Imperial College/Courses/Spring2008/Synthetic Biology/Resources/Literature

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{{Template:ImperialCollege Spring2008 SyntheticBiologyCourse}}
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<font color=green> Feel free to add articles ...</font>
<font color=green> Feel free to add articles ...</font>
<div style="padding: 0px; width: 700px; color: #FFFFFF; background-color: #2171B7">
<div style="padding: 0px; width: 700px; color: #FFFFFF; background-color: #2171B7">
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<font face="trebuchet ms" style="color:#FFFFFF" size="3">''Synthetic Biology General Reviews''</font><br>
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<font face="trebuchet ms" style="color:#FFFFFF" size="3">''General Reviews on Synthetic Biology''</font><br>
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#4 pmid=12432407
#4 pmid=12432407
#5 pmid=17289915
#5 pmid=17289915
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#6 pmid=17710092
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#7 pmid=18205292
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#8 pmid=18091727
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#9 pmid=16019200
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#10 pmid=16954140
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#11 pmid=16255644
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#12 pmid=17151344
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#13 pmid=16306982
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#14 pmid=18983935
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#15 pmid=16892318
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#16 pmid=17251159
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#17 pmid=17460793
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#18 pmid=17269152
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#19 pmid=17548240
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#20 pmid=19016883
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#21 pmid=14527313
</biblio>
</biblio>
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<div style="padding: 0px; width: 700px; color: #FFFFFF; background-color: #2171B7">
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<font face="trebuchet ms" style="color:#FFFFFF" size="3">''Seminal Papers''</font><br>
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</div>
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* [http://dspace.mit.edu/handle/1721.1/29793 'Cellular Gate Technology', 1998, Knight, Thomas F. Sussman, Gerald Jay]
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* [http://dspace.mit.edu/handle/1721.1/29794 'A Standard Parts List for Biological Circuitry', 1999, Arkin, Adam Endy, Drew]
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* [http://hdl.handle.net/1721.1/8228 'Cellular computation and communications using engineered genetic regulatory networks', 2001, Ron Weiss]
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<biblio>
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#1 pmid=10659856
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#2 pmid=10659857
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</biblio>
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<div style="padding: 0px; width: 700px; color: #FFFFFF; background-color: #2171B7">
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<font face="trebuchet ms" style="color:#FFFFFF" size="3">''Inspiring Synthetic Biology Projects''</font><br>
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<font face="trebuchet ms" style="color:#FFFFFF" size="3">''Foundational technologies / Standardisation effort''</font><br>
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<biblio>
<biblio>
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#1 pmid=17700541
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#1 pmid=18612298
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#2 pmid=16330045
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#2 pmid=18612302
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#3 pmid=18983935
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#4 pmid=18628824
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#5 pmid=18687496
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#6 pmid=19111926
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#7 pmid=16711359
</biblio>
</biblio>
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<div style="padding: 0px; width: 700px; color: #FFFFFF; background-color: #2171B7">
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<font face="trebuchet ms" style="color:#FFFFFF" size="3">''Cool/Inspiring Synthetic Biology Projects''</font><br>
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</div>
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<biblio>
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#1 pmid=16729053
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#2 pmid=17700541
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#3 pmid=17662949
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#4 pmid=16330045
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#5 pmid=17592147
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#6 pmid=17652177
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#7 pmid=15858574
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#8 pmid=15064770
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#9 pmid=12451174
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#10 pmid=15096621
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#11 pmid=17675429
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#12 pmid=15994559
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#13 pmid=15875027
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#14 pmid=17652177
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</biblio>
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<div style="padding: 0px; width: 700px; color: #FFFFFF; background-color: #2171B7">
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<font face="trebuchet ms" style="color:#FFFFFF" size="3">''Expression Chassis Related''</font><br>
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</div>
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<biblio>
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#1 pmid=12382319
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#2 pmid=17850764
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#3 pmid=16924266
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#4 pmid=17668286
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#5 pmid=16224117
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#6 pmid=15591347
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#7 pmid=15498568
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#8 pmid=16351070
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#9 pmid=16408021
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</biblio>
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<div style="padding: 0px; width: 700px; color: #FFFFFF; background-color: #2171B7">
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<font face="trebuchet ms" style="color:#FFFFFF" size="3">''DNA Assembly Related''</font><br>
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</div>
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# [http://hdl.handle.net/1721.1/21168 Idempotent Vector Design for Standard Assembly of Biobricks, Knight T. et al (2003)]
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# [http://hdl.handle.net/1721.1/32535 A New Biobrick Assembly Strategy Designed for Facile Protein Engineering, Phillips, Silver (2006)]
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<div style="padding: 0px; width: 700px; color: #FFFFFF; background-color: #2171B7">
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<font face="trebuchet ms" style="color:#FFFFFF" size="3">''Modelling Related''</font><br>
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</div>
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* [http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=4282302  Dynamics and Control of Synthetic Bio-molecular Networks (Del Vecchio and Sontag, 2007)]
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* [http://www.nature.com/msb/journal/v4/n1/full/msb4100204.html Modular cell biology: retroactivity and insulation (Del Vecchio et al, 2007)]
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* [http://www.weizmann.ac.il/mcb/UriAlon/bookUri.html An Introduction to Systems Biology (Uri Alon)]
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#3 pmid=17355173
#3 pmid=17355173
#4 pmid=17551512
#4 pmid=17551512
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#5 pmid=17557094
</biblio>
</biblio>

