*Jung, C. H., Yang, Y. S., Kim, J. S., Shin, J. I., Jin, Y. S., Shin, J. Y., Lee, J. H., Chung, K. M., Hwang, J. S., Oh, J. M., Shin, Y. K., and Kweon, D. H. (2008) A search for synthetic peptides that inhibit soluble N-ethylmaleimide sensitive-factor attachment receptor-mediated membrane fusion. '''FEBS Journal''' 275, 3051-3063
*Jung, C. H., Yang, Y. S., Kim, J. S., Shin, J. I., Jin, Y. S., Shin, J. Y., Lee, J. H., Chung, K. M., Hwang, J. S., Oh, J. M., Shin, Y. K., and Kweon, D. H. (2008) A search for synthetic peptides that inhibit soluble N-ethylmaleimide sensitive-factor attachment receptor-mediated membrane fusion. '''FEBS Journal''' 275, 3051-3063
===2006-2007===
===2007 and before===
*Jung, S.C., Chung, C.Y., Kim, J.S., Kweon, D.H., Park, K.M. & Jin, Y.S. Policosanol production from rice bran oil byproducts. '''Food Eng Prog''' 11, 293-297 (2007) [http://agris.fao.org/agris-search/search.do?recordID=KR2008001949 Link]
*Jung, S. C., Chung, C. Y., Kim, J. S., Kweon, D. H., Park, K. M., and Jin, Y. S. (2007) Policosanol production from rice bran oil byproducts. '''Food Engineering Progress''' 11, 337-347
* Jin, Y.S. & Stephanopoulos, G. Multi-dimensional gene target search for improving lycopene biosynthesis in Escherichia coli. '''Metab Eng''' 9, 337-347 (2007). [http://www.sciencedirect.com/science/article/pii/S109671760700016X Link]
* Jeffries, T.W., Grigoriev, I.V., Grimwood, J., Laplaza, J.M., Aerts, A., Salamov, A., Schmutz, J., Lindquist, E., Dehal, P., Shapiro, H., Jin, Y.S., Passoth, V. & Richardson, P.M. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. '''Nat Biotechnol''' 25, 319-326 (2007). [http://www.nature.com/nbt/journal/v25/n3/abs/nbt1290.html Link]
*Jin, Y. S., and Stephanopoulos, G. (2007) Multi-dimensional gene target search for improving lycopene biosynthesis in ''Escherichia coli''. '''Metabolic Engineering''' 9, 337-347
* Laplaza, J.M., Torres, B.R., Jin, Y.S. & Jeffries, T.W. Sh ble and Cre adapted for functional genomics and metabolic engineering of Pichia stipitis. '''Enz Microb Tech''' 38, 741-747 (2006). [http://www.sciencedirect.com/science/article/pii/S0141022905003492 Link]
* Jin, Y.S., Cruz, J. & Jeffries, T.W. Xylitol production by a Pichia stipitis D-xylulokinase mutant. '''Appl Microbiol Biotechnol''' 68, 42-45 (2005). [http://link.springer.com/article/10.1007/s00253-004-1854-5 Link]
*Jeffries, T. W., Grigoriev, I. V., Grimwood, J., Laplaza, J. M., Aerts, A., Salamov, A., Schmutz, J., Lindquist, E., Dehal, P., Shapiro, H., Jin, Y. S., Passoth, V., and Richardson, P. M. (2007) Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast ''Pichia stipitis''. '''Nature Biotechnology''' 25, 319-326
* Jin, Y.S., Alper, H., Yang, Y.T. & Stephanopoulos, G. Improvement of xylose uptake and ethanol production in recombinant Saccharomyces cerevisiae through an inverse metabolic engineering approach. '''Appl Environ Microbiol''' 71, 8249-8256 (2005). [http://aem.asm.org/content/71/12/8249.short Link]
* Alper, H., Jin, Y.S., Moxley, J.F. & Stephanopoulos, G. Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli. '''Metab Eng''' 7, 155-164 (2005). [http://www.sciencedirect.com/science/article/pii/S1096717604000849 Link]
*Laplaza, J. M., Torres, B. R., Jin, Y. S., and Jeffries, T. W. (2006) Sh ble and Cre adapted for functional genomics and metabolic engineering of ''Pichia stipitis''. '''Enzyme and Microbial Technology''' 38, 741-747
* Jin, Y.S., Laplaza, J.M. & Jeffries, T.W. Saccharomyces cerevisiae engineered for xylose metabolism exhibits a respiratory response. '''Appl Environ Microbiol''' 70, 6816-6825 (2004). [http://aem.asm.org/content/70/11/6816.short Link]
*Kim, J. S., Lee, K. W., Jin, Y. S., Yoo, S. J., Jung, K. Y., Lee, J. W., Lee, S. Y., and Hwang, D. H. (2006) Standardization on metabolic and biological pathway. '''Bioinformatics and Biosystems''' 1, 196-200
* Jeffries, T.W. & Jin, Y.S. Metabolic engineering for improved fermentation of pentoses by yeasts. '''Appl Microbiol Biotechnol''' 63, 495-509 (2004). [http://link.springer.com/article/10.1007/s00253-003-1450-0 Link]
