Isaiah M. Castaneda Week 12: Difference between revisions

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===Cy5===
===Cy5===
*hp0906KO total RNA (C1)
*hp0906KO total RNA (C1)
:[[Media:MBAD_32063.txt|MBAD_32063.txt]]
*CCUG17874 total RNA (C1)
*CCUG17874 total RNA (C1)
:[[Media:MBAD_32085.txt|MBAD_32085.txt]]
*hp0906KO total RNA (B1)
*hp0906KO total RNA (B1)
:[[Media:MBAD_32065.txt|MBAD_32065.txt]]
*hp0906KO total RNA (A1)
*hp0906KO total RNA (A1)
:[[Media:MBAD_32067.txt|MBAD_32067.txt]]
*hp0958 KO total RNA (B1)
*hp0958 KO total RNA (B1)
:[[Media:MBAD_32059.txt|MBAD_32059.txt]]
*hp0958 KO total RNA (A1)
*hp0958 KO total RNA (A1)
:[[Media:MBAD_32057.txt|MBAD_32057.txt]]
*CCUG17874 total RNA (B1)
*CCUG17874 total RNA (B1)
:[[Media:MBAD_32075.txt|MBAD_32075.txt]]
*CCUG17874 total RNA (A1)
*CCUG17874 total RNA (A1)
:[[Media:MBAD_32081.txt|MBAD_32081.txt]]
*hp0958 KO total RNA (C1)
*hp0958 KO total RNA (C1)
:[[Media:MBAD_32055.txt|MBAD_32055.txt]]
*CCUG17874 gDNA (B1)
*CCUG17874 gDNA (B1)
:[[Media:MBAD_32069.txt|MBAD_32069.txt]]
*CCUG17874 gDNA (A1)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23772
*CCUG17874 gDNA (A1)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23772
:[[Media:MBAD_32081.txt|MBAD_32081.txt]]


===Cy3===
===Cy3===

Revision as of 17:44, 16 November 2011

user:Isaiah M. Castaneda

Template: Isaiah M. Castaneda]

BIOL368/F11:Week_12

Link to all files from Douillard paper

http://www.ebi.ac.uk/arrayexpress/files/E-BUGS-78

Readme's

Processed

Raw

.sdrf.txt file

Array Files

Cy5

  • hp0906KO total RNA (C1)
MBAD_32063.txt
  • CCUG17874 total RNA (C1)
MBAD_32085.txt
  • hp0906KO total RNA (B1)
MBAD_32065.txt
  • hp0906KO total RNA (A1)
MBAD_32067.txt
  • hp0958 KO total RNA (B1)
MBAD_32059.txt
  • hp0958 KO total RNA (A1)
MBAD_32057.txt
  • CCUG17874 total RNA (B1)
MBAD_32075.txt
  • CCUG17874 total RNA (A1)
MBAD_32081.txt
  • hp0958 KO total RNA (C1)
MBAD_32055.txt
  • CCUG17874 gDNA (B1)
MBAD_32069.txt
  • CCUG17874 gDNA (A1)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23772
MBAD_32081.txt

Cy3

  • CCUG17874 gDNA (A3)
  • CCUG17874 gDNA (A3)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768
  • CCUG17874 gDNA (A2)
  • CCUG17874 gDNA (A1)
  • NCTC26695 gDNA (B1)
  • CCUG17874 gDNA (A5)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768
  • NCTC26695 gDNA (A1)
  • CCUG17874 gDNA (A4)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768
  • CCUG17874 gDNA (A2)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768
  • CCUG17874 gDNA (A1)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768
  • CCUG17874 gDNA (A6)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768

Hybridizations

  • Cy5 hp0906KO (C1) with Cy3 CCUG17874 (A3) → Hyb:32525
  • Cy3 CCUG17874 (A3)-23856 with Cy5 CCUG17874 (C1) → Hyb:32519
  • Cy5 hp0906KO (B1) with Cy3 CCUG17874 (A2) → Hyb:32524
  • Cy3 CCUG17874 (A1) with Cy5 hp0906KO (A1) → Hyb:32523
  • Cy5 CCUG17874 (B1) with Cy3 NCTC26695 (B1) → Hyb:32528
  • Cy3 CCUG17874 (A5) with Cy5 hp0958 KO (B1) → Hyb:32521
  • Cy3 NCTC26695 (A1) with Cy5 CCUG17874 (A1) → Hyb:32526
  • Cy5 hp0958 KO (A1) with Cy3 CCUG17874 (A4) → Hyb:32520
  • Cy3 CCUG17874 (A2)-23855 with Cy5 CCUG17874 (B2)-23817 → Hyb:35218
  • Cy3 CCUG17874 (A1)-23769 with Cy5 CCUG17874 (A1)-23814 → Hyb:32517
  • Cy3 CCUG17874 (A6) with Cy5 hp0958 KO (C1) → Hyb:32522
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