Kevin Matthew McKay Week 9: Difference between revisions

Latest revision as of 12:06, 2 April 2013

t15
- 1474 genes have p value < 0.05
- 345 genes have p < 0.01
- 30 genes have p < 0.001
- 4 genes have p < 0.0001
t30
- 946 genes have p value < 0.05
- 266 genes have p < 0.01
- 34 genes have p < 0.001
- 6 genes have p < 0.0001
t60
- 1006 genes have p value < 0.05
- 274 genes have p < 0.01
- 35 genes have p < 0.001
- 0 genes have p < 0.0001
t90
- 732 genes have p value < 0.05
- 190 genes have p < 0.01
- 12 genes have p < 0.001
- 1 gene have p < 0.0001
t120
- 397 genes have p value < 0.05
- 89 genes have p < 0.01
- 9 genes have p < 0.001
- 1 gene have p < 0.0001

@@ Line 33: / Line 33: @@
 *t15-t90 0 genes have p < 0.05
 *t120 1 gene has p < 0.05
+==more questions==
+*Keeping the "Pval" filter at p < 0.05, filter the "AvgLogFC" column to show all genes with an average log fold change greater than zero. How many meet these two criteria?
+**613
+*Keeping the "Pval" filter at p < 0.05, filter the "AvgLogFC" column to show all genes with an average log fold change less than zero. How many meet these two criteria?
+**861
+*Keeping the "Pval" filter at p < 0.05, How many have an average log fold change of >0.25 and p < 0.05?
+**600
+*How many have an average log fold change of < -0.25 and p < 0.05? (These are more realistic values for the fold change cut-offs because it represents about a 20% fold change which is about the level of detection of this technology.)
+**815
+==NSR1==
+*avg
+**t15:2.04
+**t30:2.21
+**t60:2.43
+**t90:-1.59
+**t120:-.056
+*pval
+**t15:.0174
+**t30:.0320
+**t60:.0020
+**t90:.0102
+**t120:.2257
+==more questions 2==
+*Smallest pval is 0.0000454949980265369 for gene YJR100C
+*Gene function is unknown, maybe the function of this gene has something to do with adaptation or acclimation to cold