Jin:Publications: Difference between revisions

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[[Image:Jin word.jpg|500px|right|Kew words]]


==Peer-reviewed articles==
==Peer-reviewed articles==
<biblio>
 
# Kim10 pmid=20933550
===2016===
# Jung10 pmid=20675450
*Oh, E., Skerker, J.M., Kim, S.R., Wei, N., Turner, T.L., Maurer, M., Arkin, A.P., Jin, Y.S. Gene amplification on demand accelerates cellobiose utilization in engineered ''Saccharomyces cerevisiae''. '''Applied and Environmental Microbiology''' (in press)
# Hong10 pmid=20600383
*Xia, P., Zhang, G.C., Liu, J., Kwak, S., Tsai, C.S., Kong, I.I., Sung, B.H., Sohn, J.H., Wang, S.G., Jin, Y.S. GroE chaperonins assisted functional expression of bacterial enzymes in ''Saccharomyces cerevisiae''. '''Biotechnology and Bioengineering''' (in press)
# Shin09 pmid=19646960
*Liu, J., Kong, I.I., Zhang, G., Jayakody, L., Kim, H., Xia, P.F., Kwak, S., Sung, B.H., Sohn, J.H., Walukiewicz, H., Rao, C., Jin, Y.S. Metabolic engineering of a probiotic ''Saccharomyces boulardii''. '''Applied and Environmental Microbiology''' (in press)
# Tyo09 pmid=19606467
*Lia, X., Parka, A., Estrelaa, R., Kim, S.R., Jin, Y.S., Cate, J.H.D. Comparison of xylose fermentation by two high-performance engineered strains of ''Saccharomyces cerevisiae''. '''Biotechnology Reports''' (in press)
# Lee_J09 pmid=19494696
*Kim, J.S., Cho, D.H., Heo, P., Jung, S.C., Park, M., Oh, E.J., Sung, J., Kim, P.J., Lee, S., Lee, D., Lee, S., Lee, C.H., Shin, D., Jin, Y.S., Kweon, D.H. Fumarate-mediated persistence of ''Escherichia coli'' against antibiotics. '''Antimicrobial Agents and Chemotherapy''' (in press)
# Lee_K09 Lee K, Shin JY, Jang YS, Shin JI, Park YC, Seo JH, Park TH, Shin CS, Jin YS, and Kweon DH ''Towards a microarray of functional membrane proteins: Assembly of a surface-attachable, membrane-protein-anchored membrane structure using apolipoprotein A-1''. Enzyme and Microbial Technology 2009 44:217-222
 
# Jung08 pmid=18459979
===2015===
# Lee08 Lee KS, Chang EH, Shin JY, Kweon DH, Park KM, and Jin YS '' Production of casein phosphopeptides using Streptococcus faecalis var. liquefaciens cell immobilization''. Korean J. Biotechnol. Bioeng. 2008 23:59-64
*Xu, H., Kim, S., Sorek, H., Lee, Y., Jeong, D., Kim, J.Y., Oh, E.J., Yun, E.J., Wemmer, D.E., Kim, K.H., Jin, Y.S., Kim, S.R. (2015), ''PHO13'' Deletion-Induced Transcriptional Activation Prevents Sedoheptulose Accumulation during Xylose Metabolism in Engineered ''Saccharomyces cerevisiae''. '''Metabolic Engineering''' (Accepted)
# Jung07 Jung SC, Kim JS, Jung CY, Kweon DH, Park K, and Jin YS ''Policosanol Production from Rice Bran Oil Byproducts''. Food Engineering Progress 2007 11:293~297
*Jayakody, L.N., Lane, S., Kim, H., Jin, Y.S. (2015), Mitigating health risks associated with alcoholic beverages through metabolic engineering. '''Current Opinions in Biotechnology''' (In press)
# Jin07a pmid=17509919
*Park, Y.C., Oh, E.J., Jo, J.H., Jin, Y.S., Seo, J.H. (2015) Recent advances in biological production of sugar alcohols. '''Current Opinions in Biotechnology''' (In press)
# Jin07 pmid=17334359
*Zhang, G.C., Liu, J.J., Kong, I.I., Kwak, S., Jin, Y.S. (2015), Combining C6 and C5 sugar metabolism for enhancing microbial bioconversion. '''Current Opinions in Chemical Biology''' (In press)
# Jin05 pmid=16332810
*Turner, T.L., Zhang, G.-C., Oh, E.J., Subramaniam, V., Adiputra, A., Subramaniam, V., Skory, C.D., Jang, J.Y., Yu, B.J., Park, I. and Jin, Y.-S. (2015), Lactic acid production from cellobiose and xylose by engineered Saccharomyces cerevisiae. '''Biotechnololgy and Bioengineering''' [http://onlinelibrary.wiley.com/doi/10.1002/bit.25875/abstract Link] (In press)
# Jin05a pmid=15635458
*Yun, E.J., Kwak, S., Kim, S.R., Park, Y.C., Jin, Y.S., Kim, K. H. Production of (S)-3-hydroxyburate by metabolically engineered ''Saccharomyces cerevisiae''. '''Journal of Biotechnology''' 209 (2015): 23-30. [http://www.sciencedirect.com/science/article/pii/S016816561530002X Link]
# Jin05b pmid=15885614
*Liao, C., Seo, S.O., Celik, V., Liu, H., Kong, W., Wang, Y., Blaschek, H., Jin, Y.S., Lu, T. Integrated, systems metabolic picture of the acetone-butanol-ethanol fermentation by ''Clostridium acetobutylicum''. '''Proceedings of the National Academy of Sciences''' 112.27 (2015): 8505-8510.  [http://www.pnas.org/content/112/27/8505.short Link]
# Jin05c pmid=15635458
*Turner, T.L., Zhang, G.C., Kim, S.R., Subramaniam, V., Steffen, D., Skory, C.D., Jang, J.Y., Yu, B.J., Jin, Y.S. Lactic acid production from xylose by engineered ''Saccharomyces cerevisiae'' without PDC or ADH deletion. '''Applied Microbiology and Biotechnology'''  99.19 (2015): 8023-8033. [http://link.springer.com/article/10.1007/s00253-015-6701-3#page-1 Link]
# Jin04 pmid=15528549
*Tsai, C.S., Kong, I.I., Lesmana, A., Million, G., Zhang, G.C., Kim, S.R., Jin, Y.S. Rapid and marker-free Cas9/CRISPR refactoring yields equivalent xylose-utilization performance in yeast. '''Biotechnology and Bioengineering''' 112 (2015): 2406–2411. doi:10.1002/bit.25632 [http://www.ncbi.nlm.nih.gov/pubmed/25943337 Link]
# Jin04a pmid=15256213
*Kim, S., Sung, J., Foo, M., Jin, Y.S., Kim, P.J. Uncovering the nutritional landscape of food. '''Plos One''' 10(4), e0118697 [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4359127/ Link]
# Jin04b pmid=14595523
*Kim, J.W., Seo, S.O., Zhang, G.C., Jin, Y.S., Seo, J.H. Expression of Lactococcus lactis NADH oxidase increases 2,3-butanediol production in Pdc-deficient ''Saccharomyces cerevisiae''. '''Bioresource Technology''' 191 (2015): 512-519. [http://www.ncbi.nlm.nih.gov/pubmed/25769689 Link]
# Jin03 pmid=12721451
*Kim, S.K., Jin, Y.S., Cho,I.G., Park, Y.C., Seo, J.H. Enhanced tolerance of ''Saccharomyces cerevisiae'' to multiple lignocellulose-derived inhibitors through modulation of spermidine contents. '''Metabolic Engineering''' 29 (2015): 46-55. [http://www.sciencedirect.com/science/article/pii/S1096717615000154 Link]
# Jin03a pmid=12514033
*Kim, S.M., Guo, J., Kwak, S., Jn, Y.S., Lee, D.K., Singh, V. Effects of genetic variation and growing condition of Prairie Cordgrass on feedstock composition and ethanol yield. '''Bioresource Technology''' 183 (2015): 70-77. [http://www.sciencedirect.com/science/article/pii/S0960852415001893 Link]
# Jin02 pmid=11872473
*Li, X., Vivian, Y.Y., Lin, Y., Chomvong, K., Estrela, R., Liang, J.M., Znameroski, E.A., Feehan, J., Kim, S.R., Jin, Y.S., Glass, N.L., Cate, J.H.D. Expanding xylose metabolism in yeast for plant cell wall conversion to biofuels. '''eLife''' 2015 Feb 3;4. doi: 10.7554/eLife.05896.[http://elifesciences.org/content/early/2015/02/03/eLife.05896 Link]
# Jin00b pmid=12876799
*Lewis, Z.T., Totten, S.M., Smilowitz, J.T., Popovic, M., Parker, E., Lemay, D.G., Van Tassell, M.L., Miller, M.J., Jin, Y.S., German, J.B., Lebrilla, C.B., Mills, D.A. Maternal Fucosyltransferase 2 Status Affects the Gut Bifidobacterial Communities of Breastfed Infants. '''Microbiome''' 10;3:13. doi: 10.1186/s40168-015-0071-z. eCollection 2015 [http://www.ncbi.nlm.nih.gov/pubmed/25922665 Link]
# Jin00a Jin YS, Lee TH, Choi YD, Ryu YW, and Seo JH ''Conversion of xylose to ethanol by recombinant Saccharomyces cerevisiae containing genes coding for xylose reductase and xylitol dehydrogenase from Pichia stiptis'' J. Microbiol. Biotechnol. 2000 10:564-567
*Yi, W., Zhang, X., Seo, S., Choi, K., Ting, L., Jin, Y.S., Hans, B. Markerless chromosomal gene deletion in Clostridium beijerinckii using CRISPR/Cas9 system. '''Journal of Biotechnology''' 200 (2015): 1-5. [http://www.sciencedirect.com/science/article/pii/S0168165615000486 Link]
*Wei, N., Oh, E.J., Million, G., Cate, J., Jin, Y.S. Simultaneous utilization of cellobiose, xylose, and acetic acid from lignocellulosic biomass for biofuel production by an engineered yeast platform. '''ACS Synthetic Biology''' 4(6), 707-713. [http://www.ncbi.nlm.nih.gov/pubmed/25587748 Link]
</biblio>
 
