Jin:Publications

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==Peer-reviewed articles==
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[[Image:Jin word.jpg|500px|right|Kew words]]
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===2012===
 
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*Ha, S.J., Galazka, J.M., Oh, E.J., Kordic, V., Kim, H., Jin, Y.S., & Cate, J.H. Energetic benefits and rapid cellobiose fermentation by Saccharomyces cerevisiae expressing cellobiose phosphorylase and mutant cellodextrin transporters. Metabolic Engineering (accepted)
 
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*Wei, N. Quarterman, J., & Jin, Y.S. Marine macroalgae: an untapped resource for producing fuels and chemicals. Trends in Biotechnol. (accepted)
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===2016===
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*Oh, E.J., Ha, S.J., Kim, S.R., Lee, W.H., Galazka, J.M., Cate, J.H. & Jin, Y.S. Enhanced xylitol production through simultaneous co-utilization of cellobiose and xylose by engineered ''Saccharomyces cerevisiae''. Metabolic Engineering (accepted)
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*Turner, T. L., Kim, H., Kong, II, Liu, J. J., Zhang, G. C., and Jin, Y. S. (2016) Engineering and evolution of ''Saccharomyces cerevisiae'' to produce biofuels and chemicals. '''Advances in Biochemical Engineering/Biotechnology''', in press
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*Lee, K.S., Kim, J.S., Heo, P., Yang, T.J., Sung, Y.J., Cheon, Y., Koo, H.M., Yu, B.J., Seo, J.H., Jin, Y.S., Park, J.C., Kweon, D.H. Characterization of ''Saccharomyces cerevisiae'' promoters for heterologous gene expression in ''Kluyveromyces marxianus''. Appl Microbiol Biotechnol (accepted)
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*Lee, Y. J., Jin, Y. S., Cha, Y. L., and Seo, J. H. (2016) Bioethanol production from cellulosic hydrolysates by engineered industrial ''Saccharomyces cerevisiae''. '''Bioresource Technology''', in press
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*Lee, W.H., Pathanibul, P., Quarterman, J., Jo, J.H., Han, N.S., Miller, M.J., Jin, Y.S.& Seo, J.H. Whole cell biosynthesis of a functional oligosaccharide, 2-fucosyllactose, using engineered ''Escherichia coli''. Microbial Cell Factories 11, 48
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*Kim, J. W., Kim, J., Seo, S. O., Kim, K. H., Jin, Y. S., and Seo, J. H. (2016) Enhanced production of 2,3-butanediol by engineered ''Saccharomyces cerevisiae'' through fine-tuning of pyruvate decarboxylase and NADH oxidase activities. '''Biotechnology for Biofuels''', in press
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*Lee, W.H., Seo, S.O., Bae, Y.H., Nan, H., Jin, Y.S.& Seo, J.H. Isobutanol production in engineered ''Saccharomyces cerevisiae'' by overexpression of 2-ketoisovalerate decarboxylase and valine biosynthetic enzymes. Bioprocess and Biosystems Engineering 35, 1467-75
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*Turner, T.L., Kim, E., Hwang, C., Zhang, G.C., Liu, J.J., Jin, Y.S. (2016) Short communication: Conversion of lactose and whey into lactic acid by engineered yeast. '''Journal of Dairy Science''', in press
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*Kim, S.R., Ha, S.J., Kong, I.O.& Jin, Y.S. High expression of ''XYL2'' coding for xylitol dehydrogenase is necessary for efficient xylose fermentation by engineered ''Saccharomyces cerevisiae'' Metab. Eng. 14, 336-343
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*Xia, P. F., Zhang, G. C., Walker, B., Seo, S. O., Kwak, S., Liu, J., Kim, H., Ort, D., Wang, S. G., and Jin, Y. S. (2016) Recycling carbon dioxide during xylose fermentation by engineered ''Saccharomyces cerevisiae''. '''ACS Synthetic Biology''', in press
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*Guo, B., Zhang, Y., Ha, S. J., Jin, Y.S.& Morgenroth, E. Combined biomimetic and inorganic acids hydrolysis of hemicellulose in Miscanthus for bioethanol production. Bioresource Technol 110,278-87 [http://dx.doi.org/10.1016/j.biortech.2012.01.133 Link]
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*Park, J., Wang, Z., Lee, W.-H., Jameel, H., Jin, Y.-S., and Park, S. (2016) Effect of the two-stage autohydrolysis of hardwood on the enzymatic saccharification and subsequent fermentation with an efficient xylose-utilizing ''Saccharomyces cerevisiae''. '''BioResources''' 11, 9584-9595
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*Kim, S.R., Ha, S.J., Wei, N., Oh, E.J.,& Jin, Y.S. Simultaneous co-fermenation of mixed sugars: a promising strategy for producing cellulosic ethnaol. Trend Biotechnol 30,274–282 [http://dx.doi.org/10.1016/j.tibtech.2012.01.005 Link]
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*Choi, E. J., Kim, J. W., Kim, S. J., Seo, S. O., Lane, S., Park, Y. C., Jin, Y. S., and Seo, J. H. (2016) Enhanced production of 2,3-butanediol in pyruvate decarboxylase-deficient ''Saccharomyces cerevisiae'' through optimizing ratio of glucose/galactose. '''Biotechnology Journal''', in press
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*Jin, Y.S.& Cate, J.H. Model-guided strain improvement: Simultaneous hydrolysis and co-fermentation of cellulosic sugars. Biotechnol. J. 7,361-73. [http://onlinelibrary.wiley.com/doi/10.1002/biot.201100489/full Link]
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*Liu, J. J., Zhang, G. C., Oh, E. J., Pathanibul, P., Turner, T. L., and Jin, Y. S. (2016) Lactose fermentation by engineered ''Saccharomyces cerevisiae'' capable of fermenting cellobiose. '''Journal of Biotechnology''' 234, 99-104
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*Cha, C., Kim, S.R., Jin, Y.S. & Kong, H.J. Tuning structural durability of yeast-encapsulating alginate gel beads with interpenetrating networks for sustained bioethanol production. Biotechnol. Bioeng. 109,63-73 [http://onlinelibrary.wiley.com/doi/10.1002/bit.23258/abstract Link]
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*Seo, S. O., Wang, Y., Lu, T., Jin, Y. S., and Blaschek, H. P. (2016) Characterization of a ''Clostridium beijerinckii'' spo0A mutant and its application for butyl butyrate production. '''Biotechnology and Bioengineering''', in press
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===2011===
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*Zhang, G. C., Kong, II, Wei, N., Peng, D., Turner, T. L., Sung, B. H., Sohn, J. H., and Jin, Y. S. (2016) Optimization of an acetate reduction pathway for producing cellulosic ethanol by engineered yeast. '''Biotechnology and Bioengineering''', in press
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*Lu, C.H., Choi, J.H., Engelmann Moran, N., Jin, Y.S. & Erdman, J. Laboratory-scale production of 13C-labeled lycopene and phytoene by bioengineered ''Escherichia''. J Agric Food Chem  59,9996-10005.
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*Wang, Y., Zhang, Z. T., Seo, S. O., Lynn, P., Lu, T., Jin, Y. S., and Blaschek, H. (2016) Gene transcription repression in ''Clostridium beijerinckii'' using CRISPR-dCas9. '''Biotechnology and Bioengineering''', in press
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*Kim, J.S., Heo P., Yang. T.J., Lee, K.S., Jin Y.S., Kim, S. K., Shin, D. & Kweon, D.H. Bacterial persisters tolerate antibiotics by not producing hydroxyl radicals. Biochem. Biophys. Res. Commun. 413,105-10.
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*Bode, L., Contractor, N., Barile, D., Pohl, P., Prudden, A., Boons, G.-J., Jin, Y. S., and Jennewein, S. (2016) Human Milk Oligosaccharides: Challenges and opportunities '''Nutrition Reviews''', in press
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*Milne, C.B., Eddy, J.A., Raju, R., Ardekani,S., Kim, P.J., Senger, R. S., Jin, Y.S., Blaschek, H.P. & Price, N.D. Metabolic network reconstruction and genome-scale model of butanol-producing strain ''Clostridium beijerinckii'' NCIMB 8052 BMC Systems Biology 5:130. [http://www.biomedcentral.com/1752-0509/5/130 Link]
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*Quarterman, J., Skerker, J. M., Feng, X., Liu, I. Y., Zhao, H., Arkin, A. P., and Jin, Y. S. (2016) Rapid and efficient galactose fermentation by engineered ''Saccharomyces cerevisiae''. '''Journal of Biotechnology''' 229, 13-21
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*Ha, S.J., Wei, Q., Kim, S.R., Galazka, J., Cate, J.H. & Jin, Y.S. Co-fermentation of cellobiose and galactose by an engineered ''Saccharomyces cerevisiae''. Appl. Environ. Microbiol. 77, 5822-5826. [http://aem.asm.org/cgi/content/abstract/77/16/5822 Link], [http://www.dailycal.org/2011/08/30/team-doubles-efficiency-of-converting-seaweed-into-biofuel/ Related News]
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*Wang, Y., Zhang, Z. T., Seo, S. O., Lynn, P., Lu, T., Jin, Y. S., and Blaschek, H. P. (2016) Bacterial genome editing with CRISPR-Cas9: deletion, integration, single nucleotide modification, and desirable "clean" mutant selection in ''Clostridium beijerinckii'' as an example. '''ACS Synthetic Biology''' 15, 721-732
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*Ha, S.J., Kim, S.R., Choi J.H., Park, M.S. & Jin Y.S. Xylitol does not inhibit xylose fermentation by engineered ''Saccharomyces cerevisiae'' expressing ''xylA'' as severely as it inhibits xylose isomerase reaction ''in vitro''. Appl Microbiol Biotechnol (in press) [http://www.springerlink.com/content/q8724640851x5u25/ Link]
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*Oh, E. J., Skerker, J. M., Kim, S. R., Wei, N., Turner, T. L., Maurer, M. J., Arkin, A. P., and Jin, Y. S. (2016) Gene amplification on demand accelerates cellobiose utilization in engineered ''Saccharomyces cerevisiae''. '''Applied and Environmental Microbiology''' 82, 3631-3639
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*Ha, S.J., Galazka J.M., Rin Kim S., Choi J.H., Yang X., Seo J.H., Louise Glass N., Cate J.H., & Jin Y.S.Engineered ''Saccharomyces cerevisiae'' capable of simultaneous cellobiose and xylose fermentation. Proc Natl Acad Sci U S A. 108, 504-509 (2011) [http://www.pnas.org/content/108/2/504.abstract Link], [http://openwetware.org/images/8/80/Ha_PNAS.pdf PDF],[http://openwetware.org/images/d/d3/Ha_PNAS_SI.pdf Supporting Information], [http://www.pnas.org/content/108/2/435.full In This Issue-PNAS], [http://www.physorg.com/news/2010-12-scientists-major-obstacles-cellulosic-biofuel.html Related News]
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*Xu, H., Kim, S., Sorek, H., Lee, Y., Jeong, D., Kim, J., Oh, E. J., Yun, E. J., Wemmer, D. E., Kim, K. H., Kim, S. R., and Jin, Y. S. (2016) PHO13 deletion-induced transcriptional activation prevents sedoheptulose accumulation during xylose metabolism in engineered ''Saccharomyces cerevisiae''. '''Metabolic Engineering''' 34, 88-96
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*Lee, K.S., Hong, M.E., Jung, S.C., Ha, S.J., Yu, B.J., Koo, H.M., Park, S.M., Seo, J.H., Kweon, D.H., Park, J.C. & Jin, Y.S. Improved galactose fermentation of ''Saccharomyces cerevisiae'' through inverse metabolic engineering. Biotechnol Bioeng. 108, 621-632. [http://dx.doi.org/10.1002/bit.22988 Link]
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*Xia, P. F., Zhang, G. C., Liu, J. J., Kwak, S., Tsai, C. S., Kong, II, Sung, B. H., Sohn, J. H., Wang, S. G., and Jin, Y. S. (2016) GroE chaperonins assisted functional expression of bacterial enzymes in ''Saccharomyces cerevisiae''. '''Biotechnology and Bioengineering''' 113, 2149-2155
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*Seo, J. H., and Jin, Y. S. (2016) Editorial overview: Food biotechnology: Critical gap filler in the nexus of food, energy, and waste for a prosperous future. '''Current Opinion in Biotechnology''' 37, 4-7
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*Park, Y. C., Oh, E. J., Jo, J. H., Jin, Y. S., and Seo, J. H. (2016) Recent advances in biological production of sugar alcohols. '''Current Opinion in Biotechnology''' 37, 105-113
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*Liu, J. J., Kong, II, Zhang, G. C., Jayakody, L. N., Kim, H., Xia, P. F., Kwak, S., Sung, B. H., Sohn, J. H., Walukiewicz, H. E., Rao, C. V., and Jin, Y. S. (2016) Metabolic engineering of probiotic ''Saccharomyces boulardii''. '''Applied and Environmental Microbiology''' 82, 2280-2287
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*Li, X., Park, A., Estrela, R., Kim, S. R., Jin, Y. S., and Cate, J. H. D. (2016) Comparison of xylose fermentation by two high-performance engineered strains of ''Saccharomyces cerevisiae''. '''Biotechnology Reports''' 9, 53-56
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*Kim, J. S., Cho, D. H., Heo, P., Jung, S. C., Park, M., Oh, E. J., Sung, J., Kim, P. J., Lee, S. C., Lee, D. H., Lee, S., Lee, C. H., Shin, D., Jin, Y. S., and Kweon, D. H. (2016) Fumarate-mediated persistence of ''Escherichia coli'' against antibiotics. '''Antimicrobial Agents and Chemotherapy''' 60, 2232-2240
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*Jayakody, L. N., Lane, S., Kim, H., and Jin, Y. S. (2016) Mitigating health risks associated with alcoholic beverages through metabolic engineering. '''Current Opinion in Biotechnology''' 37, 173-181
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===2015===
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*Zhang, G. C., Liu, J. J., Kong, I. I., Kwak, S., and Jin, Y. S. (2015) Combining C6 and C5 sugar metabolism for enhancing microbial bioconversion. '''Current Opinion in Chemical Biology''' 29, 49-57
