Jeff Tabor/UCSF Synthetic Biology Team Challenge: Difference between revisions
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*Contact | *Contact | ||
Jeff Tabor: jeff DOT tabor AT gmail DOT com | Jeff Tabor: jeff DOT tabor AT gmail DOT com | ||
Howard Salis: salis AT | Howard Salis: howard DOT salis AT gmail DOT com | ||
===Schedule=== | ===Schedule=== | ||
Revision as of 20:41, 12 March 2007
General Information
*Dates: March 19 - March 23, 2007. *Final presentations: March 26, 11-1230AM GH114
*Location: M-W, F: 9AM-12PM BH 211 TH: 9AM-12PM BH 212 M-F: 9AM-5PM N114
*Breakfast/coffee @845AM every day. *Lunch @~12:30 in N114 every day.
*Contact Jeff Tabor: jeff DOT tabor AT gmail DOT com Howard Salis: howard DOT salis AT gmail DOT com
Schedule
Final Presentation/Rubric
System blueprint annotated at multiple levels of abstraction down to exact DNA sequence. Systems have to be very well annotated; promoters, -35, -10, operators, RBS, start codon, stop codon, terminator. Report must describe why each part was selected as opposed to other available parts.
References
- Elowitz and Leibler, 2000
- Gardner et al., 2000
- Basu et al., Pulse generator
- Basu et al., 2005
- Levskaya et al., 2005
- Ultrasensitivity in transcriptional cascades Weiss
- Kobayashi et al., 2004
- Guido et al., 2005
- Guet et al., 2002
- Anderson et al., 2005
- Yokobayashi et al., 2002
- Bayer and Smolke, 2005
- Yokobayashi allosteric shRNA?
Links
MIT's registry of biological parts
Notes/Powerpoint
- Day 1
- Day 2
- Day 3
- Day 4
- Day 5