Current revision

Spring 2008 - Introduction to Synthetic Biology

Home        Syllabus        Resources        Literature

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Feel free to add articles ...

General Reviews on Synthetic Biology

  1. Voigt CA. . pmid:16978856. PubMed HubMed [1]
  2. Endy D. . pmid:16306983. PubMed HubMed [2]
  3. Andrianantoandro E, Basu S, Karig DK, and Weiss R. . pmid:16738572. PubMed HubMed [3]
  4. Hasty J, McMillen D, and Collins JJ. . pmid:12432407. PubMed HubMed [4]
  5. Drubin DA, Way JC, and Silver PA. . pmid:17289915. PubMed HubMed [5]
  6. Yeh BJ and Lim WA. . pmid:17710092. PubMed HubMed [6]
  7. Keasling JD. . pmid:18205292. PubMed HubMed [7]
  8. Serrano L. . pmid:18091727. PubMed HubMed [8]
  9. McDaniel R and Weiss R. . pmid:16019200. PubMed HubMed [9]
  10. Heinemann M and Panke S. . pmid:16954140. PubMed HubMed [10]
  11. Sismour AM and Benner SA. . pmid:16255644. PubMed HubMed [11]
  12. Forster AC and Church GM. . pmid:17151344. PubMed HubMed [12]
  13. Sprinzak D and Elowitz MB. . pmid:16306982. PubMed HubMed [13]
  14. Lucks JB, Qi L, Whitaker WR, and Arkin AP. . pmid:18983935. PubMed HubMed [14]
  15. Fu P. . pmid:16892318. PubMed HubMed [15]
  16. Marguet P, Balagadde F, Tan C, and You L. . pmid:17251159. PubMed HubMed [16]
  17. Tan C, Song H, Niemi J, and You L. . pmid:17460793. PubMed HubMed [17]
  18. Pleiss J. . pmid:17269152. PubMed HubMed [18]
  19. Meyer A, Pellaux R, and Panke S. . pmid:17548240. PubMed HubMed [19]
  20. Michalodimitrakis K and Isalan M. . pmid:19016883. PubMed HubMed [20]
  21. Kaern M, Blake WJ, and Collins JJ. . pmid:14527313. PubMed HubMed [21]
All Medline abstracts: PubMed HubMed

Seminal Papers

  1. Elowitz MB and Leibler S. . pmid:10659856. PubMed HubMed [1]
  2. Gardner TS, Cantor CR, and Collins JJ. . pmid:10659857. PubMed HubMed [2]
All Medline abstracts: PubMed HubMed

Foundational technologies / Standardisation effort

  1. Arkin A. . pmid:18612298. PubMed HubMed [1]
  2. Canton B, Labno A, and Endy D. . pmid:18612302. PubMed HubMed [2]
  3. Lucks JB, Qi L, Whitaker WR, and Arkin AP. . pmid:18983935. PubMed HubMed [3]
  4. Peccoud J, Blauvelt MF, Cai Y, Cooper KL, Crasta O, DeLalla EC, Evans C, Folkerts O, Lyons BM, Mane SP, Shelton R, Sweede MA, and Waldon SA. . pmid:18628824. PubMed HubMed [4]
  5. Goler JA, Bramlett BW, and Peccoud J. . pmid:18687496. PubMed HubMed [5]
  6. Czar MJ, Anderson JC, Bader JS, and Peccoud J. . pmid:19111926. PubMed HubMed [6]
  7. Bio FAB Group, Baker D, Church G, Collins J, Endy D, Jacobson J, Keasling J, Modrich P, Smolke C, and Weiss R. . pmid:16711359. PubMed HubMed [7]
All Medline abstracts: PubMed HubMed