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*Yun, E. J., Kwak, S., Kim, S. R., Park, Y. C., Jin, Y. S., and Kim, K. H. (2015) Production of (S)-3-hydroxybutyrate by metabolically engineered ''Saccharomyces cerevisiae''. '''Journal of Biotechnology''' 209, 23-30
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*Wei, N., Oh, E. J., Million, G., Cate, J. H. D., and Jin, Y. S. (2015) Simultaneous utilization of cellobiose, xylose, and acetic acid from lignocellulosic biomass for biofuel production by an engineered yeast platform. '''ACS Synthetic Biology''' 4, 707-713
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*Wang, Y., Zhang, Z. T., Seo, S. O., Choi, K., Lu, T., Jin, Y. S., and Blaschek, H. P. (2015) Markerless chromosomal gene deletion in ''Clostridium beijerinckii'' using CRISPR/Cas9 system. '''Journal of Biotechnology''' 200, 1-5
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*Turner, T. L., Zhang, G. C., Oh, E. J., Subramaniam, V., Adiputra, A., Subramaniam, V., Skory, C. D., Jang, J. Y., Yu, B. J., Park, I., and Jin, Y. S. (2015) Lactic acid production from cellobiose and xylose by engineered ''Saccharomyces cerevisiae''. '''Biotechnology and Bioengineering''' 113, 1075-1083
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*Turner, T. L., Zhang, G. C., Kim, S. R., Subramaniam, V., Steffen, D., Skory, C. D., Jang, J. Y., Yu, B. J., and Jin, Y. S. (2015) Lactic acid production from xylose by engineered ''Saccharomyces cerevisiae'' without PDC or ADH deletion. '''Applied Microbiology and Biotechnology''' 99, 8023-8033
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*Tsai, C. S., Kwak, S., Turner, T. L., and Jin, Y. S. (2015) Yeast synthetic biology toolbox and applications for biofuel production. '''FEMS Yeast Research''' 15, 1-15
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*Tsai, C. S., Kong, I. I., Lesmana, A., Million, G., Zhang, G. C., Kim, S. R., and Jin, Y. S. (2015) Rapid and marker-free refactoring of xylose-fermenting yeast strains with Cas9/CRISPR. '''Biotechnology and Bioengineering''' 112, 2406-2411
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*Quarterman, J., Kim, S. R., Kim, P. J., and Jin, Y. S. (2015) Enhanced hexose fermentation by ''Saccharomyces cerevisiae'' through integration of stoichiometric modeling and genetic screening. '''Journal of Biotechnology''' 194, 48-57
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*Liao, C., Seo, S. O., Celik, V., Liu, H., Kong, W., Wang, Y., Blaschek, H., Jin, Y. S., and Lu, T. (2015) Integrated, systems metabolic picture of acetone-butanol-ethanol fermentation by ''Clostridium acetobutylicum''. '''Proceedings of the National Academy of Sciences of the United States of America''' 112, 8505-8510
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*Li, X., Yu, V. Y., Lin, Y., Chomvong, K., Estrela, R., Park, A., Liang, J. M., Znameroski, E. A., Feehan, J., Kim, S. R., Jin, Y. S., Louise Glass, N., and Cate, J. H. D. (2015) Expanding xylose metabolism in yeast for plant cell wall conversion to biofuels. '''eLife''' 4, 1-55
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*Lewis, Z. T., Totten, S. M., Smilowitz, J. T., Popovic, M., Parker, E., Lemay, D. G., Van Tassell, M. L., Miller, M. J., Jin, Y. S., German, J. B., Lebrilla, C. B., and Mills, D. A. (2015) Maternal fucosyltransferase 2 status affects the gut bifidobacterial communities of breastfed infants. '''Microbiome''' 3, 13
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*Lane, S., Zhang, S., Wei, N., Rao, C., and Jin, Y. S. (2015) Development and physiological characterization of cellobiose-consuming ''Yarrowia lipolytica''. '''Biotechnology and Bioengineering''' 112, 1012-1022
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*Kim, S. R., Xu, H., Lesmana, A., Kuzmanovic, U., Au, M., Florencia, C., Oh, E. J., Zhang, G., Kim, K. H., and Jin, Y. S. (2015) Deletion of ''PHO13'', encoding haloacid dehalogenase type IIA phosphatase, results in upregulation of the pentose phosphate pathway in ''Saccharomyces cerevisiae''. '''Applied and Environmental Microbiology''' 81, 1601-1609
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*Kim, S. M., Guo, J., Kwak, S., Jin, Y. S., Lee, D. K., and Singh, V. (2015) Effects of genetic variation and growing condition of prairie cordgrass on feedstock composition and ethanol yield. '''Bioresource Technology''' 183, 70-77
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*Kim, S. K., Jin, Y. S., Choi, I. G., Park, Y. C., and Seo, J. H. (2015) Enhanced tolerance of ''Saccharomyces cerevisiae'' to multiple lignocellulose-derived inhibitors through modulation of spermidine contents. '''Metabolic Engineering''' 29, 46-55
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*Kim, S., Sung, J., Foo, M., Jin, Y. S., and Kim, P. J. (2015) Uncovering the nutritional landscape of food. '''PLoS ONE''' 10
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*Kim, J. W., Seo, S. O., Zhang, G. C., Jin, Y. S., and Seo, J. H. (2015) Expression of Lactococcus lactis NADH oxidase increases 2,3-butanediol production in Pdc-deficient ''Saccharomyces cerevisiae''. '''Bioresource Technology''' 191, 512-519
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===2014===
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*Zhang, G. C., Kong, I. I., Kim, H., Liu, J. J., Cate, J. H. D., and Jin, Y. S. (2014) Construction of a quadruple auxotrophic mutant of an industrial polyploid ''Saccharomyces cerevisiae'' strain by using RNA-guided Cas9 nuclease. '''Applied and Environmental Microbiology''' 80, 7694-7701
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*Nan, H., Seo, S. O., Oh, E. J., Seo, J. H., Cate, J. H. D., and Jin, Y. S. (2014) 2,3-Butanediol production from cellobiose by engineered ''Saccharomyces cerevisiae''. '''Applied Microbiology and Biotechnology''' 98, 5757-5764
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*Lin, Y., Chomvong, K., Acosta-Sampson, L., Estrela, R., Galazka, J. M., Kim, S. R., Jin, Y. S., and Cate, J. H. (2014) Leveraging transcription factors to speed cellobiose fermentation by ''Saccharomyces cerevisiae''. '''Biotechnology for Biofuels''' 7
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*Kim, T. Y., Oh, E. J., Jin, Y. S., and Oh, M. K. (2014) Improved resistance against oxidative stress of engineered cellobiose-fermenting ''Saccharomyces cerevisiae'' revealed by metabolite profiling. '''Biotechnology and Bioprocess Engineering''' 19, 951-957
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*Kim, S. R., and Jin, Y. S. (2014) Metabolic engineering of ''Saccharomyces cerevisiae'' for redox balance of xylose fermentation. '''Current Research on Agriculture and Life Sciences''' 32, 199-202
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*Kim, S. J., Seo, S. O., Park, Y. C., Jin, Y. S., and Seo, J. H. (2014) Production of 2,3-butanediol from xylose by engineered Saccharomyces cerevisiae. '''Journal of Biotechnology''' 192, 376-382
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*Kim, H., Lee, W. H., Galazka, J. M., Cate, J. H. D., and Jin, Y. S. (2014) Analysis of cellodextrin transporters from Neurospora crassa in ''Saccharomyces cerevisiae'' for cellobiose fermentation. '''Applied Microbiology and Biotechnology''' 98, 1087-1094
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*Chomvong, K., Kordić, V., Li, X., Bauer, S., Gillespie, A. E., Ha, S. J., Oh, E. J., Galazka, J. M., Jin, Y. S., and Cate, J. H. D. (2014) Overcoming inefficient cellobiose fermentation by cellobiose phosphorylase in the presence of xylose. '''Biotechnology for Biofuels''' 7
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*Bae, Y. H., Kang, K. H., Jin, Y. S., and Seo, J. H. (2014) Molecular cloning and expression of fungal cellobiose transporters and β-glucosidases conferring efficient cellobiose fermentation in ''Saccharomyces cerevisiae''. '''Journal of Biotechnology''' 169, 34-41
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===2013===
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* Wei, N., Xu, H., Kim, S. R., and Jin, Y. S. (2013) Deletion of ''FPS1'', encoding aquaglyceroporin Fps1p, improves xylose fermentation by engineered ''Saccharomyces cerevisiae''. '''Applied and Environmental Microbiology''' 79, 3193-3201
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* Wei, N., Quarterman, J., Kim, S. R., Cate, J. H. D., and Jin, Y. S. (2013) Enhanced biofuel production through coupled acetic acid and xylose consumption by engineered yeast. '''Nature Communications''' 4 [http://www.nature.com/ncomms/2013/131008/ncomms3580/full/ncomms3580.html Link], [http://www.natureasia.com/en/research/highlight/8801 News Release from Natureasia], [http://news.illinois.edu/news/13/1008biofuels_Yong-SuJin.html Inside Illinois], [http://www.bbc.co.uk/news/science-environment-24489800 BBC News]
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* Wei, N., Quarterman, J., and Jin, Y. S. (2013) Marine macroalgae: An untapped resource for producing fuels and chemicals. '''Trends in Biotechnology''' 31, 70-77
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* Wang, Y., Li, X., Milne, C. B., Janssen, H., Lin, W., Phan, G., Hu, H., Jin, Y. S., Price, N. D., and Blascheka, H. P. (2013) Development of a gene knockout system using mobile group II introns (Targetron) and genetic disruption of acid production pathways in ''Clostridium beijerinckii''. '''Applied and Environmental Microbiology''' 79, 5853-5863
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*Oh, E. J., Ha, S. J., Rin Kim, S., Lee, W. H., Galazka, J. M., Cate, J. H. D., and Jin, Y. S. (2013) Enhanced xylitol production through simultaneous co-utilization of cellobiose and xylose by engineered ''Saccharomyces cerevisiae''. '''Metabolic Engineering''' 15, 226-234
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*Li, S., Ha, S. J., Kim, H. J., Galazka, J. M., Cate, J. H. D., Jin, Y. S., and Zhao, H. (2013) Investigation of the functional role of aldose 1-epimerase in engineered cellobiose utilization. '''Journal of Biotechnology''' 168, 1-6
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*Lee, W. H., Nan, H., Kim, H. J., and Jin, Y. S. (2013) Simultaneous saccharification and fermentation by engineered ''Saccharomyces cerevisiae'' without supplementing extracellular β-glucosidase. '''Journal of Biotechnology''' 167, 316-322
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*Lee, W. H., Kim, M. D., Jin, Y. S., and Seo, J. H. (2013) Engineering of NADPH regenerators in ''Escherichia coli'' for enhanced biotransformation. '''Applied Microbiology and Biotechnology''' 97, 2761-2772
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*Lee, K. S., Kim, J. S., Heo, P., Yang, T. J., Sung, Y. J., Cheon, Y., Koo, H. M., Yu, B. J., Seo, J. H., Jin, Y. S., Park, J. C., and Kweon, D. H. (2013) Characterization of ''Saccharomyces cerevisiae'' promoters for heterologous gene expression in Kluyveromyces marxianus. '''Applied Microbiology and Biotechnology''' 97, 2029-2041
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*Kim, S. R., Skerker, J. M., Kang, W., Lesmana, A., Wei, N., Arkin, A. P., and Jin, Y. S. (2013) Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in ''Saccharomyces cerevisiae''. '''PLoS ONE''' 8
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*Kim, S. R., Park, Y. C., Jin, Y. S., and Seo, J. H. (2013) Strain engineering of ''Saccharomyces cerevisiae'' for enhanced xylose metabolism. '''Biotechnology Advances''' 31, 851-861
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*Kim, S. R., Lee, K. S., Kong, I. I., Lesmana, A., Lee, W. H., Seo, J. H., Kweon, D. H., and Jin, Y. S. (2013) Construction of an efficient xylose-fermenting diploid ''Saccharomyces cerevisiae'' strain through mating of two engineered haploid strains capable of xylose assimilation. '''Journal of Biotechnology''' 164, 105-111
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*Kim, S. R., Kwee, N. R., Kim, H., and Jin, Y. S. (2013) Feasibility of xylose fermentation by engineered Saccharomyces cerevisiae overexpressing endogenous aldose reductase (''GRE3''), xylitol dehydrogenase (''XYL2''), and xylulokinase (''XYL3'') from Scheffersomyces stipitis. '''FEMS Yeast Research''' 13, 312-321
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*Kim, S. J., Seo, S. O., Jin, Y. S., and Seo, J. H. (2013) Production of 2,3-butanediol by engineered ''Saccharomyces cerevisiae''. '''Bioresource Technology''' 146, 274-281
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*Kim, H. J., Turner, T. L., and Jin, Y. S. (2013) Combinatorial genetic perturbation to refine metabolic circuits for producing biofuels and biochemicals. '''Biotechnology Advances''' 31, 976-985
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*Kim, H. J., Lee, H. R., Kim, C. S., Jin, Y. S., and Seo, J. H. (2013) Investigation of protein expression profiles of erythritol-producing ''Candida magnoliae'' in response to glucose perturbation. '''Enzyme and Microbial Technology''' 53, 174-180
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*Ha, S. J., Kim, S. R., Kim, H., Du, J., Cate, J. H. D., and Jin, Y. S. (2013) Continuous co-fermentation of cellobiose and xylose by engineered ''Saccharomyces cerevisiae''. '''Bioresource Technology''' 149, 525-531
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 +
*Ha, S. J., Kim, H., Lin, Y., Jang, M. U., Galazka, J. M., Kim, T. J., Cate, J. H. D., and Jin, Y. S. (2013) Single amino acid substitutions in ''HXT2.4'' from ''Scheffersomyces stipitis'' lead to improved cellobiose fermentation by engineered ''Saccharomyces cerevisiae''. '''Applied and Environmental Microbiology''' 79, 1500-1507
 +
 