* Jin, Y.S., Ni, H., Laplaza, J.M. & Jeffries, T.W. Optimal growth and ethanol production from xylose by recombinant Saccharomyces cerevisiae require moderate D-xylulokinase activity. '''Appl Environ Microbiol''' 69, 495-503 (2003). [http://aem.asm.org/content/69/1/495.short Link]
*Jin, Y. S., Cruz, J., and Jeffries, T. W. (2005) Xylitol production by a ''Pichia stipitis'' D-xylulokinase mutant. '''Applied Microbiology and Biotechnology''' 68, 42-45
* Jin, Y.S. & Jeffries, T.W. Changing flux of xylose metabolites by altering expression of xylose reductase and xylitol dehydrogenase in recombinant Saccharomyces cerevisiae. '''Appl Biochem Biotechnol''' 105 -108, 277-286 (2003). [http://link.springer.com/article/10.1385/ABAB:106:1-3:277#page-1 Link]
* Jin, Y.S., Jones, S., Shi, N.Q. & Jeffries, T.W. Molecular cloning of XYL3 (D-xylulokinase) from Pichia stipitis and characterization of its physiological function. '''Appl Environ Microbiol''' 68, 1232-1239 (2002). [http://aem.asm.org/content/68/3/1232.short Link]
*Jin, Y. S., Alper, H., Yang, Y. T., and Stephanopoulos, G. (2005) Improvement of xylose uptake and ethanol production in recombinant ''Saccharomyces cerevisiae'' through an inverse metabolic engineering approach. ''Applied and Environmental Microbiology'' 71, 8249-8256
* Jin, Y.S., Lee, T.H., Choi, Y.D., Ryu, Y.W. & Seo, J.H. Conversion of xylose to ethanol by recombinant Saccharomyces cerevisiae containing genes for xylose reductase and xylitol dehydrogenase from Pichia stipitis. '''J Microbiol Biotechnol''' 10, 564-567 (2000). [http://cat.inist.fr/?aModele=afficheN&cpsidt=1483799 Link]
* Jeffries, T.W. & Jin, Y.S. Ethanol and thermotolerance in the bioconversion of xylose by yeasts. '''Adv Appl Microbiol''' 47, 221-268 (2000). [http://www.ncbi.nlm.nih.gov/pubmed/12876799 Link]
*Alper, H., Jin, Y. S., Moxley, J. F., and Stephanopoulos, G. (2005) Identifying gene targets for the metabolic engineering of lycopene biosynthesis in ''Escherichia coli''. '''Metabolic Engineering''' 7, 155-164
*Jin, Y. S., Laplaza, J. M., and Jeffries, T. W. (2004) ''Saccharomyces cerevisiae'' engineered for xylose metabolism exhibits a respiratory response. '''Applied and Environmental Microbiology''' 70, 6816-6825
*Jin, Y. S., and Jeffries, T. W. (2004) Stoichiometric network constraints on xylose metabolism by recombinant ''Saccharomyces cerevisiae''. '''Metabolic Engineering''' 6, 229-238
*Jeffries, T. W., and Jin, Y. S. (2004) Metabolic engineering for improved fermentation of pentoses by yeasts. '''Applied Microbiology and Biotechnology''' 63, 495-509
*Jin, Y. S., Ni, H., Laplaza, J. M., and Jeffries, T. W. (2003) Optimal growth and ethanol production from xylose by recombinant ''Saccharomyces cerevisiae'' require moderate D-xylulokinase activity. '''Applied and Environmental Microbiology''' 69, 495-503
*Jin, Y. S., and Jeffries, T. W. (2003) Changing flux of xylose metabolites by altering expression of xylose reductase and xylitol dehydrogenase in recombinant ''Saccharomyces cerevisiae''. '''Applied Biochemistry and Biotechnology''' 106, 277-286
*Jin, Y. S., Jones, S., Shi, N. Q., and Jeffries, T. W. (2002) Molecular cloning of ''XYL3'' (D-xylulokinase) from ''Pichia stipitis'' and characterization of its physiological function. '''Applied and Environmental Microbiology''' 68, 1232-1239
*Jin, Y. S., Lee, T. H., Choi, Y. D., Ryu, Y. W., and Seo, J. H. (2000) Conversion of xylose to ethanol by recombinant ''Saccharomyces cerevisiae'' containing genes for xylose reductase and xylitol dehydrogenase from ''Pichia stipitis''. '''Journal of Microbiology and Biotechnology''' 10, 564-567
*Jeffries, T. W., and Jin, Y. S. (2000) Ethanol and thermotolerance in the bioconversion of xylose by yeasts. '''Advances in Applied Microbiology''' 47, 221-268
Xia, P. F., Zhang, G. C., Walker, B., Seo, S. O., Kwak, S., Liu, J., Kim, H., Ort, D., Wang, S. G., and Jin, Y. S. (2016) Recycling carbon dioxide during xylose fermentation by engineered Saccharomyces cerevisiae. ACS Synthetic Biology, in press
Park, J., Wang, Z., Lee, W.-H., Jameel, H., Jin, Y.-S., and Park, S. (2016) Effect of the two-stage autohydrolysis of hardwood on the enzymatic saccharification and subsequent fermentation with an efficient xylose-utilizing Saccharomyces cerevisiae. BioResources 11, 9584-9595
