Isaiah M. Castaneda Week 12

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
(hybridizations)
Current revision (12:31, 30 November 2011) (view source)
(link to master spreadsheet file)
 
(3 intermediate revisions not shown.)
Line 4: Line 4:
[[BIOL368/F11:Week_12]]
[[BIOL368/F11:Week_12]]
 +
 +
=== Master Spreadsheet for Week 13 Lab ===
 +
 +
[[Media:H_pylori_Master_20111130_KD.xls | H_pylori_Master_20111130_KD.xls]]
===Link to all files from Douillard paper===
===Link to all files from Douillard paper===
Line 54: Line 58:
===Cy5===
===Cy5===
*hp0906KO total RNA (C1)
*hp0906KO total RNA (C1)
 +
:[[Media:MBAD_32063.txt|MBAD_32063.txt]]
*CCUG17874 total RNA (C1)
*CCUG17874 total RNA (C1)
 +
:[[Media:MBAD_32085.txt|MBAD_32085.txt]]
*hp0906KO total RNA (B1)
*hp0906KO total RNA (B1)
 +
:[[Media:MBAD_32065.txt|MBAD_32065.txt]]
*hp0906KO total RNA (A1)
*hp0906KO total RNA (A1)
 +
:[[Media:MBAD_32067.txt|MBAD_32067.txt]]
*hp0958 KO total RNA (B1)
*hp0958 KO total RNA (B1)
 +
:[[Media:MBAD_32059.txt|MBAD_32059.txt]]
*hp0958 KO total RNA (A1)
*hp0958 KO total RNA (A1)
 +
:[[Media:MBAD_32057.txt|MBAD_32057.txt]]
*CCUG17874 total RNA (B1)
*CCUG17874 total RNA (B1)
 +
:[[Media:MBAD_32075.txt|MBAD_32075.txt]]
*CCUG17874 total RNA (A1)
*CCUG17874 total RNA (A1)
 +
:[[Media:MBAD_32081.txt|MBAD_32081.txt]]
*hp0958 KO total RNA (C1)
*hp0958 KO total RNA (C1)
 +
:[[Media:MBAD_32055.txt|MBAD_32055.txt]]
*CCUG17874 gDNA (B1)
*CCUG17874 gDNA (B1)
 +
:[[Media:MBAD_32069.txt|MBAD_32069.txt]]
*CCUG17874 gDNA (A1)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23772
*CCUG17874 gDNA (A1)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23772
 +
:[[Media:MBAD_32081.txt|MBAD_32081.txt]]
===Cy3===
===Cy3===
*CCUG17874 gDNA (A3)
*CCUG17874 gDNA (A3)
 +
:[[Media:MBAD_32062.txt|MBAD_32062.txt]]
*CCUG17874 gDNA (A3)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768
*CCUG17874 gDNA (A3)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768
 +
:[[Media:MBAD_32084.txt|MBAD_32084.txt]]
*CCUG17874 gDNA (A2)
*CCUG17874 gDNA (A2)
 +
:[[Media:MBAD_32064.txt|MBAD_32064.txt]]
*CCUG17874 gDNA (A1)
*CCUG17874 gDNA (A1)
 +
:[[Media:MBAD_32067.txt|MBAD_32067.txt]]
*NCTC26695 gDNA (B1)
*NCTC26695 gDNA (B1)
 +
:[[Media:MBAD_32074.txt|MBAD_32074.txt]]
*CCUG17874 gDNA (A5)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768
*CCUG17874 gDNA (A5)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768
 +
:[[Media:MBAD_32058.txt|MBAD_32058.txt]]
*NCTC26695 gDNA (A1)
*NCTC26695 gDNA (A1)
 +
:[[Media:MBAD_32070.txt|MBAD_32070.txt]]
*CCUG17874 gDNA (A4)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768
*CCUG17874 gDNA (A4)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768
 +
:[[Media:MBAD_32056.txt|MBAD_32056.txt]]
*CCUG17874 gDNA (A2)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768
*CCUG17874 gDNA (A2)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768
 +
:[[Media:MBAD_32068.txt|MBAD_32068.txt]]
*CCUG17874 gDNA (A1)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768
*CCUG17874 gDNA (A1)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768
 +
:[[Media:MBAD_32080.txt|MBAD_32080.txt]]
*CCUG17874 gDNA (A6)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768
*CCUG17874 gDNA (A6)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768
 +
:[[Media:MBAD_32054.txt|MBAD_32054.txt]]
===Hybridizations===
===Hybridizations===
-
*Cy5 hp0906KO (C1) with Cy3 CCUG17874 (A3)             →  Hyb:32525
+
*Cy5 hp0906KO (C1) with Cy3 CCUG17874 (A3)               →  Hyb:32525
-
*Cy3 CCUG17874 (A3)-23856 with Cy5 CCUG17874 (C1)       →  Hyb:32519
+
*Cy3 CCUG17874 (A3)-23856 with Cy5 CCUG17874 (C1)       →  Hyb:32519
-
*Cy5 hp0906KO (B1) with Cy3 CCUG17874 (A2)             →  Hyb:32524
+
*Cy5 hp0906KO (B1) with Cy3 CCUG17874 (A2)               →  Hyb:32524
-
*Cy3 CCUG17874 (A1) with Cy5 hp0906KO (A1)             →  Hyb:32523
+
*Cy3 CCUG17874 (A1) with Cy5 hp0906KO (A1)               →  Hyb:32523
-
*Cy5 CCUG17874 (B1)with Cy3 NCTC26695 (B1)              →  Hyb:32528
+
*Cy5 CCUG17874 (B1) with Cy3 NCTC26695 (B1)              →  Hyb:32528
-
*Cy3 CCUG17874 (A5)with Cy5 hp0958 KO (B1)              →  Hyb:32521
+
*Cy3 CCUG17874 (A5) with Cy5 hp0958 KO (B1)              →  Hyb:32521
-
*Cy3 NCTC26695 (A1)with Cy5 CCUG17874 (A1)              →  Hyb:32526
+
*Cy3 NCTC26695 (A1) with Cy5 CCUG17874 (A1)              →  Hyb:32526
-
*Cy5 hp0958 KO (A1)with Cy3 CCUG17874 (A4)              →  Hyb:32520
+
*Cy5 hp0958 KO (A1) with Cy3 CCUG17874 (A4)              →  Hyb:32520
-
*Cy3 CCUG17874 (A2)-23855 with Cy5 CCUG17874 (B2)-23817 →  Hyb:35218
+
*Cy3 CCUG17874 (A2)-23855 with Cy5 CCUG17874 (B2)-23817 →  Hyb:35218
-
*Cy3 CCUG17874 (A1)-23769 with Cy5 CCUG17874 (A1)-23814 →  Hyb:32517
+
*Cy3 CCUG17874 (A1)-23769 with Cy5 CCUG17874 (A1)-23814 →  Hyb:32517
-
*Cy3 CCUG17874 (A6) with Cy5 hp0958 KO (C1)             →  Hyb:32522
+
*Cy3 CCUG17874 (A6) with Cy5 hp0958 KO (C1)             →  Hyb:32522