 +
*Ha, S. J., Galazka, J. M., Joong Oh, E., Kordić, V., Kim, H., Jin, Y. S., and Cate, J. H. D. (2013) Energetic benefits and rapid cellobiose fermentation by ''Saccharomyces cerevisiae'' expressing cellobiose phosphorylase and mutant cellodextrin transporters. '''Metabolic Engineering''' 15, 134-143
 +
 
 +
*Guo, B., Zhang, Y., Yu, G., Lee, W. H., Jin, Y. S., and Morgenroth, E. (2013) Two-stage acidic-alkaline hydrothermal pretreatment of lignocellulose for the high recovery of cellulose and hemicellulose sugars. '''Applied Biochemistry and Biotechnology''' 169, 1069-1087
 +
 
 +
===2012===
 +
 
 +
*Lee, W. H., Seo, S. O., Bae, Y. H., Nan, H., Jin, Y. S., and Seo, J. H. (2012) Isobutanol production in engineered ''Saccharomyces cerevisiae'' by overexpression of 2-ketoisovalerate decarboxylase and valine biosynthetic enzymes. '''Bioprocess and Biosystems Engineering''' 35, 1467-1475
 +
 
 +
*Lee, W. H., Pathanibul, P., Quarterman, J., Jo, J. H., Han, N. S., Miller, M. J., Jin, Y. S., and Seo, J. H. (2012) Whole cell biosynthesis of a functional oligosaccharide, 2'-fucosyllactose, using engineered ''Escherichia coli''. '''Microbial Cell Factories''' 11, 48
 +
 
 +
*Kim, S. R., Ha, S. J., Wei, N., Oh, E. J., and Jin, Y. S. (2012) Simultaneous co-fermentation of mixed sugars: A promising strategy for producing cellulosic ethanol. '''Trends in Biotechnology''' 30, 274-282
 +
 
 +
*Kim, S. R., Ha, S. J., Kong, I. I., and Jin, Y. S. (2012) High expression of ''XYL2'' coding for xylitol dehydrogenase is necessary for efficient xylose fermentation by engineered ''Saccharomyces cerevisiae''. '''Metabolic Engineering''' 14, 336-343
 +
 
 +
*Jin, Y. S., and Cate, J. H. D. (2012) Model-guided strain improvement: Simultaneous hydrolysis and co-fermentation of cellulosic sugars. '''Biotechnology Journal''' 7, 328-329
 +
 
