Individual Journal Week 14: Difference between revisions
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==Electronic Laboratory Notebook== | ==Electronic Laboratory Notebook== | ||
* | *Worksheets "network," "network_weights," and "network_thresholds": Transposed Regulation Matrix copied into each of worksheets | ||
*Worksheet "degradation_rates": SystematicName column added, names found using YEASTRACT. Degradation rates added. HOT1, HMO1, MAL33 rates not found, thus, value "0.027182242" used. | *Worksheet "degradation_rates": SystematicName column added, names found using YEASTRACT. Degradation rates added. HOT1, HMO1, MAL33 rates not found, thus, value "0.027182242" used. | ||
*Worksheet "production_rates": "SystematicName" and "StandardName" columns copied and pasted. Degradation rates doubled and pasted as Production Rates. | *Worksheet "production_rates": "SystematicName" and "StandardName" columns copied and pasted. Degradation rates doubled and pasted as Production Rates. | ||
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*Worksheet "network_b": Standard names pasted, "threshold" values at 0.000 | *Worksheet "network_b": Standard names pasted, "threshold" values at 0.000 | ||
*File uploaded to LionShare. | *File uploaded to LionShare. | ||
==Useful Links== | |||
*[[BIOL398-03/S13:Week 13|Assignment Week 14]] | |||
*[[User:Helena M. Olivieri|Helena M. Olivieri]] | |||
*[[BIOL398-03/S13|Home]] | |||
[[Category:BIOL398-03/S13]] | |||
Latest revision as of 22:42, 25 April 2013
Electronic Laboratory Notebook
- Worksheets "network," "network_weights," and "network_thresholds": Transposed Regulation Matrix copied into each of worksheets
- Worksheet "degradation_rates": SystematicName column added, names found using YEASTRACT. Degradation rates added. HOT1, HMO1, MAL33 rates not found, thus, value "0.027182242" used.
- Worksheet "production_rates": "SystematicName" and "StandardName" columns copied and pasted. Degradation rates doubled and pasted as Production Rates.
- Worksheet "log2_concentrations: "SystematicName" and "StandardName" columns copied and pasted. Data from Week 9 used. Average Log Fold Changes values inserted with respect to specific genes and times "15," "30," and "60."
- Worksheet "concentration_sigmas": standard deviations of specific genes calculated at 15, 30, and 60 by using values from Week 9 assignment. Standard deviation of each set of values calculated on separate sheet.
- Worksheet "optimization_parameters": unedited
- Worksheet "Simulation_times": Expression stimulated from 0 to 60 minutes, in 5 minute increments.
- Worksheet "network_b": Standard names pasted, "threshold" values at 0.000
- File uploaded to LionShare.