Choi, E. J., Kim, J. W., Kim, S. J., Seo, S. O., Lane, S., Park, Y. C., Jin, Y. S., and Seo, J. H. (2016) Enhanced production of 2,3-butanediol in pyruvate decarboxylase-deficient Saccharomyces cerevisiae through optimizing ratio of glucose/galactose. Biotechnology Journal, in press
Liu, J. J., Zhang, G. C., Oh, E. J., Pathanibul, P., Turner, T. L., and Jin, Y. S. (2016) Lactose fermentation by engineered Saccharomyces cerevisiae capable of fermenting cellobiose. Journal of Biotechnology 234, 99-104
Seo, S. O., Wang, Y., Lu, T., Jin, Y. S., and Blaschek, H. P. (2016) Characterization of a Clostridium beijerinckii spo0A mutant and its application for butyl butyrate production. Biotechnology and Bioengineering, in press
Zhang, G. C., Kong, II, Wei, N., Peng, D., Turner, T. L., Sung, B. H., Sohn, J. H., and Jin, Y. S. (2016) Optimization of an acetate reduction pathway for producing cellulosic ethanol by engineered yeast. Biotechnology and Bioengineering, in press
Wang, Y., Zhang, Z. T., Seo, S. O., Lynn, P., Lu, T., Jin, Y. S., and Blaschek, H. (2016) Gene transcription repression in Clostridium beijerinckii using CRISPR-dCas9. Biotechnology and Bioengineering, in press
Bode, L., Contractor, N., Barile, D., Pohl, P., Prudden, A., Boons, G.-J., Jin, Y. S., and Jennewein, S. (2016) Human Milk Oligosaccharides: Challenges and opportunities Nutrition Reviews, in press
Quarterman, J., Skerker, J. M., Feng, X., Liu, I. Y., Zhao, H., Arkin, A. P., and Jin, Y. S. (2016) Rapid and efficient galactose fermentation by engineered Saccharomyces cerevisiae. Journal of Biotechnology 229, 13-21
Wang, Y., Zhang, Z. T., Seo, S. O., Lynn, P., Lu, T., Jin, Y. S., and Blaschek, H. P. (2016) Bacterial genome editing with CRISPR-Cas9: deletion, integration, single nucleotide modification, and desirable "clean" mutant selection in Clostridium beijerinckii as an example. ACS Synthetic Biology 15, 721-732
Oh, E. J., Skerker, J. M., Kim, S. R., Wei, N., Turner, T. L., Maurer, M. J., Arkin, A. P., and Jin, Y. S. (2016) Gene amplification on demand accelerates cellobiose utilization in engineered Saccharomyces cerevisiae. Applied and Environmental Microbiology 82, 3631-3639
Xu, H., Kim, S., Sorek, H., Lee, Y., Jeong, D., Kim, J., Oh, E. J., Yun, E. J., Wemmer, D. E., Kim, K. H., Kim, S. R., and Jin, Y. S. (2016) PHO13 deletion-induced transcriptional activation prevents sedoheptulose accumulation during xylose metabolism in engineered Saccharomyces cerevisiae. Metabolic Engineering 34, 88-96
Xia, P. F., Zhang, G. C., Liu, J. J., Kwak, S., Tsai, C. S., Kong, II, Sung, B. H., Sohn, J. H., Wang, S. G., and Jin, Y. S. (2016) GroE chaperonins assisted functional expression of bacterial enzymes in Saccharomyces cerevisiae. Biotechnology and Bioengineering 113, 2149-2155
Seo, J. H., and Jin, Y. S. (2016) Editorial overview: Food biotechnology: Critical gap filler in the nexus of food, energy, and waste for a prosperous future. Current Opinion in Biotechnology 37, 4-7
Park, Y. C., Oh, E. J., Jo, J. H., Jin, Y. S., and Seo, J. H. (2016) Recent advances in biological production of sugar alcohols. Current Opinion in Biotechnology 37, 105-113
Liu, J. J., Kong, II, Zhang, G. C., Jayakody, L. N., Kim, H., Xia, P. F., Kwak, S., Sung, B. H., Sohn, J. H., Walukiewicz, H. E., Rao, C. V., and Jin, Y. S. (2016) Metabolic engineering of probiotic Saccharomyces boulardii. Applied and Environmental Microbiology 82, 2280-2287
Li, X., Park, A., Estrela, R., Kim, S. R., Jin, Y. S., and Cate, J. H. D. (2016) Comparison of xylose fermentation by two high-performance engineered strains of Saccharomyces cerevisiae. Biotechnology Reports 9, 53-56
Kim, J. S., Cho, D. H., Heo, P., Jung, S. C., Park, M., Oh, E. J., Sung, J., Kim, P. J., Lee, S. C., Lee, D. H., Lee, S., Lee, C. H., Shin, D., Jin, Y. S., and Kweon, D. H. (2016) Fumarate-mediated persistence of Escherichia coli against antibiotics. Antimicrobial Agents and Chemotherapy 60, 2232-2240
Jayakody, L. N., Lane, S., Kim, H., and Jin, Y. S. (2016) Mitigating health risks associated with alcoholic beverages through metabolic engineering. Current Opinion in Biotechnology 37, 173-181