===2014===
 
*Kim, S.R., Xu, H., Lesmana, A., Kuzmanovic, U., Au, M., Florencia, C., Oh, E.J., Zhang, G., Kim, H.K., and Jin, Y.S. Deletion of PHO13 encoding HAD type IIA phosphatase results in upregulation of the pentose phosphate pathway in yeast. '''Applied and Environmental Microbiology''' 81(5):1601-9. doi: 10.1128/AEM.03474-14. [http://www.ncbi.nlm.nih.gov/pubmed/25527558 Link]
*Quarterman, J., Kim, S.R., Kim, P.J., Jin, Y.S. Enhanced hexose fermentation by ''Saccharomyces cerevisiae'' through integration of stoichiometric modeling and genetic screening. '''Journal of Biotechnology''' [http://www.sciencedirect.com/science/article/pii/S0168165614010141 Link]
*Kim, T. Y., Oh, E. J., Jin, Y. S., Oh, M. K. Improved resistance against oxidative stress of engineered cellobiose-fermenting ''Saccharomyces cerevisiae'' revealed by metabolite profiling. '''Biotechnology and Bioprocess Engineering''', 19(6), 951-957. [http://link.springer.com/article/10.1007/s12257-014-0301-4#page-1 Link]
*Lane, S., Zhang, S., Wei, N., Rao, C., Jin, Y.S. Development and Physiological Characterization of Cellobiose-Consuming ''Yarrowia lipolytica''. '''Biotechnology & Bioengineering''' 112(5):1012-22. doi: 10.1002/bit.25499. [http://onlinelibrary.wiley.com/doi/10.1002/bit.25499/full Link]
*Zhang, G., Kong, I.I., Kim, H., Liu, J., Cate, J.H.D., Jin, Y.S. Construction of a quadruple auxotrophic mutant of an industrial polyploidy ''Saccharomyces cerevisiae'' using RNA-guided Cas9 nuclease. '''Applied and Environmental Microbiology''' [http://aem.asm.org/content/early/2014/09/29/AEM.02310-14.abstract Link]
*Tsai, C.S., Kwak, S., Turner, T.L., Jin, Y.S. Yeast synthetic biology toolbox and applications for biofuel production. '''FEMS Yeast Research''' doi: 10.1111/1567-1364.12206. [http://onlinelibrary.wiley.com/doi/10.1111/1567-1364.12206/abstract Link]
*Lin, Y., Chomvong, L., Acosta-Sampson, L., Estrela, R., Galazka, J.M., Kim, S.R., Jin, Y.S., Cate, J.H.D. Leveraging transcription factors to speed cellobiose fermentation by ''Saccharomyces cerevisiae''. '''Biotechnology for Biofuels''' [http://www.biomedcentral.com/content/pdf/s13068-014-0126-6.pdf Link]
*Chomvong, K., Kordic, V., Li, X., Bauer, S., Gillespie. A.E., Ha, S.J., Oh, E.J., Galazka, J.M., Jin, Y.S., Cate, J.H. Overcoming inefficient cellobiose fermentation by cellobiose phosphorylase in the presence of xylose. '''Biotechnology for Biofuels''' [http://www.biotechnologyforbiofuels.com/content/7/1/85/abstract Link]
*Hong, N., Seo, S.S., Oh, E.J., Seo, J.H., Cate, J.H., Jin, Y.S. 2,3-Butanediol production from cellobiose by engineered ''Saccharomyces cerevisiae''. '''Applied Microbiology and Biotechnology''' [http://link.springer.com/article/10.1007/s00253-014-5683-x Link]
*Kim, S.J., Seo, S.O., Park, Y.C., Jin, Y.S., Seo, J.H. Production of 2,3-Butanediol from xylose by engineered ''Saccharomyces cerevisiae''. '''Journal of Biotechnology''' [http://www.sciencedirect.com/science/article/pii/S0168165614000352 Link]
 
===2013===
*Bae, Y.H., Kang, K.H., Jin, Y.S., Seo, J.H. Molecular cloning and expression of fungal cellobiose transporters and  β-glucosidases conferring efficient cellobiose fermentation in ''Saccharomyces cerevisiae''. '''Journal of Biotechnology''', 169, 34-41 [http://www.sciencedirect.com/science/article/pii/S0168165613004768 Link]
 
*Kim, H., Lee, W.H., Galazka, J.M., Cate, J.H., Jin, Y.S. Analysis of cellodextrin transporters from ''Neurospora crassa'' in ''Saccharomyces cerevisiae'' for cellobiose fermentation. '''Applied Microbiology and Biotechnology''', 1-8 [http://link.springer.com/article/10.1007/s00253-013-5339-2 Link]
 
*Ha, S.J., Kim, S.R., Kim, H., Du, J., Cate, J.H., Jin, Y.S. Continuous co-fermentation of cellobiose and xylose by engineered ''Saccharomyces cerevisiae''. '''Bioresource Technology''', 149, 525-531 [http://dx.doi.org/10.1016/j.biortech.2013.09.082 Link]
 
*Wei, N., Quarterman, J., Kim, S.R., Cate, J.H., Jin, Y.S. Enhanced biofuel production through coupled acetic acid and xylose consumption by engineered yeast. '''Nature Communications''' 4, 2580. [http://www.nature.com/ncomms/2013/131008/ncomms3580/full/ncomms3580.html Link], [http://www.natureasia.com/en/research/highlight/8801 News Release from Natureasia], [http://news.illinois.edu/news/13/1008biofuels_Yong-SuJin.html Inside Illinois], [http://www.bbc.co.uk/news/science-environment-24489800 BBC News]
 
*Li, S., Ha, S.J., Kim, H.J., Galazka, J.M., Cate, J.H., Jin, Y.S., Zhao, H. Investigation of the functional role of aldose 1-epimerase in engineered cellobiose utilization. '''Journal of Biotechnology''' 168, 1-6. [http://dx.doi.org/10.1016/j.jbiotec.2013.08.003 Link]
 
