Kim:Publications
Summary: 71 journal papers, 19 issued or pending patents, 56 peer reviewed conference proceedings, 2 book and 10 book chapters.
Please direct any questions regarding publications or reprints to Dr. Kim;
[deokho@uw.edu]
Kim Lab Cover Art
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2015
[J71] D. Huh and D.H. Kim, “Microengineered cell- and tissue-based assays for drug screening and toxicology applications,” Journal of Laboratory Automation, vol. 20, pp. 79-81, Editorial, 2015.
Article
[J70] Kshitiz, J. Afzal, E.H. Ahn, Y. Suhail, R. Goyal, M. Hubbi, Q. Hussaini, D.E. Ellison, B. Nacev, D.H. Kim, J. Lee, S. Frankel, K. Gray, R. Bankoti, A. Chien, and A. Levchenko, “Control of the interface between heterotypic cell populations reveals the mechanism of intercellular transfer of signaling proteins,” Integrative Biology, vol. 7, pp.364-372, 2015. Article
[J69] H. Jeon*, J.H. Tsui*, S.I. Jang*, J.H. Lee, K. Mun, S. Park, Y.C. Boo#, and D.H. Kim#, “Combined effects of substrate topography and stiffness on endothelial cytokines and chemokines secretion,” ACS Applied Materials and Interfaces, vol. 7, pp. 4525-4532, 2015. Article
[J68] K.H. Nam*, A.Smith*, S. Lone, S. Kwon, and D.H. Kim#, "Biomimetic three-dimensional tissue models for advanced high-throughput drug screening," Journal of Laboratory Automation, 2015. (in press) Article
[J67] A.M. Mikheev, S.A. Mikheeva, A.D. Trister, M.J. Tokita, S.N. Emerson, C.A. Parada, D.E. Born, B. Carnemolla, S. Frankel1, D.H. Kim, R.G. Oxford, Y. Kosai, K.R. Tozer-Fink, T.C. Manning, J.R. Silber, and R.C. Rostomily “Periostin is a novel therapeutic target that predicts and regulates glioma malignancy,” Neuro-Oncology, vol. 17, pp. 372-382, 2015. Article
[J66] P. Mengsteab, J.Y. Kwon, H.T. Ryoon, B.M. Suk, K.T. Kyun, D.H. Kim, and S.J. Kim “Factors Associated with the Improvement of Vocal Fold Movement: An Analysis of LEMG and Laryngeal CT Parameters," Journal of Electromyography and Kinesiology, 2015. (in press) Article
[J65] Kshitiz, J. Afzal, S. Y. Kim, and D.H. Kim#, "A nanotopography approach for studying the structure-function relationships of cells and tissues," Cell Adhesion and Migration, 2015. (invited)(in press) Article
2014
[J64] F. Pati, J. Jang, D.H. Ha, S.W. Kim, J.W. Rhie, J.H. Shim, D.H. Kim, and D.W. Cho, “Printing three dimensional tissue analog with decellularized extracellular matrix bioink,” Nature Communications, vol.5, no.3935, 2014. Article
[J63] A. Shapira, D.H. Kim, and T. Dvir, “Advanced micro and nanofabrication technologies in tissue engineering,” Biofabrication, vol.6, 020301, 2014. Article
[J62] C. Nemeth, K. Janebodin, A. E. Yuan, J.E. Dennis, M. Reyes#, and D.H. Kim#, “Enhanced chondrogenic differentiation of dental pulp stem cells using nanopatterned PEG-GelMA-HA hydrogels,” Tissue Engineering vol. 20, pp. 2817-2829, 2014. Article