 +
*Guo, B., Zhang, Y., Ha, S. J., Jin, Y. S., and Morgenroth, E. (2012) Combined biomimetic and inorganic acids hydrolysis of hemicellulose in Miscanthus for bioethanol production. '''Bioresource Technology''' 110, 278-287
 +
 
 +
*Cha, C., Kim, S. R., Jin, Y. S., and Kong, H. (2012) Tuning structural durability of yeast-encapsulating alginate gel beads with interpenetrating networks for sustained bioethanol production. '''Biotechnology and Bioengineering''' 109, 63-73
 +
 
 +
*Milne, C. B., Eddy, J. A., Raju, R., Ardekani, S., Kim, P. J., Senger, R. S., Jin, Y. S., Blaschek, H. P., and Price, N. D. (2011) Metabolic network reconstruction and genome-scale model of butanol-producing strain ''Clostridium beijerinckii'' NCIMB 8052. '''BMC Systems Biology''' 5
 +
 
 +
===2011===
 +
 
 +
*Lu, C. H., Choi, J. H., Engelmann Moran, N., Jin, Y. S., and Erdman, J. W. (2011) Laboratory-scale production of 13C-labeled lycopene and phytoene by bioengineered ''Escherichia coli''. '''Journal of Agricultural and Food Chemistry''' 59, 9996-10005
 +
 
 +
*Lee, K. S., Hong, M. E., Jung, S. C., Ha, S. J., Yu, B. J., Koo, H. M., Park, S. M., Seo, J. H., Kweon, D. H., Park, J. C., and Jin, Y. S. (2011) Improved galactose fermentation of ''Saccharomyces cerevisiae'' through inverse metabolic engineering. '''Biotechnology and Bioengineering''' 108, 621-631
 +
 
 +
*Kim, J. S., Heo, P., Yang, T. J., Lee, K. S., Jin, Y. S., Kim, S. K., Shin, D., and Kweon, D. H. (2011) Bacterial persisters tolerate antibiotics by not producing hydroxyl radicals. '''Biochemical and Biophysical Research Communications''' 413, 105-110
 +
 
 +
*Ha, S. J., Wei, Q., Kim, S. R., Galazka, J. M., Cate, J., and Jin, Y. S. (2011) Cofermentation of cellobiose and galactose by an engineered ''Saccharomyces cerevisiae'' Strain. '''Applied and Environmental Microbiology''' 77, 5822-5825 [http://aem.asm.org/cgi/content/abstract/77/16/5822 Link], [http://www.dailycal.org/2011/08/30/team-doubles-efficiency-of-converting-seaweed-into-biofuel/ Related News]
 +
 
 +
*Ha, S. J., Kim, S. R., Choi, J. H., Park, M. S., and Jin, Y. S. (2011) Xylitol does not inhibit xylose fermentation by engineered Saccharomyces cerevisiae expressing xylA as severely as it inhibits xylose isomerase reaction ''in vitro''. '''Applied Microbiology and Biotechnology''' 92, 77-84
 +
 
 +
*Ha, S. J., Galazka, J. M., Kim, S. R., Choi, J. H., Yang, X., Seo, J. H., Glass, N. L., Cate, J. H. D., and Jin, Y. S. (2011) Engineered ''Saccharomyces cerevisiae'' capable of simultaneous cellobiose and xylose fermentation. '''Proceedings of the National Academy of Sciences of the United States of America''' 108, 516-521 [http://www.pnas.org/content/108/2/504.abstract Link],[http://www.pnas.org/content/108/2/435.full In This Issue-PNAS], [http://www.physorg.com/news/2010-12-scientists-major-obstacles-cellulosic-biofuel.html Related News]
===2010===
===2010===
-
*Kim, S.R., Lee, K.S., Choi, J.H., Ha, S.J., Kweon, D.H., Seo, J.H. & Jin, Y.S. Repeated-batch fermentations of xylose and glucose-xylose mixtures using a respiration-deficient ''Saccharomyces cerevisiae'' engineered for xylose metabolism. J Biotechnol 150, 404-407 (2010). [http://dx.doi.org/10.1016/j.jbiotec.2010.09.962 Link]
+
*Kim, S. R., Lee, K. S., Choi, J. H., Ha, S. J., Kweon, D. H., Seo, J. H., and Jin, Y. S. (2010) Repeated-batch fermentations of xylose and glucose-xylose mixtures using a respiration-deficient ''Saccharomyces cerevisiae'' engineered for xylose metabolism. '''Journal of Biotechnology''' 150, 404-407
-
* Jung, S.C., Smith, C.L., Lee, K.S., Hong, M.E., Kweon, D.H., Stephanopoulos, G. & Jin, Y.S. Restoration of growth phenotypes of ''Escherichia coli'' DH5alpha in minimal media through reversal of a point mutation in ''purB''. Appl Environ Microbiol 76, 6307-6309 (2010). [http://dx.doi.org/10.1128/AEM.01210-10 Link], [http://www.sciencedaily.com/releases/2010/11/101111160547.htm Related News1], [http://www.biotechniques.com/news/The-key-to-the-meaning-of-life-Harder-better-faster-stronger-E.-coli/biotechniques-307403.html Related News2]
+
 
-
* Hong, M.E., Lee, K.S., Yu, B.J., Sung, Y.J., Park, S.M., Koo, H.M., Kweon, D.H., Park, J.C. & Jin, Y.S. Identification of gene targets eliciting improved alcohol tolerance in ''Saccharomyces cerevisiae'' through inverse metabolic engineering. J Biotechnol 149, 52-59 (2010). [http://dx.doi.org/10.1016/j.jbiotec.2010.06.006 Link], [http://www.sciencedaily.com/releases/2010/08/100819112220.htm Related News]
+
*Jung, S. C., Smith, C. L., Lee, K. S., Hong, M. E., Kweon, D. H., Stephanopoulos, G., and Jin, Y. S. (2010) Restoration of growth phenotypes of ''Escherichia coli'' DH5α in minimal media through reversal of a point mutation in ''purB''. '''Applied and Environmental Microbiology''' 76, 6307-6309 [http://www.sciencedaily.com/releases/2010/11/101111160547.htm Related News1], [http://www.biotechniques.com/news/The-key-to-the-meaning-of-life-Harder-better-faster-stronger-E.-coli/biotechniques-307403.html Related News2]
 +
 
 +
*Hong, M. E., Lee, K. S., Yu, B. J., Sung, Y. J., Park, S. M., Koo, H. M., Kweon, D. H., Park, J. C., and Jin, Y. S. (2010) Identification of gene targets eliciting improved alcohol tolerance in ''Saccharomyces cerevisiae'' through inverse metabolic engineering. '''Journal of Biotechnology''' 149, 52-59 [http://www.sciencedaily.com/releases/2010/08/100819112220.htm Related News]
===2009===
===2009===
-
* Tyo, K.E., Jin, Y.S., Espinoza, F.A. & Stephanopoulos, G. Identification of gene disruptions for increased poly-3-hydroxybutyrate accumulation in ''Synechocystis'' PCC 6803. Biotechnol Prog 25, 1236-1243 (2009). [http://dx.doi.org/10.1002/btpr.228 Link]
+
*Tyo, K. E. J., Espinoza, F. A., Stephanopoulos, G., and Jin, Y. S. (2009) Identification of gene disruptions for increased poly-3-hydroxybutyrate accumulation in ''Synechocystis'' PCC 6803. '''Biotechnology Progress''' 25, 1236-1243
-
* Shin, J.Y., Shin, J.I., Kim, J.S., Yang, Y.S., Hwang, Y., Yang, J.S., Shin, D., Seo, J.H., Jin, Y.S., Park, Y.C., Hwang, J.S. & Kweon, D.H. Assembly of Coenzyme Q10 nanostructure resembling nascent discoidal high density lipoprotein particle. Biochem Biophys Res Commun 388, 217-221 (2009).
+
 
-
* Lee, K., Shin, J.Y., Yang, Y.S., Shin, J.I., Park, Y.C., Seo, J.H., Park, T.H., Shin, C.S., Jin, Y.S. & Kweon, D.H. Towards a microarray of functional membrane proteins: Assembly of a surface-attachable, membrane-protein-anchored membrane structure using apolipoprotein A-1. Enz. Microb Tech 44, 217-222 (2009).
+
*Shin, J. Y., Shin, J. I., Kim, J. S., Yang, Y. S., Hwang, Y., Yang, J. S., Shin, D., Seo, J. H., Jin, Y. S., Park, Y. C., Hwang, J. S., and Kweon, D. H. (2009) Assembly of Coenzyme Q10 nanostructure resembling nascent discoidal high density lipoprotein particle. '''Biochemical and Biophysical Research Communications''' 388, 217-221
-
* Lee, J., Seo, E., Kweon, D.H., Park, K. & Jin, Y.S. Fermentation of rice bran and defatted rice rran for butanol production using Clostridium beijerinckii NCIMB 8052. J. Microbiol. Biotechnol. 19, 482-490 (2009).
+
 
 +
*Lee, K., Shin, J. Y., Yang, Y. S., Shin, J. I., Park, Y. C., Seo, J. H., Park, T. H., Shin, C. S., Jin, Y. S., and Kweon, D. H. (2009) Towards a microarray of functional membrane proteins: Assembly of a surface-attachable, membrane-protein-anchored membrane structure using apolipoprotein A-1. '''Enzyme and Microbial Technology''' 44, 217-222
 +
 
 +
*Lee, J., Seo, E., Kweon, D. H., Park, K., and Jin, Y. S. (2009) Fermentation of rice bran and defatted rice bran for butanol production using ''Clostridium beijerinckii'' NCIMB 8052. '''Journal of Microbiology and Biotechnology''' 19, 482-490
===2008===
===2008===
-
* Lee, K.S., Chang, E.H., Shin, J.Y., Kweon, D.H., Park, K.M. & Jin, Y.S. Production of casein phosphopeptides using Streptococcus faecalis var. liquefaciens cell immobilization. Korean J Biotechnol Bioeng 23, 59-64 (2008).
+
*Lee, K. S., Shin, J. Y., Jang, Y. H., Kweon, D. H., Park, K. M., and Jin, Y. S. (2008) Production of casein phosphopeptides using ''Streptococcus faecalis var. liquefaciens'' cell immobilization. '''KSBB Journal''' 23, 59-64
-
* Jung, C.H., Yang, Y.S., Kim, J.S., Shin, J.I., Jin, Y.S., Shin, J.Y., Lee, J.H., Chung, K.M., Hwang, J.S., Oh, J.M., Shin, Y.K. & Kweon, D.H. A search for synthetic peptides that inhibit soluble N-ethylmaleimide sensitive-factor attachment receptor-mediated membrane fusion. FEBS J 275, 3051-3063 (2008).
+
 