*Kim, H.J., Lee, H.R., Kim, C.S., Jin, Y.S., Seo, J.H. Investigation of protein expression profiles of erythritol-producing ''Candida magnoliae'' in response to glucose perturbation. '''Enzyme and Microbial Technology''' 53, 174-180 [http://dx.doi.org/10.1016/j.enzmictec.2013.03.016 Link]
 
*Kim, H.J., Turner, T.L., Jin, Y.S. Combinatorial genetic perturbation to refince metabolic circuits for producing biofuels and biochemicals. '''Biotechnology Advances''' 31, 976-985 [http://dx.doi.org/10.1016/j.biotechadv.2013.03.010 Link]
 
*Kim, S.J., Seo, S.O., Jin, Y.S., Seo, J.H. Production of 2,3-butanediol by engineered ''Saccharomyces cerevisiae''. '''Bioresource Technology''' 146, 274-281 [http://dx.doi.org/10.1016/j.biortech.2013.07.081 Link]
 
*Wang, Y., Li, X.Z., Milne, C., Janssen, H., Lin, W., Phan, G., Hu, H., Jin, Y.S., Price, N., Blaschek, H. Development of a gene knockout system using mobile group II introns (Targetron) and genetic disruption of acid production pathways in ''Clostridium beijerinckii''. '''Applied and Environmental Microbiology''' 79, 5853-5863 [http://aem.asm.org/content/early/2013/07/15/AEM.00971-13.short Link] 
 
*Lee, W.H., Nan, H., Kim, H.J., Jin, Y.S. Simultaneous saccharification and fermentation by engineered ''Saccharomyces cerevisiae'' without supplementing extracellular beta-glucosidase. '''Journal of Biotechnology''' 167, 316-322  [http://www.sciencedirect.com/science/article/pii/S0168165613002721 Link]
 
*Kim, S.R., Park, Y.C., Jin, Y.S., Seo, J.H. Strain engineering of ''Saccharomyces cerevisiae'' for enhanced xylose metabolism. '''Biotechnology Advances''' 31, 851-861 [http://dx.doi.org/10.1016/j.biotechadv.2013.03.004 Link]
 
*Wei, N., Xu, H., Kim, S.R., & Jin, Y.S. Deletion of ''FPS1'' coding for aquaglyceroporin Fps1p improves xylose fermentation by engineered ''Saccharomyces cerevisiae''. '''Applied and Environmental Microbiology''' [http://aem.asm.org/content/79/10/3193.short Link]
 
*Kim, S.R., Kwee, N.R., Kim, H.J. & Jin, Y.S. Feasibility of xylose fermentation by engineered ''Saccharomyces cerevisiae'' overexpressing endogenous aldose reductase (''GRE3''), xylitol dehydrogenase (''XYL2'') and xylulokinase (''XYL3'') from ''Scheffersomyces stipitis''. '''FEMS Yeast Research''' [http://onlinelibrary.wiley.com/doi/10.1111/1567-1364.12036/abstract Link]
 
*Lee, W.H., Kim, M.D., Jin, Y.S. & Seo, J.H. Engineering of NADPH regenerators in ''Escherichia coli'' for enhanced biotransformation. '''Applied Microbiology and Biotechnology''' [http://link.springer.com/article/10.1007/s00253-013-4750-z Link]
 
*Kim, S.R., Skerker, J.M., Kang, W., Lesmana, A., Wei, N., Arkin, A.P. & Jin, Y.S. Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in ''Saccharomyces cerevisiae''. '''PLOS One''' [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0057048?utm_source=feedburner&utm_medium=feed&utm_campaign=Feed%3A+plosone%2FPLoSONE+(PLoS+ONE+Alerts%3A+New+Articles) Link]
 
*Kim, S.R., Lee, K.S., Kong, I.K., Lesmana, A., Lee, W.H., Seo, J.H., Kweon, D.H. & Jin, Y.S. Construction of an efficient xylose-fermenting diploid ''Saccharomyces cerevisiae'' strain through mating of two engineered haploid strains capable of xylose assimilation. '''Journal of Biotechnology''' [http://www.ncbi.nlm.nih.gov/pubmed/23376240 Link]
 
===2012===
*Guo, B., Zhang, Y., Yu, G., Lee, W.H., Jin, Y.S.& Morgenroth, E., Two-stage acidic-alkaline hydrothermal pretreatment of lignocellulose for the high recovery of cellulose and hemicellulose sugars. '''Applied Biochemistry and Biotechnology''' [http://link.springer.com/article/10.1007%2Fs12010-012-0038-5 Link]
 
*Ha,S.J., Kim, H., Lin, Y., Jang, M.U., Galazka, J.M., Kim, T.J., Cate. J.H. & Jin, Y.S. Single amino acid substitutions of HXT2.4 from ''Scheffersomyces stipitis'' lead to improved cellobiose fermentation by engineered ''Saccharomyces cerevisiae''. '''Applied and Environmental Microbiology''' [http://aem.asm.org/content/79/5/1500.abstract Link]
 
*Ha, S.J., Galazka, J.M., Oh, E.J., Kordic, V., Kim, H., Jin, Y.S., & Cate, J.H. Energetic benefits and rapid cellobiose fermentation by ''Saccharomyces cerevisiae'' expressing cellobiose phosphorylase and mutant cellodextrin transporters. '''Metabolic Engineering''' [http://www.sciencedirect.com/science/article/pii/S109671761200122X Link]
 
*Wei, N. Quarterman, J., & Jin, Y.S. Marine macroalgae: an untapped resource for producing fuels and chemicals. '''Trends in Biotechnol'''. [http://www.cell.com/trends/biotechnology/abstract/S0167-7799(12)00189-8 Link]
 
*Oh, E.J., Ha, S.J., Kim, S.R., Lee, W.H., Galazka, J.M., Cate, J.H. & Jin, Y.S. Enhanced xylitol production through simultaneous co-utilization of cellobiose and xylose by engineered ''Saccharomyces cerevisiae''. '''Metabolic Engineering''' [http://www.sciencedirect.com/science/article/pii/S1096717612000985 Link]
 
*Lee, K.S., Kim, J.S., Heo, P., Yang, T.J., Sung, Y.J., Cheon, Y., Koo, H.M., Yu, B.J., Seo, J.H., Jin, Y.S., Park, J.C., Kweon, D.H. Characterization of ''Saccharomyces cerevisiae'' promoters for heterologous gene expression in ''Kluyveromyces marxianus''. '''Appl Microbiol Biotechnol''' [http://www.ncbi.nlm.nih.gov/pubmed/22911091 Link]
 
*Lee, W.H., Pathanibul, P., Quarterman, J., Jo, J.H., Han, N.S., Miller, M.J., Jin, Y.S.& Seo, J.H. Whole cell biosynthesis of a functional oligosaccharide, 2-fucosyllactose, using engineered ''Escherichia coli''. '''Microbial Cell Factories''' 11, 48 [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3442965/?report=abstract Link]
 
*Lee, W.H., Seo, S.O., Bae, Y.H., Nan, H., Jin, Y.S.& Seo, J.H. Isobutanol production in engineered ''Saccharomyces cerevisiae'' by overexpression of 2-ketoisovalerate decarboxylase and valine biosynthetic enzymes. '''Bioprocess and Biosystems Engineering''' 35, 1467-75 [http://www.ncbi.nlm.nih.gov/pubmed/22543927 Link]
 
*Kim, S.R., Ha, S.J., Kong, I.I., & Jin, Y.S. High expression of ''XYL2'' coding for xylitol dehydrogenase is necessary for efficient xylose fermentation by engineered ''Saccharomyces cerevisiae'' '''Metab. Eng'''. 14, 336-343 [http://www.ncbi.nlm.nih.gov/pubmed/22521925 Link]
 
*Guo, B., Zhang, Y., Ha, S. J., Jin, Y.S.& Morgenroth, E. Combined biomimetic and inorganic acids hydrolysis of hemicellulose in Miscanthus for bioethanol production. '''Bioresource Technol''' 110,278-87 [http://dx.doi.org/10.1016/j.biortech.2012.01.133 Link]
 
