KP Ramirez Week 4

come up with a question to email about what you felt should be asked in this paper?

I began by loading up the Markham paper from PubMed then clicking on the nucleotides links. From there I could access GenBank. I noted that the links seemed to be invalid however I was able to access them through a different browser.

Assignment

• What was the accession number of the sequence you chose?

• AF089141 (number 6)
• AF089142 (Number 5)
• AF016767 (Number 4)
• AF016818 (Number 3)

• Which subject of the study was that HIV sequence from? Which section of the record contains information about who the HIV was collected from?

• S3V5-10 Subject 3, Visit 5, 10th clone. Found under features and source
• S3V6-1 (Number 5)
• subject 1 visit 1 (Number 4)
• subject 2, visit 4 (Number 3)

• Download several (4 to 6) sequences in FASTA format to your local hard drive by selecting several at the same time in the summary view so they are saved into a single text file. Be careful to remember where you put the file and what you name it so that you can find it later.

• Completed

• Open the file that you saved with a word processor to confirm that you have the sequences and that they are in the FASTA format. In the FASTA format each sequence is preceeded by a label which begins with the greater than sign (>).

• Completed

Journal Assignments

KP Ramirez Week 2	KP Ramirez Week 6	KP Ramirez Week OFF
KP Ramirez Week 3	KP Ramirez Week 7	KP Ramirez Week 11
KP Ramirez Week 4	KP Ramirez Week 8	KP Ramirez Week 12
KP Ramirez Week 5	KP Ramirez Week 9	KP Ramirez Week 13

Shared Journals

1. Week 2
2. Week 3
3. Week 4
4. Week 5
5. Week 6
6. Week 7
7. Week 8
8. Week 9
9. Week 10
10. Week 11
11. Week 12
12. Week 13

Useful Links

• Introductory tutorial
• OpenWetWare help pages
• BIOL398-01/S10:People