/CellDesigner Tutorial/Kinetic Simulation |Kinetic Model]]</li> | <li>[[Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals/CellDesigner Tutorial/Kinetic Simulation |Kinetic Model]]</li> | ||
<li id="current">[[Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals/CellDesigner Tutorial/Simulation Panel |Simulation Panel]]</li> | <li id="current">[[Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals/CellDesigner Tutorial/Simulation Panel |Simulation Panel]]</li> | ||
<li>[[Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals/CellDesigner Tutorial/Example |Example]]</li> | |||
</ul> | </ul> | ||
</div> | </div> | ||
<br style="clear:both"> | <br style="clear:both"> | ||
=Running a Simulation= | =Running a Simulation= | ||
===Overview=== | ===Overview=== | ||
* The | {| | ||
|- | |||
|valign=top| | |||
* The '''Control Panel''' is designed to assist the users to simulate directly from CellDesigner, controlling the amounts and parameters of the Species. Calling directly SBML ODE Solver from CellDesigner, '''Control Panel''' enables you to specify the details of '''parameters''', '''changing amount''', conducting '''parameter search''', and '''interactive simulation''' with intuitive manner. | |||
| | |||
[[Image:CellDesigner-Simulation-2.png|300px|CellDesigner Simulation Panel]] | |||
|} | |||
===Simulation Panel Functions=== | ===Simulation Panel Functions=== |
Latest revision as of 07:39, 12 January 2008
<html> <body> <!-- Start of StatCounter Code --> <script type="text/javascript"> var sc_project=3315875; var sc_invisible=0; var sc_partition=36; var sc_security="779debd0"; </script> <script type="text/javascript" src="http://www.statcounter.com/counter/counter_xhtml.js"></script><noscript><div class="statcounter"><a class="statcounter" href="http://www.statcounter.com/"><img class="statcounter" src="http://c37.statcounter.com/3315875/0/779debd0/0/" alt="web metrics" /></a></div></noscript> <!-- End of StatCounter Code --> </body> </html>
CellDesigner Tutorial
Running a Simulation
Overview
|
Simulation Panel Functions
- Change the Initial Quantities of Species and Parameter Value
- Change Amount during Simulation
- Parameter Scan
- Interactive Simulation
- Plot Area