*Kim, S.R., Ha, S.J., Wei, N., Oh, E.J., & Jin, Y.S. Simultaneous co-fermenation of mixed sugars: a promising strategy for producing cellulosic ethnaol. '''Trend Biotechnol''' 30,274–282 [http://dx.doi.org/10.1016/j.tibtech.2012.01.005 Link]
 
*Jin, Y.S. & Cate, J.H. Model-guided strain improvement: Simultaneous hydrolysis and co-fermentation of cellulosic sugars. '''Biotechnol. J'''. 7,361-73. [http://onlinelibrary.wiley.com/doi/10.1002/biot.201100489/full Link]
 
*Cha, C., Kim, S.R., Jin, Y.S. & Kong, H.J. Tuning structural durability of yeast-encapsulating alginate gel beads with interpenetrating networks for sustained bioethanol production. '''Biotechnol. Bioeng'''. 109,63-73 [http://onlinelibrary.wiley.com/doi/10.1002/bit.23258/abstract Link]
 
===2011===
 
*Lu, C.H., Choi, J.H., Engelmann Moran, N., Jin, Y.S. & Erdman, J. Laboratory-scale production of 13C-labeled lycopene and phytoene by bioengineered ''Escherichia''. '''J Agric Food Chem'''  [http://pubs.acs.org/doi/abs/10.1021/jf202599z Link]
 
*Kim, J.S., Heo P., Yang. T.J., Lee, K.S., Jin Y.S., Kim, S. K., Shin, D. & Kweon, D.H. Bacterial persisters tolerate antibiotics by not producing hydroxyl radicals. '''Biochem. Biophys. Res. Commun.''' [http://www.ncbi.nlm.nih.gov/pubmed/21872573 Link]
 
*Milne, C.B., Eddy, J.A., Raju, R., Ardekani,S., Kim, P.J., Senger, R. S., Jin, Y.S., Blaschek, H.P. & Price, N.D. Metabolic network reconstruction and genome-scale model of butanol-producing strain ''Clostridium beijerinckii'' NCIMB 8052 '''BMC Systems Biology''' 5:130. [http://www.biomedcentral.com/1752-0509/5/130 Link]
 
*Ha, S.J., Wei, Q., Kim, S.R., Galazka, J., Cate, J.H. & Jin, Y.S. Co-fermentation of cellobiose and galactose by an engineered ''Saccharomyces cerevisiae''.''' Appl. Environ. Microbiol.''' 77, 5822-5826. [http://aem.asm.org/cgi/content/abstract/77/16/5822 Link], [http://www.dailycal.org/2011/08/30/team-doubles-efficiency-of-converting-seaweed-into-biofuel/ Related News]
 
*Ha, S.J., Kim, S.R., Choi J.H., Park, M.S. & Jin Y.S. Xylitol does not inhibit xylose fermentation by engineered ''Saccharomyces cerevisiae'' expressing ''xylA'' as severely as it inhibits xylose isomerase reaction ''in vitro''. '''Appl Microbiol Biotechnol''' [http://www.springerlink.com/content/q8724640851x5u25/ Link]
 
*Ha, S.J., Galazka J.M., Rin Kim S., Choi J.H., Yang X., Seo J.H., Louise Glass N., Cate J.H., & Jin Y.S.Engineered ''Saccharomyces cerevisiae'' capable of simultaneous cellobiose and xylose fermentation. '''Proc Natl Acad Sci U S A.''' 108, 504-509 (2011) [http://www.pnas.org/content/108/2/504.abstract Link],[http://www.pnas.org/content/108/2/435.full In This Issue-PNAS], [http://www.physorg.com/news/2010-12-scientists-major-obstacles-cellulosic-biofuel.html Related News]
 
*Lee, K.S., Hong, M.E., Jung, S.C., Ha, S.J., Yu, B.J., Koo, H.M., Park, S.M., Seo, J.H., Kweon, D.H., Park, J.C. & Jin, Y.S. Improved galactose fermentation of ''Saccharomyces cerevisiae'' through inverse metabolic engineering. '''Biotechnol Bioeng.''' 108, 621-632. [http://dx.doi.org/10.1002/bit.22988 Link]
 
===2010===
*Kim, S.R., Lee, K.S., Choi, J.H., Ha, S.J., Kweon, D.H., Seo, J.H. & Jin, Y.S. Repeated-batch fermentations of xylose and glucose-xylose mixtures using a respiration-deficient ''Saccharomyces cerevisiae'' engineered for xylose metabolism. '''J Biotechnol''' 150, 404-407 (2010). [http://dx.doi.org/10.1016/j.jbiotec.2010.09.962 Link]
* Jung, S.C., Smith, C.L., Lee, K.S., Hong, M.E., Kweon, D.H., Stephanopoulos, G. & Jin, Y.S. Restoration of growth phenotypes of ''Escherichia coli'' DH5alpha in minimal media through reversal of a point mutation in ''purB''. '''Appl Environ Microbiol''' 76, 6307-6309 (2010). [http://dx.doi.org/10.1128/AEM.01210-10 Link], [http://www.sciencedaily.com/releases/2010/11/101111160547.htm Related News1], [http://www.biotechniques.com/news/The-key-to-the-meaning-of-life-Harder-better-faster-stronger-E.-coli/biotechniques-307403.html Related News2]
* Hong, M.E., Lee, K.S., Yu, B.J., Sung, Y.J., Park, S.M., Koo, H.M., Kweon, D.H., Park, J.C. & Jin, Y.S. Identification of gene targets eliciting improved alcohol tolerance in ''Saccharomyces cerevisiae'' through inverse metabolic engineering. '''J Biotechnol''' 149, 52-59 (2010). [http://dx.doi.org/10.1016/j.jbiotec.2010.06.006 Link], [http://www.sciencedaily.com/releases/2010/08/100819112220.htm Related News]
 
===2009===
* Tyo, K.E., Jin, Y.S., Espinoza, F.A. & Stephanopoulos, G. Identification of gene disruptions for increased poly-3-hydroxybutyrate accumulation in ''Synechocystis'' PCC 6803. '''Biotechnol Prog''' 25, 1236-1243 (2009). [http://dx.doi.org/10.1002/btpr.228 Link]
* Shin, J.Y., Shin, J.I., Kim, J.S., Yang, Y.S., Hwang, Y., Yang, J.S., Shin, D., Seo, J.H., Jin, Y.S., Park, Y.C., Hwang, J.S. & Kweon, D.H. Assembly of Coenzyme Q10 nanostructure resembling nascent discoidal high density lipoprotein particle. '''Biochem Biophys Res Commun''' 388, 217-221 (2009). [http://www.sciencedirect.com/science/article/pii/S0006291X09015137 Link]
* Lee, K., Shin, J.Y., Yang, Y.S., Shin, J.I., Park, Y.C., Seo, J.H., Park, T.H., Shin, C.S., Jin, Y.S. & Kweon, D.H. Towards a microarray of functional membrane proteins: Assembly of a surface-attachable, membrane-protein-anchored membrane structure using apolipoprotein A-1. '''Enz. Microb Tech''' 44, 217-222 (2009). [http://www.sciencedirect.com/science/article/pii/S0141022908002767 Link]
* Lee, J., Seo, E., Kweon, D.H., Park, K. & Jin, Y.S. Fermentation of rice bran and defatted rice rran for butanol production using Clostridium beijerinckii NCIMB 8052. '''J. Microbiol. Biotechnol.''' 19, 482-490 (2009). [http://www.jmb.or.kr/journal/viewJournal.html?year=2009&vol=19&num=5&page=482 Link]
 