Current revision

user:Isaiah M. Castaneda

Template: Isaiah M. Castaneda]

BIOL368/F11:Week_12

Contents

Master Spreadsheet for Week 13 Lab

H_pylori_Master_20111130_KD.xls

Link to all files from Douillard paper

http://www.ebi.ac.uk/arrayexpress/files/E-BUGS-78

Readme's

Processed

Raw

.sdrf.txt file

Array Files

Cy5

  • hp0906KO total RNA (C1)
MBAD_32063.txt
  • CCUG17874 total RNA (C1)
MBAD_32085.txt
  • hp0906KO total RNA (B1)
MBAD_32065.txt
  • hp0906KO total RNA (A1)
MBAD_32067.txt
  • hp0958 KO total RNA (B1)
MBAD_32059.txt
  • hp0958 KO total RNA (A1)
MBAD_32057.txt
  • CCUG17874 total RNA (B1)
MBAD_32075.txt
  • CCUG17874 total RNA (A1)
MBAD_32081.txt
  • hp0958 KO total RNA (C1)
MBAD_32055.txt
  • CCUG17874 gDNA (B1)
MBAD_32069.txt
  • CCUG17874 gDNA (A1)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23772
MBAD_32081.txt

Cy3

  • CCUG17874 gDNA (A3)
MBAD_32062.txt
  • CCUG17874 gDNA (A3)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768
MBAD_32084.txt
  • CCUG17874 gDNA (A2)
MBAD_32064.txt
  • CCUG17874 gDNA (A1)
MBAD_32067.txt
  • NCTC26695 gDNA (B1)
MBAD_32074.txt
  • CCUG17874 gDNA (A5)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768
MBAD_32058.txt
  • NCTC26695 gDNA (A1)
MBAD_32070.txt
  • CCUG17874 gDNA (A4)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768
MBAD_32056.txt
  • CCUG17874 gDNA (A2)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768
MBAD_32068.txt
  • CCUG17874 gDNA (A1)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768
MBAD_32080.txt
  • CCUG17874 gDNA (A6)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768
MBAD_32054.txt

Hybridizations

  • Cy5 hp0906KO (C1) with Cy3 CCUG17874 (A3) → Hyb:32525
  • Cy3 CCUG17874 (A3)-23856 with Cy5 CCUG17874 (C1) → Hyb:32519
  • Cy5 hp0906KO (B1) with Cy3 CCUG17874 (A2) → Hyb:32524
  • Cy3 CCUG17874 (A1) with Cy5 hp0906KO (A1) → Hyb:32523
  • Cy5 CCUG17874 (B1) with Cy3 NCTC26695 (B1) → Hyb:32528
  • Cy3 CCUG17874 (A5) with Cy5 hp0958 KO (B1) → Hyb:32521
  • Cy3 NCTC26695 (A1) with Cy5 CCUG17874 (A1) → Hyb:32526
  • Cy5 hp0958 KO (A1) with Cy3 CCUG17874 (A4) → Hyb:32520
  • Cy3 CCUG17874 (A2)-23855 with Cy5 CCUG17874 (B2)-23817 → Hyb:35218
  • Cy3 CCUG17874 (A1)-23769 with Cy5 CCUG17874 (A1)-23814 → Hyb:32517
  • Cy3 CCUG17874 (A6) with Cy5 hp0958 KO (C1) → Hyb:32522
Personal tools