[J61] J.E. Kim, S.M. Lee, S.H. Kim, P. Tatman, A.O. Gee, D.H. Kim, Y.M. Jung, and S.J. Kim, “The effect of self-assembled peptide-mesenchymal stem cell complex on the progression of osteoarthritis in a rat model,” International Journal of Nanomedicine, vol. 9, pp. 141-157, 2014. Article
[J60] Kshitiz J. Afzal, D.H. Kim, and A. Levchenko, "Mechanotransduction via p190RhoGAP regulates a switch between cardiomyogenic and endothelial lineages in adult cardiac progenitors," Stem Cells, vol. 32, pp. 1999 – 2007, 2014. (invited) Article
[J59] P. Kim, A. Yuan, K. Nam, A. Jiao, and D.H. Kim#, “Fabrication of poly(ethylene glycol):gelatin methacrylate composite nanostructures with tunable stiffness and degradation for vascular tissue engineering,” Biofabrication, vol.6, 024112, 2014. Article
[J58] E.S. Kim, E.H. Ahn, T. Dvir, and D.H. Kim#, “Emerging nanotechnology approaches in tissue engineering and regenerative medicine,” International Journal of Nanomedicine, vol. 9, pp. 1-5, 2014. Article
[J57] A. Jiao, N. Trosper, H.S. Yang, J.S. Kim, J. Tsui, S. Frankel, C.E. Murry, and D.H. Kim#, “A thermoresponsive nanofabricated substratum for the engineering of three-dimensional tissues with layer-by-layer architectural control,” ACS Nano, vol. 8, pp. 4430-4439, 2014. Article
[J56] S. Chaterji, P. Kim, S.H. Choe, J.H. Tsui, A.B. Baker#, and D.H. Kim#, “Synergistic effects of matrix nanotopography and stiffness on vascular smooth muscle cell function,” Tissue Engineering Part A, vol. 20, pp. 2115-2126, 2014. Article
[J55] J. Macadangdang, A. Jiao, D. Carson, H.J. Lee, J.A. Fugate, L.M. Pabon, M. Regnier, C. Murry, and D.H. Kim#, “Capillary force lithography for cardiac tissue engineering,” Journal of Visualized Experiments, e50039, 2014. Article
[J54] E.H. Ahn, Y.H. Kim, Kshitiz, S. An, S.W. Lee, M. Kwak, K.Y. Suh, D.H. Kim#, and A. Levchenko#, “Spatial control of adult stem cell fate using nanotopographic cues,” Biomaterials, vol. 35, pp. 2401–2410, 2014. (highlighted in Faculty of 1000 Biology) Article
[J53] H.S. Yang, N. Ieronimakis, J. Tsui, H.N. Kim, K.Y. Suh, M. Reyes#, and D.H. Kim#, “Nanopatterned muscle cell patches for enhanced myogenesis and dystrophin expression in a mouse model of muscular dystrophy,” Biomaterials, vol. 35, pp. 1478-1486, 2014. Article
2013
[J52] J.H. Kim, H.N. Kim, K.T. Lim, Y. Kim, S. Hoon, S. H. Park, H. J. Lim, D.H. Kim, P.H. Choung, Y.H. Choung, K.Y. Suh, and J.H. Chung, "Designing nanotopographical density of extracellular matrix for controlled morphology and function of human mesencymal stem cells," Scientific Reports, vol. 3, pp. 3552, 2013. Article PDF
[J51] J. Tsui, W. H. Lee, S. Pun, J. K. Kim#, and D.H. Kim#, "Microfluidics-assisted drug carrier production and drug screening," Advanced Drug Delivery Review, vol. 65, pp.1575-1588, 2013. Article
[J50] E.S. Kim, E.H. Ahn, E.H. Chung, and D.H. Kim#, “Recent advances in nanobiotechnology and high-throughput molecular techniques for systems biomedicine,“ Molecules and Cells, vol. 36, pp. 477-484, 2013. (invited) Article