2015
Zhang, G. C., Liu, J. J., Kong, I. I., Kwak, S., and Jin, Y. S. (2015) Combining C6 and C5 sugar metabolism for enhancing microbial bioconversion. Current Opinion in Chemical Biology 29, 49-57
Yun, E. J., Kwak, S., Kim, S. R., Park, Y. C., Jin, Y. S., and Kim, K. H. (2015) Production of (S)-3-hydroxybutyrate by metabolically engineered Saccharomyces cerevisiae. Journal of Biotechnology 209, 23-30
Wei, N., Oh, E. J., Million, G., Cate, J. H. D., and Jin, Y. S. (2015) Simultaneous utilization of cellobiose, xylose, and acetic acid from lignocellulosic biomass for biofuel production by an engineered yeast platform. ACS Synthetic Biology 4, 707-713
Wang, Y., Zhang, Z. T., Seo, S. O., Choi, K., Lu, T., Jin, Y. S., and Blaschek, H. P. (2015) Markerless chromosomal gene deletion in Clostridium beijerinckii using CRISPR/Cas9 system. Journal of Biotechnology 200, 1-5
Turner, T. L., Zhang, G. C., Oh, E. J., Subramaniam, V., Adiputra, A., Subramaniam, V., Skory, C. D., Jang, J. Y., Yu, B. J., Park, I., and Jin, Y. S. (2015) Lactic acid production from cellobiose and xylose by engineered Saccharomyces cerevisiae. Biotechnology and Bioengineering 113, 1075-1083
Turner, T. L., Zhang, G. C., Kim, S. R., Subramaniam, V., Steffen, D., Skory, C. D., Jang, J. Y., Yu, B. J., and Jin, Y. S. (2015) Lactic acid production from xylose by engineered Saccharomyces cerevisiae without PDC or ADH deletion. Applied Microbiology and Biotechnology 99, 8023-8033
Tsai, C. S., Kwak, S., Turner, T. L., and Jin, Y. S. (2015) Yeast synthetic biology toolbox and applications for biofuel production. FEMS Yeast Research 15, 1-15
Tsai, C. S., Kong, I. I., Lesmana, A., Million, G., Zhang, G. C., Kim, S. R., and Jin, Y. S. (2015) Rapid and marker-free refactoring of xylose-fermenting yeast strains with Cas9/CRISPR. Biotechnology and Bioengineering 112, 2406-2411
Quarterman, J., Kim, S. R., Kim, P. J., and Jin, Y. S. (2015) Enhanced hexose fermentation by Saccharomyces cerevisiae through integration of stoichiometric modeling and genetic screening. Journal of Biotechnology 194, 48-57
Liao, C., Seo, S. O., Celik, V., Liu, H., Kong, W., Wang, Y., Blaschek, H., Jin, Y. S., and Lu, T. (2015) Integrated, systems metabolic picture of acetone-butanol-ethanol fermentation by Clostridium acetobutylicum. Proceedings of the National Academy of Sciences of the United States of America 112, 8505-8510
Li, X., Yu, V. Y., Lin, Y., Chomvong, K., Estrela, R., Park, A., Liang, J. M., Znameroski, E. A., Feehan, J., Kim, S. R., Jin, Y. S., Louise Glass, N., and Cate, J. H. D. (2015) Expanding xylose metabolism in yeast for plant cell wall conversion to biofuels. eLife 4, 1-55
Lewis, Z. T., Totten, S. M., Smilowitz, J. T., Popovic, M., Parker, E., Lemay, D. G., Van Tassell, M. L., Miller, M. J., Jin, Y. S., German, J. B., Lebrilla, C. B., and Mills, D. A. (2015) Maternal fucosyltransferase 2 status affects the gut bifidobacterial communities of breastfed infants. Microbiome 3, 13
Lane, S., Zhang, S., Wei, N., Rao, C., and Jin, Y. S. (2015) Development and physiological characterization of cellobiose-consuming Yarrowia lipolytica. Biotechnology and Bioengineering 112, 1012-1022
Kim, S. R., Xu, H., Lesmana, A., Kuzmanovic, U., Au, M., Florencia, C., Oh, E. J., Zhang, G., Kim, K. H., and Jin, Y. S. (2015) Deletion of PHO13, encoding haloacid dehalogenase type IIA phosphatase, results in upregulation of the pentose phosphate pathway in Saccharomyces cerevisiae. Applied and Environmental Microbiology 81, 1601-1609
Kim, S. M., Guo, J., Kwak, S., Jin, Y. S., Lee, D. K., and Singh, V. (2015) Effects of genetic variation and growing condition of prairie cordgrass on feedstock composition and ethanol yield. Bioresource Technology 183, 70-77
Kim, S. K., Jin, Y. S., Choi, I. G., Park, Y. C., and Seo, J. H. (2015) Enhanced tolerance of Saccharomyces cerevisiae to multiple lignocellulose-derived inhibitors through modulation of spermidine contents. Metabolic Engineering 29, 46-55
Kim, S., Sung, J., Foo, M., Jin, Y. S., and Kim, P. J. (2015) Uncovering the nutritional landscape of food. PLoS ONE 10