===2008===
* Lee, K.S., Chang, E.H., Shin, J.Y., Kweon, D.H., Park, K.M. & Jin, Y.S. Production of casein phosphopeptides using Streptococcus faecalis var. liquefaciens cell immobilization. '''Korean J Biotechnol Bioeng''' 23, 59-64 (2008). [http://www.koreascience.or.kr/article/ArticleFullRecord.jsp?cn=KHGSBC_2008_v23n1_59 Link]
* Jung, C.H., Yang, Y.S., Kim, J.S., Shin, J.I., Jin, Y.S., Shin, J.Y., Lee, J.H., Chung, K.M., Hwang, J.S., Oh, J.M., Shin, Y.K. & Kweon, D.H. A search for synthetic peptides that inhibit soluble N-ethylmaleimide sensitive-factor attachment receptor-mediated membrane fusion. '''FEBS J''' 275, 3051-3063 (2008). [http://onlinelibrary.wiley.com/doi/10.1111/j.1742-4658.2008.06458.x/full Link]
 
===2006-2007===
*Jung, S.C., Chung, C.Y., Kim, J.S., Kweon, D.H., Park, K.M. & Jin, Y.S. Policosanol production from rice bran oil byproducts. '''Food Eng Prog''' 11, 293-297 (2007) [http://agris.fao.org/agris-search/search.do?recordID=KR2008001949 Link]
* Jin, Y.S. & Stephanopoulos, G. Multi-dimensional gene target search for improving lycopene biosynthesis in Escherichia coli. '''Metab Eng''' 9, 337-347 (2007). [http://www.sciencedirect.com/science/article/pii/S109671760700016X Link]
* Jeffries, T.W., Grigoriev, I.V., Grimwood, J., Laplaza, J.M., Aerts, A., Salamov, A., Schmutz, J., Lindquist, E., Dehal, P., Shapiro, H., Jin, Y.S., Passoth, V. & Richardson, P.M. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. '''Nat Biotechnol''' 25, 319-326 (2007). [http://www.nature.com/nbt/journal/v25/n3/abs/nbt1290.html Link]
* Laplaza, J.M., Torres, B.R., Jin, Y.S. & Jeffries, T.W. Sh ble and Cre adapted for functional genomics and metabolic engineering of Pichia stipitis. '''Enz Microb Tech''' 38, 741-747 (2006). [http://www.sciencedirect.com/science/article/pii/S0141022905003492 Link]
* Jin, Y.S., Cruz, J. & Jeffries, T.W. Xylitol production by a Pichia stipitis D-xylulokinase mutant. '''Appl Microbiol Biotechnol''' 68, 42-45 (2005). [http://link.springer.com/article/10.1007/s00253-004-1854-5 Link]
* Jin, Y.S., Alper, H., Yang, Y.T. & Stephanopoulos, G. Improvement of xylose uptake and ethanol production in recombinant Saccharomyces cerevisiae through an inverse metabolic engineering approach. '''Appl Environ Microbiol''' 71, 8249-8256 (2005). [http://aem.asm.org/content/71/12/8249.short Link]
* Alper, H., Jin, Y.S., Moxley, J.F. & Stephanopoulos, G. Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli. '''Metab Eng''' 7, 155-164 (2005). [http://www.sciencedirect.com/science/article/pii/S1096717604000849 Link]
* Jin, Y.S., Laplaza, J.M. & Jeffries, T.W. Saccharomyces cerevisiae engineered for xylose metabolism exhibits a respiratory response. '''Appl Environ Microbiol''' 70, 6816-6825 (2004). [http://aem.asm.org/content/70/11/6816.short Link]
* Jin, Y.S. & Jeffries, T.W. Stoichiometric network constraints on xylose metabolism by recombinant Saccharomyces cerevisiae. '''Metab Eng''' 6, 229-238 (2004). [http://www.sciencedirect.com/science/article/pii/S1096717604000199 Link]
* Jeffries, T.W. & Jin, Y.S. Metabolic engineering for improved fermentation of pentoses by yeasts. '''Appl Microbiol Biotechnol''' 63, 495-509 (2004). [http://link.springer.com/article/10.1007/s00253-003-1450-0 Link]
* Jin, Y.S., Ni, H., Laplaza, J.M. & Jeffries, T.W. Optimal growth and ethanol production from xylose by recombinant Saccharomyces cerevisiae require moderate D-xylulokinase activity. '''Appl Environ Microbiol''' 69, 495-503 (2003). [http://aem.asm.org/content/69/1/495.short Link]
* Jin, Y.S. & Jeffries, T.W. Changing flux of xylose metabolites by altering expression of xylose reductase and xylitol dehydrogenase in recombinant Saccharomyces cerevisiae. '''Appl Biochem Biotechnol''' 105 -108, 277-286 (2003). [http://link.springer.com/article/10.1385/ABAB:106:1-3:277#page-1 Link]
* Jin, Y.S., Jones, S., Shi, N.Q. & Jeffries, T.W. Molecular cloning of XYL3 (D-xylulokinase) from Pichia stipitis and characterization of its physiological function. '''Appl Environ Microbiol''' 68, 1232-1239 (2002). [http://aem.asm.org/content/68/3/1232.short Link]
* Jin, Y.S., Lee, T.H., Choi, Y.D., Ryu, Y.W. & Seo, J.H. Conversion of xylose to ethanol by recombinant Saccharomyces cerevisiae containing genes for xylose reductase and xylitol dehydrogenase from Pichia stipitis. '''J Microbiol Biotechnol''' 10, 564-567 (2000). [http://cat.inist.fr/?aModele=afficheN&cpsidt=1483799 Link]
* Jeffries, T.W. & Jin, Y.S. Ethanol and thermotolerance in the bioconversion of xylose by yeasts. '''Adv Appl Microbiol''' 47, 221-268 (2000). [http://www.ncbi.nlm.nih.gov/pubmed/12876799 Link]

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Peer-reviewed articles

2016

  • Oh, E., Skerker, J.M., Kim, S.R., Wei, N., Turner, T.L., Maurer, M., Arkin, A.P., Jin, Y.S. Gene amplification on demand accelerates cellobiose utilization in engineered Saccharomyces cerevisiae. Applied and Environmental Microbiology (in press)
  • Xia, P., Zhang, G.C., Liu, J., Kwak, S., Tsai, C.S., Kong, I.I., Sung, B.H., Sohn, J.H., Wang, S.G., Jin, Y.S. GroE chaperonins assisted functional expression of bacterial enzymes in Saccharomyces cerevisiae. Biotechnology and Bioengineering (in press)
  • Liu, J., Kong, I.I., Zhang, G., Jayakody, L., Kim, H., Xia, P.F., Kwak, S., Sung, B.H., Sohn, J.H., Walukiewicz, H., Rao, C., Jin, Y.S. Metabolic engineering of a probiotic Saccharomyces boulardii. Applied and Environmental Microbiology (in press)
  • Lia, X., Parka, A., Estrelaa, R., Kim, S.R., Jin, Y.S., Cate, J.H.D. Comparison of xylose fermentation by two high-performance engineered strains of Saccharomyces cerevisiae. Biotechnology Reports (in press)
  • Kim, J.S., Cho, D.H., Heo, P., Jung, S.C., Park, M., Oh, E.J., Sung, J., Kim, P.J., Lee, S., Lee, D., Lee, S., Lee, C.H., Shin, D., Jin, Y.S., Kweon, D.H. Fumarate-mediated persistence of Escherichia coli against antibiotics. Antimicrobial Agents and Chemotherapy (in press)