[J49] S.H. Park, M.S. Kim, D. Lee, Y.W. Choi, D.H. Kim#, and K.Y. Suh#, “Hybrid microfabrication of nanofiber-based sheets and rods for tissue engineering applications,” Journal of Laboratory Automation, vol. 18, pp. 494-503, 2013. (# corresponding authors)Article
[J48] B. Lee, A. Jiao, S.J. Yu, J.B. You, D.H. Kim#, and S.K. Im#, “Initiated chemical vapor deposition of thermoresponsive poly(N-vinylcaprolactam) thin films for cell sheet engineering,” Acta Biomaterialia, vol. 9, pp. 7691–7698, 2013. ( # corresponding authors) Article
[J47] J. H. Kim, K. S. Choi, Y. Kim, K.-T. Lim, H. Seonwoo, Y. Park, D.H. Kim, P.H. Choung, C.-S. Cho, S.Y. Kim, Y.H. Choung, and J. H. Chung, "Bioactive effects of graphene oxide cell culture substratum on structure and function of human adipose-derived stem cells," Journal of Biomedical Materials Research: Part A, vol. 101, pp. 3520–3530, 2013. (Featured as a Cover Article) Article
[J46] M. E. Hubbi, Kshitiz, D.M. Gilkes, S. Rey, C. C. Wong, W. Luo, D.H. Kim, C. V. Dang, A. Levchenko, and G. Semenza, “A non-transcriptional role for HIF-1α as a direct inhibitor of DNA replication,” Science Signaling, vol. 6, pp. ra10, 2013. (Featured as a Cover Article; Highlighted in Science)Article; Podcast
[J45] Y. Suhail, Kshitiz, J. Lee, M. Walker, D.H. Kim, M.D. Brennan, J. Bader, and A. Levchenko, “Modeling intercellular transfer of biomolecules through tunneling nanotubes,” Bulletin of Mathematical Biology, vol. 75, pp. 1400-1416, 2013. Article
[J44] H. N. Kim, A. Jiao, N.S. Hwang, M.S. Kim, D.H. Kang, D.H. Kim, and K. Suh, "Nanotopography-guided tissue engineering and regenerative medicine" Advanced Drug Delivery Review vol. 64, pp. 536-558, 2013. (Featured as a Cover Article) Article
2012
[J43] D.H. Kim, Kshitiz, R. R. Smith, P. Kim, E. H. Ahn, H.N. Kim, E Marban, K.Y. Suh, and A. Levchenko, "Nanopatterned cardiac cell patches promote stem cell niche formation and myocardial regeneration" Integrative Biology, Vol. 4, pp. 1019-1033, 2012 (Featured as a Cover Article) Article
[J42] Kshitiz, J.S. Park, P. Kim, W. Helen, A.J. Engler, A. Levchenko, and D.H. Kim#, “Control of stem cell fate and function by engineering physical microenvironments” Integrative Biology, vol. 9, pp. 1008-1018, 2012. Article
[J41] Kshitiz, M.E. Hubbi, E.H. Ahn, J. Downey, D.H. Kim, S. Rey, J. Afzal, A. Kundo, G.L. Semenza, R. M. Abraham, and A. Levchenko, “Matrix rigidity controls endothelial differentiation and morphogenesis of cardiac precursors,” Science Signaling vol. 5, Issue. 227, ra41, 2012. (Featured as a Cover Article; also featured in "The matter of the heart" Science 336 (6088):1483-84 (2012) and the JHU press release) Article
[J40] H. N. Kim, D.H. Kang, M.S. Kim, A. Jiao, D.H. Kim, and K. Suh, "Patterning methods for polymers in cell and tissue engineering," Annals of Biomedical Engineering Vol. 40 No. 6, 1339-1355, 2012. (Award for Most Downloaded and Most Cited Review Article in 2012) Article