Kim, J. W., Seo, S. O., Zhang, G. C., Jin, Y. S., and Seo, J. H. (2015) Expression of Lactococcus lactis NADH oxidase increases 2,3-butanediol production in Pdc-deficient Saccharomyces cerevisiae. Bioresource Technology 191, 512-519
2014
Zhang, G. C., Kong, I. I., Kim, H., Liu, J. J., Cate, J. H. D., and Jin, Y. S. (2014) Construction of a quadruple auxotrophic mutant of an industrial polyploid Saccharomyces cerevisiae strain by using RNA-guided Cas9 nuclease. Applied and Environmental Microbiology 80, 7694-7701
Nan, H., Seo, S. O., Oh, E. J., Seo, J. H., Cate, J. H. D., and Jin, Y. S. (2014) 2,3-Butanediol production from cellobiose by engineered Saccharomyces cerevisiae. Applied Microbiology and Biotechnology 98, 5757-5764
Lin, Y., Chomvong, K., Acosta-Sampson, L., Estrela, R., Galazka, J. M., Kim, S. R., Jin, Y. S., and Cate, J. H. (2014) Leveraging transcription factors to speed cellobiose fermentation by Saccharomyces cerevisiae. Biotechnology for Biofuels 7
Kim, T. Y., Oh, E. J., Jin, Y. S., and Oh, M. K. (2014) Improved resistance against oxidative stress of engineered cellobiose-fermenting Saccharomyces cerevisiae revealed by metabolite profiling. Biotechnology and Bioprocess Engineering 19, 951-957
Kim, S. R., and Jin, Y. S. (2014) Metabolic engineering of Saccharomyces cerevisiae for redox balance of xylose fermentation. Current Research on Agriculture and Life Sciences 32, 199-202
Kim, S. J., Seo, S. O., Park, Y. C., Jin, Y. S., and Seo, J. H. (2014) Production of 2,3-butanediol from xylose by engineered Saccharomyces cerevisiae. Journal of Biotechnology 192, 376-382
Kim, H., Lee, W. H., Galazka, J. M., Cate, J. H. D., and Jin, Y. S. (2014) Analysis of cellodextrin transporters from Neurospora crassa in Saccharomyces cerevisiae for cellobiose fermentation. Applied Microbiology and Biotechnology 98, 1087-1094
Chomvong, K., Kordić, V., Li, X., Bauer, S., Gillespie, A. E., Ha, S. J., Oh, E. J., Galazka, J. M., Jin, Y. S., and Cate, J. H. D. (2014) Overcoming inefficient cellobiose fermentation by cellobiose phosphorylase in the presence of xylose. Biotechnology for Biofuels 7
Bae, Y. H., Kang, K. H., Jin, Y. S., and Seo, J. H. (2014) Molecular cloning and expression of fungal cellobiose transporters and β-glucosidases conferring efficient cellobiose fermentation in Saccharomyces cerevisiae. Journal of Biotechnology 169, 34-41
2013
Wei, N., Xu, H., Kim, S. R., and Jin, Y. S. (2013) Deletion of FPS1, encoding aquaglyceroporin Fps1p, improves xylose fermentation by engineered Saccharomyces cerevisiae. Applied and Environmental Microbiology 79, 3193-3201
Wei, N., Quarterman, J., Kim, S. R., Cate, J. H. D., and Jin, Y. S. (2013) Enhanced biofuel production through coupled acetic acid and xylose consumption by engineered yeast. Nature Communications 4 Link, News Release from Natureasia, Inside Illinois, BBC News
Wei, N., Quarterman, J., and Jin, Y. S. (2013) Marine macroalgae: An untapped resource for producing fuels and chemicals. Trends in Biotechnology 31, 70-77
Wang, Y., Li, X., Milne, C. B., Janssen, H., Lin, W., Phan, G., Hu, H., Jin, Y. S., Price, N. D., and Blascheka, H. P. (2013) Development of a gene knockout system using mobile group II introns (Targetron) and genetic disruption of acid production pathways in Clostridium beijerinckii. Applied and Environmental Microbiology 79, 5853-5863
Oh, E. J., Ha, S. J., Rin Kim, S., Lee, W. H., Galazka, J. M., Cate, J. H. D., and Jin, Y. S. (2013) Enhanced xylitol production through simultaneous co-utilization of cellobiose and xylose by engineered Saccharomyces cerevisiae. Metabolic Engineering 15, 226-234
Li, S., Ha, S. J., Kim, H. J., Galazka, J. M., Cate, J. H. D., Jin, Y. S., and Zhao, H. (2013) Investigation of the functional role of aldose 1-epimerase in engineered cellobiose utilization. Journal of Biotechnology 168, 1-6
Lee, W. H., Nan, H., Kim, H. J., and Jin, Y. S. (2013) Simultaneous saccharification and fermentation by engineered Saccharomyces cerevisiae without supplementing extracellular β-glucosidase. Journal of Biotechnology 167, 316-322
