Kafatos:Microarray annotations: Difference between revisions
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'''EMBL A. gambiae MMC2 12k v1''' | '''EMBL A. gambiae MMC2 12k v1''' | ||
[[Media:MMC2 | Download [[Media:EMBL MMC2 12k v1 ANNOT single line.txt|this tab-delimited file of annotations]] based on the mapping of MMC2 reporters to the AgamP3.3 assembly/gene build using the VectorBase pipeline [http://wiki.vectorbase.org/vectorbase/index.php/Probe_mapping_progress_report#MMC2]. All annotations are derived from the corresponding Ensembl gene(s) and transcript(s). When a microarray reporter (probe) corresponds to more than one gene, the corresponding annotations are joined with a vertical bar ("|"). Duplicate annotations (e.g. where two different transcipts contain the same domains) are removed. | ||
If your existing data files contain ENSANGTnnnnnnnnnn reporter IDs, you will have to convert them to "gene-neutral" IDs (e.g. 123.4.5) using the [[Media:MMC2 grid1 150205.gal|this GAL file]], before using the annotation file. | |||
Revision as of 02:49, 17 October 2006
MMC2 annotation
EMBL A. gambiae MMC2 12k v1
Download this tab-delimited file of annotations based on the mapping of MMC2 reporters to the AgamP3.3 assembly/gene build using the VectorBase pipeline [1]. All annotations are derived from the corresponding Ensembl gene(s) and transcript(s). When a microarray reporter (probe) corresponds to more than one gene, the corresponding annotations are joined with a vertical bar ("|"). Duplicate annotations (e.g. where two different transcipts contain the same domains) are removed.
If your existing data files contain ENSANGTnnnnnnnnnn reporter IDs, you will have to convert them to "gene-neutral" IDs (e.g. 123.4.5) using the this GAL file, before using the annotation file.