[J39] J. Kim*, D.H. Kim*, K. T. Lim, H. S. Woo, S. H. Park, Y.R. Kim, Y. Kim, Y.H. Choung, P.-H. Choung, and J. H. Chung, "Charged nanomatrices as efficient platforms for modulating cell adhesion and shape," Tissue Engineering Part C: Methods vol. 18, pp. 913-923 (Featured as a Cover Article) Article
[J38] T. Garzon-Muvdi, P. Schiapparelli, C. Rhys, H. Guerrero-Cazares, C. Smith, D.H. Kim, L. Kone, H. Farber, D.Y. Lee, S.S. An, A. Levchenko*, A. Quiñones-Hinojosa* "Regulation of brain tumor dispersal by NKCC1 through a novel role in focal adhesion regulation," PLoS Biology, Vol. 10, Issue. 5, e1001320, 2012. Article
[J37] D.H. Kim#, P. Provenzano, C.L. Smith, and A. Levchenko#, “Matrix nanotopography as a regulator of cell function,” Journal of Cell Biology vol. 197 no. 3 pp. 351-360, 2012.( # corresponding authors) Article
[J36] J.S. Park, H.N. Kim, D.H. Kim, A. Levchenko, and K.Y. Suh, “Quantitative analysis of the combined effect of substrate rigidity and topographic guidance on cell morphology,” IEEE Nanobioscience Vol. 11, pp. 28-36, 2012. Article
2011
[J35] K. Gupta, D.H. Kim, D. Beebe, and A. Levchenko, “Micro and nanoengineering for stem cell biology: the promise with a caution,” Trends in Biotechnology, Vol. 29, pp.399-408, 2011. (Selected as Top 25 Hottest Articles) Article
[J34] J. Kim, I. Hwang, D. Britain, T.D. Chung, Y. Sun, and D.H. Kim#, "Microfluidic approaches for gene delivery and gene therapy," Lab on a Chip, vol. 11, pp. 3941 - 3948, 2011. Article
[J33] E. Hur*, I.H. Yang*, D.H. Kim*, J. Byun, W.-L. Xu, S. Jilafu, R. Cheong, A. Levchenko, N. Thakor, and F. Zhou, “Engineering neuronal growth cone to promote axon regeneration over inhibitory molecules,” Proceedings of the National Academy of Sciences USA, vol. 108, pp. 5057-5062, 2011. ( *Equal contribution). Article
[J32] D.H. Kim and Y. Sun, “Micro- and nanoengineered tools as emerging platforms for cell mechanobiology,” IET Micro and Nano Letters, vol. 6, pp. 289, Editorial, 2011.
2010~2003 (Before Tenure-Track Appointment)
[J31] D.H. Kim, H.J. Lee, Y.K. Lee, J.M. Nam, and A. Levchenko, "Biomimetic nanopatterns as enabling tools for analysis and control of live cells," Advanced Materials, vol. 22, pp.4551-4566, 2010. Pubmed, Hubmed
[J30] K. Gupta*, D.H. Kim*, D. Ellison, C. Smith, A. Kundu, K.Y. Suh, J. Tuan, and A. Levchenko, “Lab-on-a-chip devices as an emerging platform for stem cell biology,” Lab on a Chip, vol. 10, pp.2019-2031, 2010. (*Equal contribution) Pubmed, Hubmed (Selected as one of the ten most accessed Lab on a Chip articles in August)
[J29] M.H. You, M.K. Kwak, D.H. Kim, K. Kim, A. Levchenko, D.Y. Kim, and K.Y. Suh, “Synergistically enhanced osteogenic differentiation of human mesenchymal stem cells by culture on nanostructured surfaces with induction media,” Biomacromolecules, vol. 11, pp.1856-1862, 2010. Pubmed, Hubmed
[J28] J. Park*, D.H. Kim*, G. Kim, Y.H. Kim, E. Choi, and A. Levchenko, “Simple haptotactic gradient generation within a triangular microfluidic channel,” Lab on a Chip, vol. 10, pp.2130-2138, 2010. (*Equal contribution) Pubmed, Article