-
===2006-2007===
+
*Jung, C. H., Yang, Y. S., Kim, J. S., Shin, J. I., Jin, Y. S., Shin, J. Y., Lee, J. H., Chung, K. M., Hwang, J. S., Oh, J. M., Shin, Y. K., and Kweon, D. H. (2008) A search for synthetic peptides that inhibit soluble N-ethylmaleimide sensitive-factor attachment receptor-mediated membrane fusion. '''FEBS Journal''' 275, 3051-3063
-
* Jung, S.C., Chung, C.Y., Kim, J.S., Kweon, D.H., Park, K.M. & Jin, Y.S. Policosanol production from rice bran oil byproducts. Food Eng Prog 11, 293-297 (2007).
+
 
-
* Jin, Y.S. & Stephanopoulos, G. Multi-dimensional gene target search for improving lycopene biosynthesis in Escherichia coli. Metab Eng 9, 337-347 (2007).
+
===2007 and before===
-
* Jeffries, T.W., Grigoriev, I.V., Grimwood, J., Laplaza, J.M., Aerts, A., Salamov, A., Schmutz, J., Lindquist, E., Dehal, P., Shapiro, H., Jin, Y.S., Passoth, V. & Richardson, P.M. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Nat Biotechnol 25, 319-326 (2007).
+
*Jung, S. C., Chung, C. Y., Kim, J. S., Kweon, D. H., Park, K. M., and Jin, Y. S. (2007) Policosanol production from rice bran oil byproducts. '''Food Engineering Progress''' 11, 337-347
-
* Laplaza, J.M., Torres, B.R., Jin, Y.S. & Jeffries, T.W. Sh ble and Cre adapted for functional genomics and metabolic engineering of Pichia stipitis. Enz Microb Tech 38, 741-747 (2006).
+
 
-
* Jin, Y.S., Cruz, J. & Jeffries, T.W. Xylitol production by a Pichia stipitis D-xylulokinase mutant. Appl Microbiol Biotechnol 68, 42-45 (2005).
+
*Jin, Y. S., and Stephanopoulos, G. (2007) Multi-dimensional gene target search for improving lycopene biosynthesis in ''Escherichia coli''. '''Metabolic Engineering''' 9, 337-347
-
* Jin, Y.S., Alper, H., Yang, Y.T. & Stephanopoulos, G. Improvement of xylose uptake and ethanol production in recombinant Saccharomyces cerevisiae through an inverse metabolic engineering approach. Appl Environ Microbiol 71, 8249-8256 (2005).
+
 
-
* Alper, H., Jin, Y.S., Moxley, J.F. & Stephanopoulos, G. Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli. Metab Eng 7, 155-164 (2005).
+
*Jeffries, T. W., Grigoriev, I. V., Grimwood, J., Laplaza, J. M., Aerts, A., Salamov, A., Schmutz, J., Lindquist, E., Dehal, P., Shapiro, H., Jin, Y. S., Passoth, V., and Richardson, P. M. (2007) Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast ''Pichia stipitis''. '''Nature Biotechnology''' 25, 319-326
-
* Jin, Y.S., Laplaza, J.M. & Jeffries, T.W. Saccharomyces cerevisiae engineered for xylose metabolism exhibits a respiratory response. Appl Environ Microbiol 70, 6816-6825 (2004).
+
 
-
* Jin, Y.S. & Jeffries, T.W. Stoichiometric network constraints on xylose metabolism by recombinant Saccharomyces cerevisiae. Metab Eng 6, 229-238 (2004).
+
*Laplaza, J. M., Torres, B. R., Jin, Y. S., and Jeffries, T. W. (2006) Sh ble and Cre adapted for functional genomics and metabolic engineering of ''Pichia stipitis''. '''Enzyme and Microbial Technology''' 38, 741-747
-
* Jeffries, T.W. & Jin, Y.S. Metabolic engineering for improved fermentation of pentoses by yeasts. Appl Microbiol Biotechnol 63, 495-509 (2004).
+
 
-
* Jin, Y.S., Ni, H., Laplaza, J.M. & Jeffries, T.W. Optimal growth and ethanol production from xylose by recombinant Saccharomyces cerevisiae require moderate D-xylulokinase activity. Appl Environ Microbiol 69, 495-503 (2003).
+
*Kim, J. S., Lee, K. W., Jin, Y. S., Yoo, S. J., Jung, K. Y., Lee, J. W., Lee, S. Y., and Hwang, D. H. (2006) Standardization on metabolic and biological pathway. '''Bioinformatics and Biosystems''' 1, 196-200
-
* Jin, Y.S. & Jeffries, T.W. Changing flux of xylose metabolites by altering expression of xylose reductase and xylitol dehydrogenase in recombinant Saccharomyces cerevisiae. Appl Biochem Biotechnol 105 -108, 277-286 (2003).
+
 
-
* Jin, Y.S., Jones, S., Shi, N.Q. & Jeffries, T.W. Molecular cloning of XYL3 (D-xylulokinase) from Pichia stipitis and characterization of its physiological function. Appl Environ Microbiol 68, 1232-1239 (2002).
+
*Jin, Y. S., Cruz, J., and Jeffries, T. W. (2005) Xylitol production by a ''Pichia stipitis'' D-xylulokinase mutant. '''Applied Microbiology and Biotechnology''' 68, 42-45
-
* Jin, Y.S., Lee, T.H., Choi, Y.D., Ryu, Y.W. & Seo, J.H. Conversion of xylose to ethanol by recombinant Saccharomyces cerevisiae containing genes for xylose reductase and xylitol dehydrogenase from Pichia stipitis. J Microbiol Biotechnol 10, 564-567 (2000).
+
 
-
* Jeffries, T.W. & Jin, Y.S. Ethanol and thermotolerance in the bioconversion of xylose by yeasts. Adv Appl Microbiol 47, 221-268 (2000).
+
*Jin, Y. S., Alper, H., Yang, Y. T., and Stephanopoulos, G. (2005) Improvement of xylose uptake and ethanol production in recombinant ''Saccharomyces cerevisiae'' through an inverse metabolic engineering approach. ''Applied and Environmental Microbiology'' 71, 8249-8256
 +
 
 +
*Alper, H., Jin, Y. S., Moxley, J. F., and Stephanopoulos, G. (2005) Identifying gene targets for the metabolic engineering of lycopene biosynthesis in ''Escherichia coli''. '''Metabolic Engineering''' 7, 155-164
 +
 
 +
*Jin, Y. S., Laplaza, J. M., and Jeffries, T. W. (2004) ''Saccharomyces cerevisiae'' engineered for xylose metabolism exhibits a respiratory response. '''Applied and Environmental Microbiology''' 70, 6816-6825
 +
 
 +
*Jin, Y. S., and Jeffries, T. W. (2004) Stoichiometric network constraints on xylose metabolism by recombinant ''Saccharomyces cerevisiae''. '''Metabolic Engineering''' 6, 229-238
 +
 
 +
*Jeffries, T. W., and Jin, Y. S. (2004) Metabolic engineering for improved fermentation of pentoses by yeasts. '''Applied Microbiology and Biotechnology''' 63, 495-509
 +
 
 +
*Jin, Y. S., Ni, H., Laplaza, J. M., and Jeffries, T. W. (2003) Optimal growth and ethanol production from xylose by recombinant ''Saccharomyces cerevisiae'' require moderate D-xylulokinase activity. '''Applied and Environmental Microbiology''' 69, 495-503
 +
 
 +
*Jin, Y. S., and Jeffries, T. W. (2003) Changing flux of xylose metabolites by altering expression of xylose reductase and xylitol dehydrogenase in recombinant ''Saccharomyces cerevisiae''. '''Applied Biochemistry and Biotechnology''' 106, 277-286
 +
 
 +
*Jin, Y. S., Jones, S., Shi, N. Q., and Jeffries, T. W. (2002) Molecular cloning of ''XYL3'' (D-xylulokinase) from ''Pichia stipitis'' and characterization of its physiological function. '''Applied and Environmental Microbiology''' 68, 1232-1239
 +
 
 +
*Jin, Y. S., Lee, T. H., Choi, Y. D., Ryu, Y. W., and Seo, J. H. (2000) Conversion of xylose to ethanol by recombinant ''Saccharomyces cerevisiae'' containing genes for xylose reductase and xylitol dehydrogenase from ''Pichia stipitis''. '''Journal of Microbiology and Biotechnology''' 10, 564-567
 +
 
 +
*Jeffries, T. W., and Jin, Y. S. (2000) Ethanol and thermotolerance in the bioconversion of xylose by yeasts. '''Advances in Applied Microbiology''' 47, 221-268