Cool/Inspiring Synthetic Biology Projects

  1. Chan LY, Kosuri S, and Endy D. . pmid:16729053. PubMed HubMed [1]
  2. Anderson JC, Voigt CA, and Arkin AP. . pmid:17700541. PubMed HubMed [2]
  3. Deans TL, Cantor CR, and Collins JJ. . pmid:17662949. PubMed HubMed [3]
  4. Anderson JC, Clarke EJ, Arkin AP, and Voigt CA. . pmid:16330045. PubMed HubMed [4]
  5. Lu TK and Collins JJ. . pmid:17592147. PubMed HubMed [5]
  6. Murphy KF, Balázsi G, and Collins JJ. . pmid:17652177. PubMed HubMed [6]
  7. Basu S, Gerchman Y, Collins CH, Arnold FH, and Weiss R. . pmid:15858574. PubMed HubMed [7]
  8. You L, Cox RS 3rd, Weiss R, and Arnold FH. . pmid:15064770. PubMed HubMed [8]
  9. Yokobayashi Y, Weiss R, and Arnold FH. . pmid:12451174. PubMed HubMed [9]
  10. Basu S, Mehreja R, Thiberge S, Chen MT, and Weiss R. . pmid:15096621. PubMed HubMed [10]
  11. Hawkins AC, Arnold FH, Stuermer R, Hauer B, and Leadbetter JR. . pmid:17675429. PubMed HubMed [11]
  12. Balagaddé FK, You L, Hansen CL, Arnold FH, and Quake SR. . pmid:15994559. PubMed HubMed [12]
  13. Fung E, Wong WW, Suen JK, Bulter T, Lee SG, and Liao JC. . pmid:15875027. PubMed HubMed [13]
  14. Murphy KF, Balázsi G, and Collins JJ. . pmid:17652177. PubMed HubMed [14]
All Medline abstracts: PubMed HubMed


Expression Chassis Related

  1. Luisi PL. . pmid:12382319. PubMed HubMed [1]
  2. Murtas G, Kuruma Y, Bianchini P, Diaspro A, and Luisi PL. . pmid:17850764. PubMed HubMed [2]
  3. Forster AC and Church GM. . pmid:16924266. PubMed HubMed [3]
  4. Murtas G. . pmid:17668286. PubMed HubMed [4]
  5. Noireaux V, Bar-Ziv R, Godefroy J, Salman H, and Libchaber A. . pmid:16224117. PubMed HubMed [5]
  6. Noireaux V and Libchaber A. . pmid:15591347. PubMed HubMed [6]
  7. Ishikawa K, Sato K, Shima Y, Urabe I, and Yomo T. . pmid:15498568. PubMed HubMed [7]
  8. Rackham O and Chin JW. . pmid:16351070. PubMed HubMed [8]
  9. Rackham O and Chin JW. . pmid:16408021. PubMed HubMed [9]
All Medline abstracts: PubMed HubMed


DNA Assembly Related

  1. Idempotent Vector Design for Standard Assembly of Biobricks, Knight T. et al (2003)
  2. A New Biobrick Assembly Strategy Designed for Facile Protein Engineering, Phillips, Silver (2006)

Modelling Related

Synthetic Biology: Ethics and Impact on Society

  1. Check E. . pmid:16107798. PubMed HubMed [1]
  2. Check E. . pmid:16724023. PubMed HubMed [2]
  3. Rai A and Boyle J. . pmid:17355173. PubMed HubMed [3]
  4. Henkel J and Maurer SM. . pmid:17551512. PubMed HubMed [4]
  5. Bügl H, Danner JP, Molinari RJ, Mulligan JT, Park HO, Reichert B, Roth DA, Wagner R, Budowle B, Scripp RM, Smith JA, Steele SJ, Church G, and Endy D. . pmid:17557094. PubMed HubMed [5]
All Medline abstracts: PubMed HubMed
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