2015

  • Xu, H., Kim, S., Sorek, H., Lee, Y., Jeong, D., Kim, J.Y., Oh, E.J., Yun, E.J., Wemmer, D.E., Kim, K.H., Jin, Y.S., Kim, S.R. (2015), PHO13 Deletion-Induced Transcriptional Activation Prevents Sedoheptulose Accumulation during Xylose Metabolism in Engineered Saccharomyces cerevisiae. Metabolic Engineering (Accepted)
  • Jayakody, L.N., Lane, S., Kim, H., Jin, Y.S. (2015), Mitigating health risks associated with alcoholic beverages through metabolic engineering. Current Opinions in Biotechnology (In press)
  • Park, Y.C., Oh, E.J., Jo, J.H., Jin, Y.S., Seo, J.H. (2015) Recent advances in biological production of sugar alcohols. Current Opinions in Biotechnology (In press)
  • Zhang, G.C., Liu, J.J., Kong, I.I., Kwak, S., Jin, Y.S. (2015), Combining C6 and C5 sugar metabolism for enhancing microbial bioconversion. Current Opinions in Chemical Biology (In press)
  • Turner, T.L., Zhang, G.-C., Oh, E.J., Subramaniam, V., Adiputra, A., Subramaniam, V., Skory, C.D., Jang, J.Y., Yu, B.J., Park, I. and Jin, Y.-S. (2015), Lactic acid production from cellobiose and xylose by engineered Saccharomyces cerevisiae. Biotechnololgy and Bioengineering Link (In press)
  • Yun, E.J., Kwak, S., Kim, S.R., Park, Y.C., Jin, Y.S., Kim, K. H. Production of (S)-3-hydroxyburate by metabolically engineered Saccharomyces cerevisiae. Journal of Biotechnology 209 (2015): 23-30. Link
  • Liao, C., Seo, S.O., Celik, V., Liu, H., Kong, W., Wang, Y., Blaschek, H., Jin, Y.S., Lu, T. Integrated, systems metabolic picture of the acetone-butanol-ethanol fermentation by Clostridium acetobutylicum. Proceedings of the National Academy of Sciences 112.27 (2015): 8505-8510. Link
  • Turner, T.L., Zhang, G.C., Kim, S.R., Subramaniam, V., Steffen, D., Skory, C.D., Jang, J.Y., Yu, B.J., Jin, Y.S. Lactic acid production from xylose by engineered Saccharomyces cerevisiae without PDC or ADH deletion. Applied Microbiology and Biotechnology 99.19 (2015): 8023-8033. Link
  • Tsai, C.S., Kong, I.I., Lesmana, A., Million, G., Zhang, G.C., Kim, S.R., Jin, Y.S. Rapid and marker-free Cas9/CRISPR refactoring yields equivalent xylose-utilization performance in yeast. Biotechnology and Bioengineering 112 (2015): 2406–2411. doi:10.1002/bit.25632 Link
  • Kim, S., Sung, J., Foo, M., Jin, Y.S., Kim, P.J. Uncovering the nutritional landscape of food. Plos One 10(4), e0118697 Link
  • Kim, J.W., Seo, S.O., Zhang, G.C., Jin, Y.S., Seo, J.H. Expression of Lactococcus lactis NADH oxidase increases 2,3-butanediol production in Pdc-deficient Saccharomyces cerevisiae. Bioresource Technology 191 (2015): 512-519. Link
  • Kim, S.K., Jin, Y.S., Cho,I.G., Park, Y.C., Seo, J.H. Enhanced tolerance of Saccharomyces cerevisiae to multiple lignocellulose-derived inhibitors through modulation of spermidine contents. Metabolic Engineering 29 (2015): 46-55. Link
  • Kim, S.M., Guo, J., Kwak, S., Jn, Y.S., Lee, D.K., Singh, V. Effects of genetic variation and growing condition of Prairie Cordgrass on feedstock composition and ethanol yield. Bioresource Technology 183 (2015): 70-77. Link
  • Li, X., Vivian, Y.Y., Lin, Y., Chomvong, K., Estrela, R., Liang, J.M., Znameroski, E.A., Feehan, J., Kim, S.R., Jin, Y.S., Glass, N.L., Cate, J.H.D. Expanding xylose metabolism in yeast for plant cell wall conversion to biofuels. eLife 2015 Feb 3;4. doi: 10.7554/eLife.05896.Link
  • Lewis, Z.T., Totten, S.M., Smilowitz, J.T., Popovic, M., Parker, E., Lemay, D.G., Van Tassell, M.L., Miller, M.J., Jin, Y.S., German, J.B., Lebrilla, C.B., Mills, D.A. Maternal Fucosyltransferase 2 Status Affects the Gut Bifidobacterial Communities of Breastfed Infants. Microbiome 10;3:13. doi: 10.1186/s40168-015-0071-z. eCollection 2015 Link
  • Yi, W., Zhang, X., Seo, S., Choi, K., Ting, L., Jin, Y.S., Hans, B. Markerless chromosomal gene deletion in Clostridium beijerinckii using CRISPR/Cas9 system. Journal of Biotechnology 200 (2015): 1-5. Link
  • Wei, N., Oh, E.J., Million, G., Cate, J., Jin, Y.S. Simultaneous utilization of cellobiose, xylose, and acetic acid from lignocellulosic biomass for biofuel production by an engineered yeast platform. ACS Synthetic Biology 4(6), 707-713. Link

2014

  • Kim, S.R., Xu, H., Lesmana, A., Kuzmanovic, U., Au, M., Florencia, C., Oh, E.J., Zhang, G., Kim, H.K., and Jin, Y.S. Deletion of PHO13 encoding HAD type IIA phosphatase results in upregulation of the pentose phosphate pathway in yeast. Applied and Environmental Microbiology 81(5):1601-9. doi: 10.1128/AEM.03474-14. Link
  • Quarterman, J., Kim, S.R., Kim, P.J., Jin, Y.S. Enhanced hexose fermentation by Saccharomyces cerevisiae through integration of stoichiometric modeling and genetic screening. Journal of Biotechnology Link
  • Kim, T. Y., Oh, E. J., Jin, Y. S., Oh, M. K. Improved resistance against oxidative stress of engineered cellobiose-fermenting Saccharomyces cerevisiae revealed by metabolite profiling. Biotechnology and Bioprocess Engineering, 19(6), 951-957. Link
  • Lane, S., Zhang, S., Wei, N., Rao, C., Jin, Y.S. Development and Physiological Characterization of Cellobiose-Consuming Yarrowia lipolytica. Biotechnology & Bioengineering 112(5):1012-22. doi: 10.1002/bit.25499. Link
  • Zhang, G., Kong, I.I., Kim, H., Liu, J., Cate, J.H.D., Jin, Y.S. Construction of a quadruple auxotrophic mutant of an industrial polyploidy Saccharomyces cerevisiae using RNA-guided Cas9 nuclease. Applied and Environmental Microbiology Link
  • Tsai, C.S., Kwak, S., Turner, T.L., Jin, Y.S. Yeast synthetic biology toolbox and applications for biofuel production. FEMS Yeast Research doi: 10.1111/1567-1364.12206. Link
  • Lin, Y., Chomvong, L., Acosta-Sampson, L., Estrela, R., Galazka, J.M., Kim, S.R., Jin, Y.S., Cate, J.H.D. Leveraging transcription factors to speed cellobiose fermentation by Saccharomyces cerevisiae. Biotechnology for Biofuels Link
  • Chomvong, K., Kordic, V., Li, X., Bauer, S., Gillespie. A.E., Ha, S.J., Oh, E.J., Galazka, J.M., Jin, Y.S., Cate, J.H. Overcoming inefficient cellobiose fermentation by cellobiose phosphorylase in the presence of xylose. Biotechnology for Biofuels Link
  • Hong, N., Seo, S.S., Oh, E.J., Seo, J.H., Cate, J.H., Jin, Y.S. 2,3-Butanediol production from cellobiose by engineered Saccharomyces cerevisiae. Applied Microbiology and Biotechnology Link
  • Kim, S.J., Seo, S.O., Park, Y.C., Jin, Y.S., Seo, J.H. Production of 2,3-Butanediol from xylose by engineered Saccharomyces cerevisiae. Journal of Biotechnology Link