Current revision

Molecular and Systems Biotechnology Lab @ UIUC

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Contents

2016

  • Turner, T. L., Kim, H., Kong, II, Liu, J. J., Zhang, G. C., and Jin, Y. S. (2016) Engineering and evolution of Saccharomyces cerevisiae to produce biofuels and chemicals. Advances in Biochemical Engineering/Biotechnology, in press
  • Lee, Y. J., Jin, Y. S., Cha, Y. L., and Seo, J. H. (2016) Bioethanol production from cellulosic hydrolysates by engineered industrial Saccharomyces cerevisiae. Bioresource Technology, in press
  • Kim, J. W., Kim, J., Seo, S. O., Kim, K. H., Jin, Y. S., and Seo, J. H. (2016) Enhanced production of 2,3-butanediol by engineered Saccharomyces cerevisiae through fine-tuning of pyruvate decarboxylase and NADH oxidase activities. Biotechnology for Biofuels, in press
  • Turner, T.L., Kim, E., Hwang, C., Zhang, G.C., Liu, J.J., Jin, Y.S. (2016) Short communication: Conversion of lactose and whey into lactic acid by engineered yeast. Journal of Dairy Science, in press
  • Xia, P. F., Zhang, G. C., Walker, B., Seo, S. O., Kwak, S., Liu, J., Kim, H., Ort, D., Wang, S. G., and Jin, Y. S. (2016) Recycling carbon dioxide during xylose fermentation by engineered Saccharomyces cerevisiae. ACS Synthetic Biology, in press
  • Park, J., Wang, Z., Lee, W.-H., Jameel, H., Jin, Y.-S., and Park, S. (2016) Effect of the two-stage autohydrolysis of hardwood on the enzymatic saccharification and subsequent fermentation with an efficient xylose-utilizing Saccharomyces cerevisiae. BioResources 11, 9584-9595
  • Choi, E. J., Kim, J. W., Kim, S. J., Seo, S. O., Lane, S., Park, Y. C., Jin, Y. S., and Seo, J. H. (2016) Enhanced production of 2,3-butanediol in pyruvate decarboxylase-deficient Saccharomyces cerevisiae through optimizing ratio of glucose/galactose. Biotechnology Journal, in press
  • Liu, J. J., Zhang, G. C., Oh, E. J., Pathanibul, P., Turner, T. L., and Jin, Y. S. (2016) Lactose fermentation by engineered Saccharomyces cerevisiae capable of fermenting cellobiose. Journal of Biotechnology 234, 99-104
  • Seo, S. O., Wang, Y., Lu, T., Jin, Y. S., and Blaschek, H. P. (2016) Characterization of a Clostridium beijerinckii spo0A mutant and its application for butyl butyrate production. Biotechnology and Bioengineering, in press
  • Zhang, G. C., Kong, II, Wei, N., Peng, D., Turner, T. L., Sung, B. H., Sohn, J. H., and Jin, Y. S. (2016) Optimization of an acetate reduction pathway for producing cellulosic ethanol by engineered yeast. Biotechnology and Bioengineering, in press
  • Wang, Y., Zhang, Z. T., Seo, S. O., Lynn, P., Lu, T., Jin, Y. S., and Blaschek, H. (2016) Gene transcription repression in Clostridium beijerinckii using CRISPR-dCas9. Biotechnology and Bioengineering, in press
  • Bode, L., Contractor, N., Barile, D., Pohl, P., Prudden, A., Boons, G.-J., Jin, Y. S., and Jennewein, S. (2016) Human Milk Oligosaccharides: Challenges and opportunities Nutrition Reviews, in press
  • Quarterman, J., Skerker, J. M., Feng, X., Liu, I. Y., Zhao, H., Arkin, A. P., and Jin, Y. S. (2016) Rapid and efficient galactose fermentation by engineered Saccharomyces cerevisiae. Journal of Biotechnology 229, 13-21
  • Wang, Y., Zhang, Z. T., Seo, S. O., Lynn, P., Lu, T., Jin, Y. S., and Blaschek, H. P. (2016) Bacterial genome editing with CRISPR-Cas9: deletion, integration, single nucleotide modification, and desirable "clean" mutant selection in Clostridium beijerinckii as an example. ACS Synthetic Biology 15, 721-732
  • Oh, E. J., Skerker, J. M., Kim, S. R., Wei, N., Turner, T. L., Maurer, M. J., Arkin, A. P., and Jin, Y. S. (2016) Gene amplification on demand accelerates cellobiose utilization in engineered Saccharomyces cerevisiae. Applied and Environmental Microbiology 82, 3631-3639
  • Xu, H., Kim, S., Sorek, H., Lee, Y., Jeong, D., Kim, J., Oh, E. J., Yun, E. J., Wemmer, D. E., Kim, K. H., Kim, S. R., and Jin, Y. S. (2016) PHO13 deletion-induced transcriptional activation prevents sedoheptulose accumulation during xylose metabolism in engineered Saccharomyces cerevisiae. Metabolic Engineering 34, 88-96
  • Xia, P. F., Zhang, G. C., Liu, J. J., Kwak, S., Tsai, C. S., Kong, II, Sung, B. H., Sohn, J. H., Wang, S. G., and Jin, Y. S. (2016) GroE chaperonins assisted functional expression of bacterial enzymes in Saccharomyces cerevisiae. Biotechnology and Bioengineering 113, 2149-2155
  • Seo, J. H., and Jin, Y. S. (2016) Editorial overview: Food biotechnology: Critical gap filler in the nexus of food, energy, and waste for a prosperous future. Current Opinion in Biotechnology 37, 4-7
  • Park, Y. C., Oh, E. J., Jo, J. H., Jin, Y. S., and Seo, J. H. (2016) Recent advances in biological production of sugar alcohols. Current Opinion in Biotechnology 37, 105-113
  • Liu, J. J., Kong, II, Zhang, G. C., Jayakody, L. N., Kim, H., Xia, P. F., Kwak, S., Sung, B. H., Sohn, J. H., Walukiewicz, H. E., Rao, C. V., and Jin, Y. S. (2016) Metabolic engineering of probiotic Saccharomyces boulardii. Applied and Environmental Microbiology 82, 2280-2287
  • Li, X., Park, A., Estrela, R., Kim, S. R., Jin, Y. S., and Cate, J. H. D. (2016) Comparison of xylose fermentation by two high-performance engineered strains of Saccharomyces cerevisiae. Biotechnology Reports 9, 53-56
  • Kim, J. S., Cho, D. H., Heo, P., Jung, S. C., Park, M., Oh, E. J., Sung, J., Kim, P. J., Lee, S. C., Lee, D. H., Lee, S., Lee, C. H., Shin, D., Jin, Y. S., and Kweon, D. H. (2016) Fumarate-mediated persistence of Escherichia coli against antibiotics. Antimicrobial Agents and Chemotherapy 60, 2232-2240
  • Jayakody, L. N., Lane, S., Kim, H., and Jin, Y. S. (2016) Mitigating health risks associated with alcoholic beverages through metabolic engineering. Current Opinion in Biotechnology 37, 173-181

2015

  • Zhang, G. C., Liu, J. J., Kong, I. I., Kwak, S., and Jin, Y. S. (2015) Combining C6 and C5 sugar metabolism for enhancing microbial bioconversion. Current Opinion in Chemical Biology 29, 49-57
  • Yun, E. J., Kwak, S., Kim, S. R., Park, Y. C., Jin, Y. S., and Kim, K. H. (2015) Production of (S)-3-hydroxybutyrate by metabolically engineered Saccharomyces cerevisiae. Journal of Biotechnology 209, 23-30
  • Wei, N., Oh, E. J., Million, G., Cate, J. H. D., and Jin, Y. S. (2015) Simultaneous utilization of cellobiose, xylose, and acetic acid from lignocellulosic biomass for biofuel production by an engineered yeast platform. ACS Synthetic Biology 4, 707-713
  • Wang, Y., Zhang, Z. T., Seo, S. O., Choi, K., Lu, T., Jin, Y. S., and Blaschek, H. P. (2015) Markerless chromosomal gene deletion in Clostridium beijerinckii using CRISPR/Cas9 system. Journal of Biotechnology 200, 1-5
  • Turner, T. L., Zhang, G. C., Oh, E. J., Subramaniam, V., Adiputra, A., Subramaniam, V., Skory, C. D., Jang, J. Y., Yu, B. J., Park, I., and Jin, Y. S. (2015) Lactic acid production from cellobiose and xylose by engineered Saccharomyces cerevisiae. Biotechnology and Bioengineering 113, 1075-1083
  • Turner, T. L., Zhang, G. C., Kim, S. R., Subramaniam, V., Steffen, D., Skory, C. D., Jang, J. Y., Yu, B. J., and Jin, Y. S. (2015) Lactic acid production from xylose by engineered Saccharomyces cerevisiae without PDC or ADH deletion. Applied Microbiology and Biotechnology 99, 8023-8033
  • Tsai, C. S., Kwak, S., Turner, T. L., and Jin, Y. S. (2015) Yeast synthetic biology toolbox and applications for biofuel production. FEMS Yeast Research 15, 1-15
  • Tsai, C. S., Kong, I. I., Lesmana, A., Million, G., Zhang, G. C., Kim, S. R., and Jin, Y. S. (2015) Rapid and marker-free refactoring of xylose-fermenting yeast strains with Cas9/CRISPR. Biotechnology and Bioengineering 112, 2406-2411
  • Quarterman, J., Kim, S. R., Kim, P. J., and Jin, Y. S. (2015) Enhanced hexose fermentation by Saccharomyces cerevisiae through integration of stoichiometric modeling and genetic screening. Journal of Biotechnology 194, 48-57
  • Liao, C., Seo, S. O., Celik, V., Liu, H., Kong, W., Wang, Y., Blaschek, H., Jin, Y. S., and Lu, T. (2015) Integrated, systems metabolic picture of acetone-butanol-ethanol fermentation by Clostridium acetobutylicum. Proceedings of the National Academy of Sciences of the United States of America 112, 8505-8510
  • Li, X., Yu, V. Y., Lin, Y., Chomvong, K., Estrela, R., Park, A., Liang, J. M., Znameroski, E. A., Feehan, J., Kim, S. R., Jin, Y. S., Louise Glass, N., and Cate, J. H. D. (2015) Expanding xylose metabolism in yeast for plant cell wall conversion to biofuels. eLife 4, 1-55
  • Lewis, Z. T., Totten, S. M., Smilowitz, J. T., Popovic, M., Parker, E., Lemay, D. G., Van Tassell, M. L., Miller, M. J., Jin, Y. S., German, J. B., Lebrilla, C. B., and Mills, D. A. (2015) Maternal fucosyltransferase 2 status affects the gut bifidobacterial communities of breastfed infants. Microbiome 3, 13
  • Lane, S., Zhang, S., Wei, N., Rao, C., and Jin, Y. S. (2015) Development and physiological characterization of cellobiose-consuming Yarrowia lipolytica. Biotechnology and Bioengineering 112, 1012-1022
  • Kim, S. R., Xu, H., Lesmana, A., Kuzmanovic, U., Au, M., Florencia, C., Oh, E. J., Zhang, G., Kim, K. H., and Jin, Y. S. (2015) Deletion of PHO13, encoding haloacid dehalogenase type IIA phosphatase, results in upregulation of the pentose phosphate pathway in Saccharomyces cerevisiae. Applied and Environmental Microbiology 81, 1601-1609
  • Kim, S. M., Guo, J., Kwak, S., Jin, Y. S., Lee, D. K., and Singh, V. (2015) Effects of genetic variation and growing condition of prairie cordgrass on feedstock composition and ethanol yield. Bioresource Technology 183, 70-77
  • Kim, S. K., Jin, Y. S., Choi, I. G., Park, Y. C., and Seo, J. H. (2015) Enhanced tolerance of Saccharomyces cerevisiae to multiple lignocellulose-derived inhibitors through modulation of spermidine contents. Metabolic Engineering 29, 46-55
  • Kim, S., Sung, J., Foo, M., Jin, Y. S., and Kim, P. J. (2015) Uncovering the nutritional landscape of food. PLoS ONE 10
  • Kim, J. W., Seo, S. O., Zhang, G. C., Jin, Y. S., and Seo, J. H. (2015) Expression of Lactococcus lactis NADH oxidase increases 2,3-butanediol production in Pdc-deficient Saccharomyces cerevisiae. Bioresource Technology 191, 512-519