Lee, W. H., Kim, M. D., Jin, Y. S., and Seo, J. H. (2013) Engineering of NADPH regenerators in Escherichia coli for enhanced biotransformation. Applied Microbiology and Biotechnology 97, 2761-2772
Lee, K. S., Kim, J. S., Heo, P., Yang, T. J., Sung, Y. J., Cheon, Y., Koo, H. M., Yu, B. J., Seo, J. H., Jin, Y. S., Park, J. C., and Kweon, D. H. (2013) Characterization of Saccharomyces cerevisiae promoters for heterologous gene expression in Kluyveromyces marxianus. Applied Microbiology and Biotechnology 97, 2029-2041
Kim, S. R., Skerker, J. M., Kang, W., Lesmana, A., Wei, N., Arkin, A. P., and Jin, Y. S. (2013) Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in Saccharomyces cerevisiae. PLoS ONE 8
Kim, S. R., Park, Y. C., Jin, Y. S., and Seo, J. H. (2013) Strain engineering of Saccharomyces cerevisiae for enhanced xylose metabolism. Biotechnology Advances 31, 851-861
Kim, S. R., Lee, K. S., Kong, I. I., Lesmana, A., Lee, W. H., Seo, J. H., Kweon, D. H., and Jin, Y. S. (2013) Construction of an efficient xylose-fermenting diploid Saccharomyces cerevisiae strain through mating of two engineered haploid strains capable of xylose assimilation. Journal of Biotechnology 164, 105-111
Kim, S. R., Kwee, N. R., Kim, H., and Jin, Y. S. (2013) Feasibility of xylose fermentation by engineered Saccharomyces cerevisiae overexpressing endogenous aldose reductase (GRE3), xylitol dehydrogenase (XYL2), and xylulokinase (XYL3) from Scheffersomyces stipitis. FEMS Yeast Research 13, 312-321
Kim, S. J., Seo, S. O., Jin, Y. S., and Seo, J. H. (2013) Production of 2,3-butanediol by engineered Saccharomyces cerevisiae. Bioresource Technology 146, 274-281
Kim, H. J., Turner, T. L., and Jin, Y. S. (2013) Combinatorial genetic perturbation to refine metabolic circuits for producing biofuels and biochemicals. Biotechnology Advances 31, 976-985
Kim, H. J., Lee, H. R., Kim, C. S., Jin, Y. S., and Seo, J. H. (2013) Investigation of protein expression profiles of erythritol-producing Candida magnoliae in response to glucose perturbation. Enzyme and Microbial Technology 53, 174-180
Ha, S. J., Kim, S. R., Kim, H., Du, J., Cate, J. H. D., and Jin, Y. S. (2013) Continuous co-fermentation of cellobiose and xylose by engineered Saccharomyces cerevisiae. Bioresource Technology 149, 525-531
Ha, S. J., Kim, H., Lin, Y., Jang, M. U., Galazka, J. M., Kim, T. J., Cate, J. H. D., and Jin, Y. S. (2013) Single amino acid substitutions in HXT2.4 from Scheffersomyces stipitis lead to improved cellobiose fermentation by engineered Saccharomyces cerevisiae. Applied and Environmental Microbiology 79, 1500-1507
Ha, S. J., Galazka, J. M., Joong Oh, E., Kordić, V., Kim, H., Jin, Y. S., and Cate, J. H. D. (2013) Energetic benefits and rapid cellobiose fermentation by Saccharomyces cerevisiae expressing cellobiose phosphorylase and mutant cellodextrin transporters. Metabolic Engineering 15, 134-143
Guo, B., Zhang, Y., Yu, G., Lee, W. H., Jin, Y. S., and Morgenroth, E. (2013) Two-stage acidic-alkaline hydrothermal pretreatment of lignocellulose for the high recovery of cellulose and hemicellulose sugars. Applied Biochemistry and Biotechnology 169, 1069-1087
2012
Lee, W. H., Seo, S. O., Bae, Y. H., Nan, H., Jin, Y. S., and Seo, J. H. (2012) Isobutanol production in engineered Saccharomyces cerevisiae by overexpression of 2-ketoisovalerate decarboxylase and valine biosynthetic enzymes. Bioprocess and Biosystems Engineering 35, 1467-1475
Lee, W. H., Pathanibul, P., Quarterman, J., Jo, J. H., Han, N. S., Miller, M. J., Jin, Y. S., and Seo, J. H. (2012) Whole cell biosynthesis of a functional oligosaccharide, 2'-fucosyllactose, using engineered Escherichia coli. Microbial Cell Factories 11, 48
Kim, S. R., Ha, S. J., Wei, N., Oh, E. J., and Jin, Y. S. (2012) Simultaneous co-fermentation of mixed sugars: A promising strategy for producing cellulosic ethanol. Trends in Biotechnology 30, 274-282
Kim, S. R., Ha, S. J., Kong, I. I., and Jin, Y. S. (2012) High expression of XYL2 coding for xylitol dehydrogenase is necessary for efficient xylose fermentation by engineered Saccharomyces cerevisiae. Metabolic Engineering 14, 336-343
