Isaiah M. Castaneda Week 12

user:Isaiah M. Castaneda

Template: Isaiah M. Castaneda]

BIOL368/F11:Week_12

Master Spreadsheet for Week 13 Lab

H_pylori_Master_20111130_KD.xls

Link to all files from Douillard paper

http://www.ebi.ac.uk/arrayexpress/files/E-BUGS-78

Readme's

• Experiment E-BUGS-78

Processed

• Media:DBAD_32788.txt
• Media:DBAD_32789.txt
• Media:DBAD_32795.txt
• Media:E-BUGS-78-processed-data-1757476218.txt
• Media:E-BUGS-78-processed-data-1757476240.txt
• Media:E-BUGS-78-processed-data-1757476352.txt

Raw

• Media:MBAD_32054.txt
• Media:MBAD_32055.txt
• Media:MBAD_32056.txt
• Media:MBAD_32057.txt
• Media:MBAD_32058.txt
• Media:MBAD_32059.txt
• Media:MBAD_32062.txt
• Media:MBAD_32063.txt
• Media:MBAD_32064.txt
• Media:MBAD_32065.txt
• Media:MBAD_32066.txt
• Media:MBAD_32067.txt
• Media:MBAD_32068.txt
• Media:MBAD_32069.txt
• Media:MBAD_32070.txt
• Media:MBAD_32071.txt
• Media:MBAD_32074.txt
• Media:MBAD_32075.txt
• Media:MBAD_32080.txt
• Media:MBAD_32081.txt
• Media:MBAD_32084.txt
• Media:MBAD_32085.txt

.sdrf.txt file

• Media:E-BUGS-78.sdrf.txt

Array Files

• Array A-BUGS-18
• Media:A-BUGS-18.adf.xls

Cy5

• hp0906KO total RNA (C1)

MBAD_32063.txt

• CCUG17874 total RNA (C1)

MBAD_32085.txt

• hp0906KO total RNA (B1)

MBAD_32065.txt

• hp0906KO total RNA (A1)

MBAD_32067.txt

• hp0958 KO total RNA (B1)

MBAD_32059.txt

• hp0958 KO total RNA (A1)

MBAD_32057.txt

• CCUG17874 total RNA (B1)

MBAD_32075.txt

• CCUG17874 total RNA (A1)

MBAD_32081.txt

• hp0958 KO total RNA (C1)

MBAD_32055.txt

• CCUG17874 gDNA (B1)

MBAD_32069.txt

• CCUG17874 gDNA (A1)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23772

MBAD_32081.txt

Cy3

• CCUG17874 gDNA (A3)

MBAD_32062.txt

• CCUG17874 gDNA (A3)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768

MBAD_32084.txt

• CCUG17874 gDNA (A2)

MBAD_32064.txt

• CCUG17874 gDNA (A1)

MBAD_32067.txt

• NCTC26695 gDNA (B1)

MBAD_32074.txt

• CCUG17874 gDNA (A5)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768

MBAD_32058.txt

• NCTC26695 gDNA (A1)

MBAD_32070.txt

• CCUG17874 gDNA (A4)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768

MBAD_32056.txt

• CCUG17874 gDNA (A2)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768

MBAD_32068.txt

• CCUG17874 gDNA (A1)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768

MBAD_32080.txt

• CCUG17874 gDNA (A6)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768

MBAD_32054.txt

Hybridizations

• Cy5 hp0906KO (C1) with Cy3 CCUG17874 (A3) → Hyb:32525
• Cy3 CCUG17874 (A3)-23856 with Cy5 CCUG17874 (C1) → Hyb:32519
• Cy5 hp0906KO (B1) with Cy3 CCUG17874 (A2) → Hyb:32524
• Cy3 CCUG17874 (A1) with Cy5 hp0906KO (A1) → Hyb:32523
• Cy5 CCUG17874 (B1) with Cy3 NCTC26695 (B1) → Hyb:32528
• Cy3 CCUG17874 (A5) with Cy5 hp0958 KO (B1) → Hyb:32521
• Cy3 NCTC26695 (A1) with Cy5 CCUG17874 (A1) → Hyb:32526
• Cy5 hp0958 KO (A1) with Cy3 CCUG17874 (A4) → Hyb:32520
• Cy3 CCUG17874 (A2)-23855 with Cy5 CCUG17874 (B2)-23817 → Hyb:35218
• Cy3 CCUG17874 (A1)-23769 with Cy5 CCUG17874 (A1)-23814 → Hyb:32517
• Cy3 CCUG17874 (A6) with Cy5 hp0958 KO (C1) → Hyb:32522