2014

  • Zhang, G. C., Kong, I. I., Kim, H., Liu, J. J., Cate, J. H. D., and Jin, Y. S. (2014) Construction of a quadruple auxotrophic mutant of an industrial polyploid Saccharomyces cerevisiae strain by using RNA-guided Cas9 nuclease. Applied and Environmental Microbiology 80, 7694-7701
  • Nan, H., Seo, S. O., Oh, E. J., Seo, J. H., Cate, J. H. D., and Jin, Y. S. (2014) 2,3-Butanediol production from cellobiose by engineered Saccharomyces cerevisiae. Applied Microbiology and Biotechnology 98, 5757-5764
  • Lin, Y., Chomvong, K., Acosta-Sampson, L., Estrela, R., Galazka, J. M., Kim, S. R., Jin, Y. S., and Cate, J. H. (2014) Leveraging transcription factors to speed cellobiose fermentation by Saccharomyces cerevisiae. Biotechnology for Biofuels 7
  • Kim, T. Y., Oh, E. J., Jin, Y. S., and Oh, M. K. (2014) Improved resistance against oxidative stress of engineered cellobiose-fermenting Saccharomyces cerevisiae revealed by metabolite profiling. Biotechnology and Bioprocess Engineering 19, 951-957
  • Kim, S. R., and Jin, Y. S. (2014) Metabolic engineering of Saccharomyces cerevisiae for redox balance of xylose fermentation. Current Research on Agriculture and Life Sciences 32, 199-202
  • Kim, S. J., Seo, S. O., Park, Y. C., Jin, Y. S., and Seo, J. H. (2014) Production of 2,3-butanediol from xylose by engineered Saccharomyces cerevisiae. Journal of Biotechnology 192, 376-382
  • Kim, H., Lee, W. H., Galazka, J. M., Cate, J. H. D., and Jin, Y. S. (2014) Analysis of cellodextrin transporters from Neurospora crassa in Saccharomyces cerevisiae for cellobiose fermentation. Applied Microbiology and Biotechnology 98, 1087-1094
  • Chomvong, K., Kordić, V., Li, X., Bauer, S., Gillespie, A. E., Ha, S. J., Oh, E. J., Galazka, J. M., Jin, Y. S., and Cate, J. H. D. (2014) Overcoming inefficient cellobiose fermentation by cellobiose phosphorylase in the presence of xylose. Biotechnology for Biofuels 7
  • Bae, Y. H., Kang, K. H., Jin, Y. S., and Seo, J. H. (2014) Molecular cloning and expression of fungal cellobiose transporters and β-glucosidases conferring efficient cellobiose fermentation in Saccharomyces cerevisiae. Journal of Biotechnology 169, 34-41

2013

  • Wei, N., Xu, H., Kim, S. R., and Jin, Y. S. (2013) Deletion of FPS1, encoding aquaglyceroporin Fps1p, improves xylose fermentation by engineered Saccharomyces cerevisiae. Applied and Environmental Microbiology 79, 3193-3201
  • Wei, N., Quarterman, J., and Jin, Y. S. (2013) Marine macroalgae: An untapped resource for producing fuels and chemicals. Trends in Biotechnology 31, 70-77
  • Wang, Y., Li, X., Milne, C. B., Janssen, H., Lin, W., Phan, G., Hu, H., Jin, Y. S., Price, N. D., and Blascheka, H. P. (2013) Development of a gene knockout system using mobile group II introns (Targetron) and genetic disruption of acid production pathways in Clostridium beijerinckii. Applied and Environmental Microbiology 79, 5853-5863
  • Oh, E. J., Ha, S. J., Rin Kim, S., Lee, W. H., Galazka, J. M., Cate, J. H. D., and Jin, Y. S. (2013) Enhanced xylitol production through simultaneous co-utilization of cellobiose and xylose by engineered Saccharomyces cerevisiae. Metabolic Engineering 15, 226-234
  • Li, S., Ha, S. J., Kim, H. J., Galazka, J. M., Cate, J. H. D., Jin, Y. S., and Zhao, H. (2013) Investigation of the functional role of aldose 1-epimerase in engineered cellobiose utilization. Journal of Biotechnology 168, 1-6
  • Lee, W. H., Nan, H., Kim, H. J., and Jin, Y. S. (2013) Simultaneous saccharification and fermentation by engineered Saccharomyces cerevisiae without supplementing extracellular β-glucosidase. Journal of Biotechnology 167, 316-322
  • Lee, W. H., Kim, M. D., Jin, Y. S., and Seo, J. H. (2013) Engineering of NADPH regenerators in Escherichia coli for enhanced biotransformation. Applied Microbiology and Biotechnology 97, 2761-2772
  • Lee, K. S., Kim, J. S., Heo, P., Yang, T. J., Sung, Y. J., Cheon, Y., Koo, H. M., Yu, B. J., Seo, J. H., Jin, Y. S., Park, J. C., and Kweon, D. H. (2013) Characterization of Saccharomyces cerevisiae promoters for heterologous gene expression in Kluyveromyces marxianus. Applied Microbiology and Biotechnology 97, 2029-2041
  • Kim, S. R., Skerker, J. M., Kang, W., Lesmana, A., Wei, N., Arkin, A. P., and Jin, Y. S. (2013) Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in Saccharomyces cerevisiae. PLoS ONE 8
  • Kim, S. R., Park, Y. C., Jin, Y. S., and Seo, J. H. (2013) Strain engineering of Saccharomyces cerevisiae for enhanced xylose metabolism. Biotechnology Advances 31, 851-861
  • Kim, S. R., Lee, K. S., Kong, I. I., Lesmana, A., Lee, W. H., Seo, J. H., Kweon, D. H., and Jin, Y. S. (2013) Construction of an efficient xylose-fermenting diploid Saccharomyces cerevisiae strain through mating of two engineered haploid strains capable of xylose assimilation. Journal of Biotechnology 164, 105-111
  • Kim, S. R., Kwee, N. R., Kim, H., and Jin, Y. S. (2013) Feasibility of xylose fermentation by engineered Saccharomyces cerevisiae overexpressing endogenous aldose reductase (GRE3), xylitol dehydrogenase (XYL2), and xylulokinase (XYL3) from Scheffersomyces stipitis. FEMS Yeast Research 13, 312-321
  • Kim, S. J., Seo, S. O., Jin, Y. S., and Seo, J. H. (2013) Production of 2,3-butanediol by engineered Saccharomyces cerevisiae. Bioresource Technology 146, 274-281
  • Kim, H. J., Turner, T. L., and Jin, Y. S. (2013) Combinatorial genetic perturbation to refine metabolic circuits for producing biofuels and biochemicals. Biotechnology Advances 31, 976-985
  • Kim, H. J., Lee, H. R., Kim, C. S., Jin, Y. S., and Seo, J. H. (2013) Investigation of protein expression profiles of erythritol-producing Candida magnoliae in response to glucose perturbation. Enzyme and Microbial Technology 53, 174-180
  • Ha, S. J., Kim, S. R., Kim, H., Du, J., Cate, J. H. D., and Jin, Y. S. (2013) Continuous co-fermentation of cellobiose and xylose by engineered Saccharomyces cerevisiae. Bioresource Technology 149, 525-531
  • Ha, S. J., Kim, H., Lin, Y., Jang, M. U., Galazka, J. M., Kim, T. J., Cate, J. H. D., and Jin, Y. S. (2013) Single amino acid substitutions in HXT2.4 from Scheffersomyces stipitis lead to improved cellobiose fermentation by engineered Saccharomyces cerevisiae. Applied and Environmental Microbiology 79, 1500-1507
  • Ha, S. J., Galazka, J. M., Joong Oh, E., Kordić, V., Kim, H., Jin, Y. S., and Cate, J. H. D. (2013) Energetic benefits and rapid cellobiose fermentation by Saccharomyces cerevisiae expressing cellobiose phosphorylase and mutant cellodextrin transporters. Metabolic Engineering 15, 134-143
  • Guo, B., Zhang, Y., Yu, G., Lee, W. H., Jin, Y. S., and Morgenroth, E. (2013) Two-stage acidic-alkaline hydrothermal pretreatment of lignocellulose for the high recovery of cellulose and hemicellulose sugars. Applied Biochemistry and Biotechnology 169, 1069-1087