Jin, Y. S., and Cate, J. H. D. (2012) Model-guided strain improvement: Simultaneous hydrolysis and co-fermentation of cellulosic sugars. Biotechnology Journal 7, 328-329
Guo, B., Zhang, Y., Ha, S. J., Jin, Y. S., and Morgenroth, E. (2012) Combined biomimetic and inorganic acids hydrolysis of hemicellulose in Miscanthus for bioethanol production. Bioresource Technology 110, 278-287
Cha, C., Kim, S. R., Jin, Y. S., and Kong, H. (2012) Tuning structural durability of yeast-encapsulating alginate gel beads with interpenetrating networks for sustained bioethanol production. Biotechnology and Bioengineering 109, 63-73
Milne, C. B., Eddy, J. A., Raju, R., Ardekani, S., Kim, P. J., Senger, R. S., Jin, Y. S., Blaschek, H. P., and Price, N. D. (2011) Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052. BMC Systems Biology 5
2011
Lu, C. H., Choi, J. H., Engelmann Moran, N., Jin, Y. S., and Erdman, J. W. (2011) Laboratory-scale production of 13C-labeled lycopene and phytoene by bioengineered Escherichia coli. Journal of Agricultural and Food Chemistry 59, 9996-10005
Lee, K. S., Hong, M. E., Jung, S. C., Ha, S. J., Yu, B. J., Koo, H. M., Park, S. M., Seo, J. H., Kweon, D. H., Park, J. C., and Jin, Y. S. (2011) Improved galactose fermentation of Saccharomyces cerevisiae through inverse metabolic engineering. Biotechnology and Bioengineering 108, 621-631
Kim, J. S., Heo, P., Yang, T. J., Lee, K. S., Jin, Y. S., Kim, S. K., Shin, D., and Kweon, D. H. (2011) Bacterial persisters tolerate antibiotics by not producing hydroxyl radicals. Biochemical and Biophysical Research Communications 413, 105-110
Ha, S. J., Wei, Q., Kim, S. R., Galazka, J. M., Cate, J., and Jin, Y. S. (2011) Cofermentation of cellobiose and galactose by an engineered Saccharomyces cerevisiae Strain. Applied and Environmental Microbiology 77, 5822-5825 Link, Related News
Ha, S. J., Kim, S. R., Choi, J. H., Park, M. S., and Jin, Y. S. (2011) Xylitol does not inhibit xylose fermentation by engineered Saccharomyces cerevisiae expressing xylA as severely as it inhibits xylose isomerase reaction in vitro. Applied Microbiology and Biotechnology 92, 77-84
Ha, S. J., Galazka, J. M., Kim, S. R., Choi, J. H., Yang, X., Seo, J. H., Glass, N. L., Cate, J. H. D., and Jin, Y. S. (2011) Engineered Saccharomyces cerevisiae capable of simultaneous cellobiose and xylose fermentation. Proceedings of the National Academy of Sciences of the United States of America 108, 516-521 Link,In This Issue-PNAS, Related News
2010
Kim, S. R., Lee, K. S., Choi, J. H., Ha, S. J., Kweon, D. H., Seo, J. H., and Jin, Y. S. (2010) Repeated-batch fermentations of xylose and glucose-xylose mixtures using a respiration-deficient Saccharomyces cerevisiae engineered for xylose metabolism. Journal of Biotechnology 150, 404-407
Jung, S. C., Smith, C. L., Lee, K. S., Hong, M. E., Kweon, D. H., Stephanopoulos, G., and Jin, Y. S. (2010) Restoration of growth phenotypes of Escherichia coli DH5α in minimal media through reversal of a point mutation in purB. Applied and Environmental Microbiology 76, 6307-6309 Related News1, Related News2
Hong, M. E., Lee, K. S., Yu, B. J., Sung, Y. J., Park, S. M., Koo, H. M., Kweon, D. H., Park, J. C., and Jin, Y. S. (2010) Identification of gene targets eliciting improved alcohol tolerance in Saccharomyces cerevisiae through inverse metabolic engineering. Journal of Biotechnology 149, 52-59 Related News
2009
Tyo, K. E. J., Espinoza, F. A., Stephanopoulos, G., and Jin, Y. S. (2009) Identification of gene disruptions for increased poly-3-hydroxybutyrate accumulation in Synechocystis PCC 6803. Biotechnology Progress 25, 1236-1243
Shin, J. Y., Shin, J. I., Kim, J. S., Yang, Y. S., Hwang, Y., Yang, J. S., Shin, D., Seo, J. H., Jin, Y. S., Park, Y. C., Hwang, J. S., and Kweon, D. H. (2009) Assembly of Coenzyme Q10 nanostructure resembling nascent discoidal high density lipoprotein particle. Biochemical and Biophysical Research Communications 388, 217-221
Lee, K., Shin, J. Y., Yang, Y. S., Shin, J. I., Park, Y. C., Seo, J. H., Park, T. H., Shin, C. S., Jin, Y. S., and Kweon, D. H. (2009) Towards a microarray of functional membrane proteins: Assembly of a surface-attachable, membrane-protein-anchored membrane structure using apolipoprotein A-1. Enzyme and Microbial Technology 44, 217-222