2013

  • Bae, Y.H., Kang, K.H., Jin, Y.S., Seo, J.H. Molecular cloning and expression of fungal cellobiose transporters and β-glucosidases conferring efficient cellobiose fermentation in Saccharomyces cerevisiae. Journal of Biotechnology, 169, 34-41 Link
  • Kim, H., Lee, W.H., Galazka, J.M., Cate, J.H., Jin, Y.S. Analysis of cellodextrin transporters from Neurospora crassa in Saccharomyces cerevisiae for cellobiose fermentation. Applied Microbiology and Biotechnology, 1-8 Link
  • Ha, S.J., Kim, S.R., Kim, H., Du, J., Cate, J.H., Jin, Y.S. Continuous co-fermentation of cellobiose and xylose by engineered Saccharomyces cerevisiae. Bioresource Technology, 149, 525-531 Link
  • Li, S., Ha, S.J., Kim, H.J., Galazka, J.M., Cate, J.H., Jin, Y.S., Zhao, H. Investigation of the functional role of aldose 1-epimerase in engineered cellobiose utilization. Journal of Biotechnology 168, 1-6. Link
  • Kim, H.J., Lee, H.R., Kim, C.S., Jin, Y.S., Seo, J.H. Investigation of protein expression profiles of erythritol-producing Candida magnoliae in response to glucose perturbation. Enzyme and Microbial Technology 53, 174-180 Link
  • Kim, H.J., Turner, T.L., Jin, Y.S. Combinatorial genetic perturbation to refince metabolic circuits for producing biofuels and biochemicals. Biotechnology Advances 31, 976-985 Link
  • Kim, S.J., Seo, S.O., Jin, Y.S., Seo, J.H. Production of 2,3-butanediol by engineered Saccharomyces cerevisiae. Bioresource Technology 146, 274-281 Link
  • Wang, Y., Li, X.Z., Milne, C., Janssen, H., Lin, W., Phan, G., Hu, H., Jin, Y.S., Price, N., Blaschek, H. Development of a gene knockout system using mobile group II introns (Targetron) and genetic disruption of acid production pathways in Clostridium beijerinckii. Applied and Environmental Microbiology 79, 5853-5863 Link
  • Lee, W.H., Nan, H., Kim, H.J., Jin, Y.S. Simultaneous saccharification and fermentation by engineered Saccharomyces cerevisiae without supplementing extracellular beta-glucosidase. Journal of Biotechnology 167, 316-322 Link
  • Kim, S.R., Park, Y.C., Jin, Y.S., Seo, J.H. Strain engineering of Saccharomyces cerevisiae for enhanced xylose metabolism. Biotechnology Advances 31, 851-861 Link
  • Wei, N., Xu, H., Kim, S.R., & Jin, Y.S. Deletion of FPS1 coding for aquaglyceroporin Fps1p improves xylose fermentation by engineered Saccharomyces cerevisiae. Applied and Environmental Microbiology Link
  • Kim, S.R., Kwee, N.R., Kim, H.J. & Jin, Y.S. Feasibility of xylose fermentation by engineered Saccharomyces cerevisiae overexpressing endogenous aldose reductase (GRE3), xylitol dehydrogenase (XYL2) and xylulokinase (XYL3) from Scheffersomyces stipitis. FEMS Yeast Research Link
  • Lee, W.H., Kim, M.D., Jin, Y.S. & Seo, J.H. Engineering of NADPH regenerators in Escherichia coli for enhanced biotransformation. Applied Microbiology and Biotechnology Link
  • Kim, S.R., Skerker, J.M., Kang, W., Lesmana, A., Wei, N., Arkin, A.P. & Jin, Y.S. Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in Saccharomyces cerevisiae. PLOS One Link
  • Kim, S.R., Lee, K.S., Kong, I.K., Lesmana, A., Lee, W.H., Seo, J.H., Kweon, D.H. & Jin, Y.S. Construction of an efficient xylose-fermenting diploid Saccharomyces cerevisiae strain through mating of two engineered haploid strains capable of xylose assimilation. Journal of Biotechnology Link

2012

  • Guo, B., Zhang, Y., Yu, G., Lee, W.H., Jin, Y.S.& Morgenroth, E., Two-stage acidic-alkaline hydrothermal pretreatment of lignocellulose for the high recovery of cellulose and hemicellulose sugars. Applied Biochemistry and Biotechnology Link
  • Ha,S.J., Kim, H., Lin, Y., Jang, M.U., Galazka, J.M., Kim, T.J., Cate. J.H. & Jin, Y.S. Single amino acid substitutions of HXT2.4 from Scheffersomyces stipitis lead to improved cellobiose fermentation by engineered Saccharomyces cerevisiae. Applied and Environmental Microbiology Link
  • Ha, S.J., Galazka, J.M., Oh, E.J., Kordic, V., Kim, H., Jin, Y.S., & Cate, J.H. Energetic benefits and rapid cellobiose fermentation by Saccharomyces cerevisiae expressing cellobiose phosphorylase and mutant cellodextrin transporters. Metabolic Engineering Link
  • Wei, N. Quarterman, J., & Jin, Y.S. Marine macroalgae: an untapped resource for producing fuels and chemicals. Trends in Biotechnol. Link
  • Oh, E.J., Ha, S.J., Kim, S.R., Lee, W.H., Galazka, J.M., Cate, J.H. & Jin, Y.S. Enhanced xylitol production through simultaneous co-utilization of cellobiose and xylose by engineered Saccharomyces cerevisiae. Metabolic Engineering Link
  • Lee, K.S., Kim, J.S., Heo, P., Yang, T.J., Sung, Y.J., Cheon, Y., Koo, H.M., Yu, B.J., Seo, J.H., Jin, Y.S., Park, J.C., Kweon, D.H. Characterization of Saccharomyces cerevisiae promoters for heterologous gene expression in Kluyveromyces marxianus. Appl Microbiol Biotechnol Link
  • Lee, W.H., Pathanibul, P., Quarterman, J., Jo, J.H., Han, N.S., Miller, M.J., Jin, Y.S.& Seo, J.H. Whole cell biosynthesis of a functional oligosaccharide, 2-fucosyllactose, using engineered Escherichia coli. Microbial Cell Factories 11, 48 Link
  • Lee, W.H., Seo, S.O., Bae, Y.H., Nan, H., Jin, Y.S.& Seo, J.H. Isobutanol production in engineered Saccharomyces cerevisiae by overexpression of 2-ketoisovalerate decarboxylase and valine biosynthetic enzymes. Bioprocess and Biosystems Engineering 35, 1467-75 Link
  • Kim, S.R., Ha, S.J., Kong, I.I., & Jin, Y.S. High expression of XYL2 coding for xylitol dehydrogenase is necessary for efficient xylose fermentation by engineered Saccharomyces cerevisiae Metab. Eng. 14, 336-343 Link
  • Guo, B., Zhang, Y., Ha, S. J., Jin, Y.S.& Morgenroth, E. Combined biomimetic and inorganic acids hydrolysis of hemicellulose in Miscanthus for bioethanol production. Bioresource Technol 110,278-87 Link
  • Kim, S.R., Ha, S.J., Wei, N., Oh, E.J., & Jin, Y.S. Simultaneous co-fermenation of mixed sugars: a promising strategy for producing cellulosic ethnaol. Trend Biotechnol 30,274–282 Link
  • Jin, Y.S. & Cate, J.H. Model-guided strain improvement: Simultaneous hydrolysis and co-fermentation of cellulosic sugars. Biotechnol. J. 7,361-73. Link
  • Cha, C., Kim, S.R., Jin, Y.S. & Kong, H.J. Tuning structural durability of yeast-encapsulating alginate gel beads with interpenetrating networks for sustained bioethanol production. Biotechnol. Bioeng. 109,63-73 Link