2012

  • Lee, W. H., Seo, S. O., Bae, Y. H., Nan, H., Jin, Y. S., and Seo, J. H. (2012) Isobutanol production in engineered Saccharomyces cerevisiae by overexpression of 2-ketoisovalerate decarboxylase and valine biosynthetic enzymes. Bioprocess and Biosystems Engineering 35, 1467-1475
  • Lee, W. H., Pathanibul, P., Quarterman, J., Jo, J. H., Han, N. S., Miller, M. J., Jin, Y. S., and Seo, J. H. (2012) Whole cell biosynthesis of a functional oligosaccharide, 2'-fucosyllactose, using engineered Escherichia coli. Microbial Cell Factories 11, 48
  • Kim, S. R., Ha, S. J., Wei, N., Oh, E. J., and Jin, Y. S. (2012) Simultaneous co-fermentation of mixed sugars: A promising strategy for producing cellulosic ethanol. Trends in Biotechnology 30, 274-282
  • Kim, S. R., Ha, S. J., Kong, I. I., and Jin, Y. S. (2012) High expression of XYL2 coding for xylitol dehydrogenase is necessary for efficient xylose fermentation by engineered Saccharomyces cerevisiae. Metabolic Engineering 14, 336-343
  • Jin, Y. S., and Cate, J. H. D. (2012) Model-guided strain improvement: Simultaneous hydrolysis and co-fermentation of cellulosic sugars. Biotechnology Journal 7, 328-329
  • Guo, B., Zhang, Y., Ha, S. J., Jin, Y. S., and Morgenroth, E. (2012) Combined biomimetic and inorganic acids hydrolysis of hemicellulose in Miscanthus for bioethanol production. Bioresource Technology 110, 278-287
  • Cha, C., Kim, S. R., Jin, Y. S., and Kong, H. (2012) Tuning structural durability of yeast-encapsulating alginate gel beads with interpenetrating networks for sustained bioethanol production. Biotechnology and Bioengineering 109, 63-73
  • Milne, C. B., Eddy, J. A., Raju, R., Ardekani, S., Kim, P. J., Senger, R. S., Jin, Y. S., Blaschek, H. P., and Price, N. D. (2011) Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052. BMC Systems Biology 5

2011

  • Lu, C. H., Choi, J. H., Engelmann Moran, N., Jin, Y. S., and Erdman, J. W. (2011) Laboratory-scale production of 13C-labeled lycopene and phytoene by bioengineered Escherichia coli. Journal of Agricultural and Food Chemistry 59, 9996-10005
  • Lee, K. S., Hong, M. E., Jung, S. C., Ha, S. J., Yu, B. J., Koo, H. M., Park, S. M., Seo, J. H., Kweon, D. H., Park, J. C., and Jin, Y. S. (2011) Improved galactose fermentation of Saccharomyces cerevisiae through inverse metabolic engineering. Biotechnology and Bioengineering 108, 621-631
  • Kim, J. S., Heo, P., Yang, T. J., Lee, K. S., Jin, Y. S., Kim, S. K., Shin, D., and Kweon, D. H. (2011) Bacterial persisters tolerate antibiotics by not producing hydroxyl radicals. Biochemical and Biophysical Research Communications 413, 105-110
  • Ha, S. J., Wei, Q., Kim, S. R., Galazka, J. M., Cate, J., and Jin, Y. S. (2011) Cofermentation of cellobiose and galactose by an engineered Saccharomyces cerevisiae Strain. Applied and Environmental Microbiology 77, 5822-5825 Link, Related News
  • Ha, S. J., Kim, S. R., Choi, J. H., Park, M. S., and Jin, Y. S. (2011) Xylitol does not inhibit xylose fermentation by engineered Saccharomyces cerevisiae expressing xylA as severely as it inhibits xylose isomerase reaction in vitro. Applied Microbiology and Biotechnology 92, 77-84
  • Ha, S. J., Galazka, J. M., Kim, S. R., Choi, J. H., Yang, X., Seo, J. H., Glass, N. L., Cate, J. H. D., and Jin, Y. S. (2011) Engineered Saccharomyces cerevisiae capable of simultaneous cellobiose and xylose fermentation. Proceedings of the National Academy of Sciences of the United States of America 108, 516-521 Link,In This Issue-PNAS, Related News

2010

  • Kim, S. R., Lee, K. S., Choi, J. H., Ha, S. J., Kweon, D. H., Seo, J. H., and Jin, Y. S. (2010) Repeated-batch fermentations of xylose and glucose-xylose mixtures using a respiration-deficient Saccharomyces cerevisiae engineered for xylose metabolism. Journal of Biotechnology 150, 404-407
  • Jung, S. C., Smith, C. L., Lee, K. S., Hong, M. E., Kweon, D. H., Stephanopoulos, G., and Jin, Y. S. (2010) Restoration of growth phenotypes of Escherichia coli DH5α in minimal media through reversal of a point mutation in purB. Applied and Environmental Microbiology 76, 6307-6309 Related News1, Related News2
  • Hong, M. E., Lee, K. S., Yu, B. J., Sung, Y. J., Park, S. M., Koo, H. M., Kweon, D. H., Park, J. C., and Jin, Y. S. (2010) Identification of gene targets eliciting improved alcohol tolerance in Saccharomyces cerevisiae through inverse metabolic engineering. Journal of Biotechnology 149, 52-59 Related News

2009

  • Tyo, K. E. J., Espinoza, F. A., Stephanopoulos, G., and Jin, Y. S. (2009) Identification of gene disruptions for increased poly-3-hydroxybutyrate accumulation in Synechocystis PCC 6803. Biotechnology Progress 25, 1236-1243
  • Shin, J. Y., Shin, J. I., Kim, J. S., Yang, Y. S., Hwang, Y., Yang, J. S., Shin, D., Seo, J. H., Jin, Y. S., Park, Y. C., Hwang, J. S., and Kweon, D. H. (2009) Assembly of Coenzyme Q10 nanostructure resembling nascent discoidal high density lipoprotein particle. Biochemical and Biophysical Research Communications 388, 217-221
  • Lee, K., Shin, J. Y., Yang, Y. S., Shin, J. I., Park, Y. C., Seo, J. H., Park, T. H., Shin, C. S., Jin, Y. S., and Kweon, D. H. (2009) Towards a microarray of functional membrane proteins: Assembly of a surface-attachable, membrane-protein-anchored membrane structure using apolipoprotein A-1. Enzyme and Microbial Technology 44, 217-222
  • Lee, J., Seo, E., Kweon, D. H., Park, K., and Jin, Y. S. (2009) Fermentation of rice bran and defatted rice bran for butanol production using Clostridium beijerinckii NCIMB 8052. Journal of Microbiology and Biotechnology 19, 482-490

2008

  • Lee, K. S., Shin, J. Y., Jang, Y. H., Kweon, D. H., Park, K. M., and Jin, Y. S. (2008) Production of casein phosphopeptides using Streptococcus faecalis var. liquefaciens cell immobilization. KSBB Journal 23, 59-64
  • Jung, C. H., Yang, Y. S., Kim, J. S., Shin, J. I., Jin, Y. S., Shin, J. Y., Lee, J. H., Chung, K. M., Hwang, J. S., Oh, J. M., Shin, Y. K., and Kweon, D. H. (2008) A search for synthetic peptides that inhibit soluble N-ethylmaleimide sensitive-factor attachment receptor-mediated membrane fusion. FEBS Journal 275, 3051-3063

2007 and before

  • Jung, S. C., Chung, C. Y., Kim, J. S., Kweon, D. H., Park, K. M., and Jin, Y. S. (2007) Policosanol production from rice bran oil byproducts. Food Engineering Progress 11, 337-347
  • Jin, Y. S., and Stephanopoulos, G. (2007) Multi-dimensional gene target search for improving lycopene biosynthesis in Escherichia coli. Metabolic Engineering 9, 337-347
  • Jeffries, T. W., Grigoriev, I. V., Grimwood, J., Laplaza, J. M., Aerts, A., Salamov, A., Schmutz, J., Lindquist, E., Dehal, P., Shapiro, H., Jin, Y. S., Passoth, V., and Richardson, P. M. (2007) Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Nature Biotechnology 25, 319-326
  • Laplaza, J. M., Torres, B. R., Jin, Y. S., and Jeffries, T. W. (2006) Sh ble and Cre adapted for functional genomics and metabolic engineering of Pichia stipitis. Enzyme and Microbial Technology 38, 741-747
  • Kim, J. S., Lee, K. W., Jin, Y. S., Yoo, S. J., Jung, K. Y., Lee, J. W., Lee, S. Y., and Hwang, D. H. (2006) Standardization on metabolic and biological pathway. Bioinformatics and Biosystems 1, 196-200
  • Jin, Y. S., Cruz, J., and Jeffries, T. W. (2005) Xylitol production by a Pichia stipitis D-xylulokinase mutant. Applied Microbiology and Biotechnology 68, 42-45
  • Jin, Y. S., Alper, H., Yang, Y. T., and Stephanopoulos, G. (2005) Improvement of xylose uptake and ethanol production in recombinant Saccharomyces cerevisiae through an inverse metabolic engineering approach. Applied and Environmental Microbiology 71, 8249-8256
  • Alper, H., Jin, Y. S., Moxley, J. F., and Stephanopoulos, G. (2005) Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli. Metabolic Engineering 7, 155-164
  • Jin, Y. S., Laplaza, J. M., and Jeffries, T. W. (2004) Saccharomyces cerevisiae engineered for xylose metabolism exhibits a respiratory response. Applied and Environmental Microbiology 70, 6816-6825
  • Jin, Y. S., and Jeffries, T. W. (2004) Stoichiometric network constraints on xylose metabolism by recombinant Saccharomyces cerevisiae. Metabolic Engineering 6, 229-238
  • Jeffries, T. W., and Jin, Y. S. (2004) Metabolic engineering for improved fermentation of pentoses by yeasts. Applied Microbiology and Biotechnology 63, 495-509
  • Jin, Y. S., Ni, H., Laplaza, J. M., and Jeffries, T. W. (2003) Optimal growth and ethanol production from xylose by recombinant Saccharomyces cerevisiae require moderate D-xylulokinase activity. Applied and Environmental Microbiology 69, 495-503
  • Jin, Y. S., and Jeffries, T. W. (2003) Changing flux of xylose metabolites by altering expression of xylose reductase and xylitol dehydrogenase in recombinant Saccharomyces cerevisiae. Applied Biochemistry and Biotechnology 106, 277-286
  • Jin, Y. S., Jones, S., Shi, N. Q., and Jeffries, T. W. (2002) Molecular cloning of XYL3 (D-xylulokinase) from Pichia stipitis and characterization of its physiological function. Applied and Environmental Microbiology 68, 1232-1239
  • Jin, Y. S., Lee, T. H., Choi, Y. D., Ryu, Y. W., and Seo, J. H. (2000) Conversion of xylose to ethanol by recombinant Saccharomyces cerevisiae containing genes for xylose reductase and xylitol dehydrogenase from Pichia stipitis. Journal of Microbiology and Biotechnology 10, 564-567
  • Jeffries, T. W., and Jin, Y. S. (2000) Ethanol and thermotolerance in the bioconversion of xylose by yeasts. Advances in Applied Microbiology 47, 221-268
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