Lee, J., Seo, E., Kweon, D. H., Park, K., and Jin, Y. S. (2009) Fermentation of rice bran and defatted rice bran for butanol production using Clostridium beijerinckii NCIMB 8052. Journal of Microbiology and Biotechnology 19, 482-490
2008
Lee, K. S., Shin, J. Y., Jang, Y. H., Kweon, D. H., Park, K. M., and Jin, Y. S. (2008) Production of casein phosphopeptides using Streptococcus faecalis var. liquefaciens cell immobilization. KSBB Journal 23, 59-64
Jung, C. H., Yang, Y. S., Kim, J. S., Shin, J. I., Jin, Y. S., Shin, J. Y., Lee, J. H., Chung, K. M., Hwang, J. S., Oh, J. M., Shin, Y. K., and Kweon, D. H. (2008) A search for synthetic peptides that inhibit soluble N-ethylmaleimide sensitive-factor attachment receptor-mediated membrane fusion. FEBS Journal 275, 3051-3063
2007 and before
Jung, S. C., Chung, C. Y., Kim, J. S., Kweon, D. H., Park, K. M., and Jin, Y. S. (2007) Policosanol production from rice bran oil byproducts. Food Engineering Progress 11, 337-347
Jin, Y. S., and Stephanopoulos, G. (2007) Multi-dimensional gene target search for improving lycopene biosynthesis in Escherichia coli. Metabolic Engineering 9, 337-347
Jeffries, T. W., Grigoriev, I. V., Grimwood, J., Laplaza, J. M., Aerts, A., Salamov, A., Schmutz, J., Lindquist, E., Dehal, P., Shapiro, H., Jin, Y. S., Passoth, V., and Richardson, P. M. (2007) Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Nature Biotechnology 25, 319-326
Laplaza, J. M., Torres, B. R., Jin, Y. S., and Jeffries, T. W. (2006) Sh ble and Cre adapted for functional genomics and metabolic engineering of Pichia stipitis. Enzyme and Microbial Technology 38, 741-747
Kim, J. S., Lee, K. W., Jin, Y. S., Yoo, S. J., Jung, K. Y., Lee, J. W., Lee, S. Y., and Hwang, D. H. (2006) Standardization on metabolic and biological pathway. Bioinformatics and Biosystems 1, 196-200
Jin, Y. S., Cruz, J., and Jeffries, T. W. (2005) Xylitol production by a Pichia stipitis D-xylulokinase mutant. Applied Microbiology and Biotechnology 68, 42-45
Jin, Y. S., Alper, H., Yang, Y. T., and Stephanopoulos, G. (2005) Improvement of xylose uptake and ethanol production in recombinant Saccharomyces cerevisiae through an inverse metabolic engineering approach. Applied and Environmental Microbiology 71, 8249-8256
Alper, H., Jin, Y. S., Moxley, J. F., and Stephanopoulos, G. (2005) Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli. Metabolic Engineering 7, 155-164
Jin, Y. S., Laplaza, J. M., and Jeffries, T. W. (2004) Saccharomyces cerevisiae engineered for xylose metabolism exhibits a respiratory response. Applied and Environmental Microbiology 70, 6816-6825
Jin, Y. S., and Jeffries, T. W. (2004) Stoichiometric network constraints on xylose metabolism by recombinant Saccharomyces cerevisiae. Metabolic Engineering 6, 229-238
Jeffries, T. W., and Jin, Y. S. (2004) Metabolic engineering for improved fermentation of pentoses by yeasts. Applied Microbiology and Biotechnology 63, 495-509
Jin, Y. S., Ni, H., Laplaza, J. M., and Jeffries, T. W. (2003) Optimal growth and ethanol production from xylose by recombinant Saccharomyces cerevisiae require moderate D-xylulokinase activity. Applied and Environmental Microbiology 69, 495-503
Jin, Y. S., and Jeffries, T. W. (2003) Changing flux of xylose metabolites by altering expression of xylose reductase and xylitol dehydrogenase in recombinant Saccharomyces cerevisiae. Applied Biochemistry and Biotechnology 106, 277-286
Jin, Y. S., Jones, S., Shi, N. Q., and Jeffries, T. W. (2002) Molecular cloning of XYL3 (D-xylulokinase) from Pichia stipitis and characterization of its physiological function. Applied and Environmental Microbiology 68, 1232-1239
Jin, Y. S., Lee, T. H., Choi, Y. D., Ryu, Y. W., and Seo, J. H. (2000) Conversion of xylose to ethanol by recombinant Saccharomyces cerevisiae containing genes for xylose reductase and xylitol dehydrogenase from Pichia stipitis. Journal of Microbiology and Biotechnology 10, 564-567
Jeffries, T. W., and Jin, Y. S. (2000) Ethanol and thermotolerance in the bioconversion of xylose by yeasts. Advances in Applied Microbiology 47, 221-268