2011

  • Lu, C.H., Choi, J.H., Engelmann Moran, N., Jin, Y.S. & Erdman, J. Laboratory-scale production of 13C-labeled lycopene and phytoene by bioengineered Escherichia. J Agric Food Chem Link
  • Kim, J.S., Heo P., Yang. T.J., Lee, K.S., Jin Y.S., Kim, S. K., Shin, D. & Kweon, D.H. Bacterial persisters tolerate antibiotics by not producing hydroxyl radicals. Biochem. Biophys. Res. Commun. Link
  • Milne, C.B., Eddy, J.A., Raju, R., Ardekani,S., Kim, P.J., Senger, R. S., Jin, Y.S., Blaschek, H.P. & Price, N.D. Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052 BMC Systems Biology 5:130. Link
  • Ha, S.J., Wei, Q., Kim, S.R., Galazka, J., Cate, J.H. & Jin, Y.S. Co-fermentation of cellobiose and galactose by an engineered Saccharomyces cerevisiae. Appl. Environ. Microbiol. 77, 5822-5826. Link, Related News
  • Ha, S.J., Kim, S.R., Choi J.H., Park, M.S. & Jin Y.S. Xylitol does not inhibit xylose fermentation by engineered Saccharomyces cerevisiae expressing xylA as severely as it inhibits xylose isomerase reaction in vitro. Appl Microbiol Biotechnol Link
  • Ha, S.J., Galazka J.M., Rin Kim S., Choi J.H., Yang X., Seo J.H., Louise Glass N., Cate J.H., & Jin Y.S.Engineered Saccharomyces cerevisiae capable of simultaneous cellobiose and xylose fermentation. Proc Natl Acad Sci U S A. 108, 504-509 (2011) Link,In This Issue-PNAS, Related News
  • Lee, K.S., Hong, M.E., Jung, S.C., Ha, S.J., Yu, B.J., Koo, H.M., Park, S.M., Seo, J.H., Kweon, D.H., Park, J.C. & Jin, Y.S. Improved galactose fermentation of Saccharomyces cerevisiae through inverse metabolic engineering. Biotechnol Bioeng. 108, 621-632. Link

2010

  • Kim, S.R., Lee, K.S., Choi, J.H., Ha, S.J., Kweon, D.H., Seo, J.H. & Jin, Y.S. Repeated-batch fermentations of xylose and glucose-xylose mixtures using a respiration-deficient Saccharomyces cerevisiae engineered for xylose metabolism. J Biotechnol 150, 404-407 (2010). Link
  • Jung, S.C., Smith, C.L., Lee, K.S., Hong, M.E., Kweon, D.H., Stephanopoulos, G. & Jin, Y.S. Restoration of growth phenotypes of Escherichia coli DH5alpha in minimal media through reversal of a point mutation in purB. Appl Environ Microbiol 76, 6307-6309 (2010). Link, Related News1, Related News2
  • Hong, M.E., Lee, K.S., Yu, B.J., Sung, Y.J., Park, S.M., Koo, H.M., Kweon, D.H., Park, J.C. & Jin, Y.S. Identification of gene targets eliciting improved alcohol tolerance in Saccharomyces cerevisiae through inverse metabolic engineering. J Biotechnol 149, 52-59 (2010). Link, Related News

2009

  • Tyo, K.E., Jin, Y.S., Espinoza, F.A. & Stephanopoulos, G. Identification of gene disruptions for increased poly-3-hydroxybutyrate accumulation in Synechocystis PCC 6803. Biotechnol Prog 25, 1236-1243 (2009). Link
  • Shin, J.Y., Shin, J.I., Kim, J.S., Yang, Y.S., Hwang, Y., Yang, J.S., Shin, D., Seo, J.H., Jin, Y.S., Park, Y.C., Hwang, J.S. & Kweon, D.H. Assembly of Coenzyme Q10 nanostructure resembling nascent discoidal high density lipoprotein particle. Biochem Biophys Res Commun 388, 217-221 (2009). Link
  • Lee, K., Shin, J.Y., Yang, Y.S., Shin, J.I., Park, Y.C., Seo, J.H., Park, T.H., Shin, C.S., Jin, Y.S. & Kweon, D.H. Towards a microarray of functional membrane proteins: Assembly of a surface-attachable, membrane-protein-anchored membrane structure using apolipoprotein A-1. Enz. Microb Tech 44, 217-222 (2009). Link
  • Lee, J., Seo, E., Kweon, D.H., Park, K. & Jin, Y.S. Fermentation of rice bran and defatted rice rran for butanol production using Clostridium beijerinckii NCIMB 8052. J. Microbiol. Biotechnol. 19, 482-490 (2009). Link

2008

  • Lee, K.S., Chang, E.H., Shin, J.Y., Kweon, D.H., Park, K.M. & Jin, Y.S. Production of casein phosphopeptides using Streptococcus faecalis var. liquefaciens cell immobilization. Korean J Biotechnol Bioeng 23, 59-64 (2008). Link
  • Jung, C.H., Yang, Y.S., Kim, J.S., Shin, J.I., Jin, Y.S., Shin, J.Y., Lee, J.H., Chung, K.M., Hwang, J.S., Oh, J.M., Shin, Y.K. & Kweon, D.H. A search for synthetic peptides that inhibit soluble N-ethylmaleimide sensitive-factor attachment receptor-mediated membrane fusion. FEBS J 275, 3051-3063 (2008). Link

2006-2007

  • Jung, S.C., Chung, C.Y., Kim, J.S., Kweon, D.H., Park, K.M. & Jin, Y.S. Policosanol production from rice bran oil byproducts. Food Eng Prog 11, 293-297 (2007) Link
  • Jin, Y.S. & Stephanopoulos, G. Multi-dimensional gene target search for improving lycopene biosynthesis in Escherichia coli. Metab Eng 9, 337-347 (2007). Link
  • Jeffries, T.W., Grigoriev, I.V., Grimwood, J., Laplaza, J.M., Aerts, A., Salamov, A., Schmutz, J., Lindquist, E., Dehal, P., Shapiro, H., Jin, Y.S., Passoth, V. & Richardson, P.M. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Nat Biotechnol 25, 319-326 (2007). Link
  • Laplaza, J.M., Torres, B.R., Jin, Y.S. & Jeffries, T.W. Sh ble and Cre adapted for functional genomics and metabolic engineering of Pichia stipitis. Enz Microb Tech 38, 741-747 (2006). Link
  • Jin, Y.S., Cruz, J. & Jeffries, T.W. Xylitol production by a Pichia stipitis D-xylulokinase mutant. Appl Microbiol Biotechnol 68, 42-45 (2005). Link
  • Jin, Y.S., Alper, H., Yang, Y.T. & Stephanopoulos, G. Improvement of xylose uptake and ethanol production in recombinant Saccharomyces cerevisiae through an inverse metabolic engineering approach. Appl Environ Microbiol 71, 8249-8256 (2005). Link
  • Alper, H., Jin, Y.S., Moxley, J.F. & Stephanopoulos, G. Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli. Metab Eng 7, 155-164 (2005). Link
  • Jin, Y.S., Laplaza, J.M. & Jeffries, T.W. Saccharomyces cerevisiae engineered for xylose metabolism exhibits a respiratory response. Appl Environ Microbiol 70, 6816-6825 (2004). Link
  • Jin, Y.S. & Jeffries, T.W. Stoichiometric network constraints on xylose metabolism by recombinant Saccharomyces cerevisiae. Metab Eng 6, 229-238 (2004). Link
  • Jeffries, T.W. & Jin, Y.S. Metabolic engineering for improved fermentation of pentoses by yeasts. Appl Microbiol Biotechnol 63, 495-509 (2004). Link
  • Jin, Y.S., Ni, H., Laplaza, J.M. & Jeffries, T.W. Optimal growth and ethanol production from xylose by recombinant Saccharomyces cerevisiae require moderate D-xylulokinase activity. Appl Environ Microbiol 69, 495-503 (2003). Link
  • Jin, Y.S. & Jeffries, T.W. Changing flux of xylose metabolites by altering expression of xylose reductase and xylitol dehydrogenase in recombinant Saccharomyces cerevisiae. Appl Biochem Biotechnol 105 -108, 277-286 (2003). Link
  • Jin, Y.S., Jones, S., Shi, N.Q. & Jeffries, T.W. Molecular cloning of XYL3 (D-xylulokinase) from Pichia stipitis and characterization of its physiological function. Appl Environ Microbiol 68, 1232-1239 (2002). Link
  • Jin, Y.S., Lee, T.H., Choi, Y.D., Ryu, Y.W. & Seo, J.H. Conversion of xylose to ethanol by recombinant Saccharomyces cerevisiae containing genes for xylose reductase and xylitol dehydrogenase from Pichia stipitis. J Microbiol Biotechnol 10, 564-567 (2000). Link
  • Jeffries, T.W. & Jin, Y.S. Ethanol and thermotolerance in the bioconversion of xylose by yeasts. Adv Appl Microbiol 47, 221-268 (2000). Link
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