[J27] D.H. Kim, E. Lipke, P. Kim, R. Cheong, S. Edmonds, M. Delannoy, K.Y. Suh, L.Tung, and A. Levchenko, "Nanoscale cues regulate the structure and function of macroscopic cardiac tissue constructs," Proceedings of National Academy of Sciences USA, vol.107, pp. 565-570, 2010. Pubmed, Hubmed (Highlighted in the National Institute of Biomedical Imaging and Bioengineering)
[J26] D.H. Kim, P. Wong, J.Y. Park, A. Levchenko, and Y. Sun#, "Microengineered platforms for cell mechanobiology," Annual Review of Biomedical Engineering, vol. 11, pp.203-233, 2009. (# denotes corresponding authors) Pubmed
[J25] D.H. Kim, C. Seo, K. Han, K. Kwon, A. Levchenko and K.Y. Suh, "Guided cell migration on microtextured substrates with variable local density and anisotropy," Advanced Functional Materials, vol.19, pp.1579-1586, 2009. (Featured as a Frontispiece) Pubmed, Hubmed
[J24] D.H. Kim, K. Han, K. Gupta, K. Kwon, K.Y. Suh, and A. Levchenko, "Mechanosensitivity of fibroblast cell shape and movement to anisotropic substratum topography gradients," Biomaterials, vol. 30, pp. 5433-5444, 2009. Pubmed, Hubmed
[J23] J. Kim, M. Junkin, D.H. Kim, S.L. Kwon, Y.S. Shin, P. K. Wong, and B. K. Gale, "Applications, techniques, and microfluidic interfacing for nanoscale biosensing," Microfluidics and Nanofluidics, vol. 7, pp. 149-167, 2009. http://dx.doi.org/10.1016/j.snb.2005.11.051
[J22] D.H. Kim, J.Y. Park, M.K. Kim, and K.S. Hong, "AFM-based identification of the dynamic properties of globular proteins: simulation study," Journal of Mechanical Science and Technology, vol. 22, no.11, pp. 2203-2212, 2008.
[J21] D.H. Kim, J.Y. Park, K.Y. Suh, P. Kim, S.K. Choi. S.C. Ryu, S.H. Park, S.H. Lee and B. Kim, "Fabrication of patterned micromuscles with high activity for powering biohybrid microdevices," Sensors and Actuators B, vol. 117, pp.391-400, 2006. http://dx.doi.org/10.1016/j.snb.2005.11.051
[J20] K.Y. Suh, H.E. Jeong, D.H. Kim, A.R. Singh, and E.S. Yoon, "Capillarity-assisted fabrication of nanostructures using less permeable mold for nanotribological applications," Journal of Applied Physics, vol.100, 2006. http://dx.doi.org/10.1063/1.2222071
[J19] S. Park, S. Ryu, S. Ryu, D.H. Kim, and B. Kim, “Contractile force measurements of cardiac myocytes using a micro-manipulation system,” Journal of Mechanical Science and Technology, vol.20, no.5, pp.668-674, 2006.
[J18] D.H. Kim, P. Kim, I.S. Song, J.M. Cha, S.H. Lee, B. Kim, and K.Y. Suh, "Guided three-dimensional growth of functional cardiomyocytes on polyethylene glycol nanostructures," Langmuir, vol.22, no.12, pp.5419-5426, 2006. > Pubmed, Hubmed
[J17] E.S. Yoon, R.A. Singh, H.S. Kong, B. Kim, D.H. Kim, H.E. Jeong, and K.Y. Suh, “Tribological properties of bio-mimetic nano-patterned polymeric surfaces on silicon wafer,” Tribology Letters, vol.21, pp.31-37, 034303, 2006. (the Society of Tribologists and Lubrication Engineers, Surface Engineering Best Paper Award) http://dx.doi.org/10.1007/s11249-005-9005-4
[J16] D.H. Kim, C.N. Hwang, Y. Sun, B. Kim, S.H. Lee, and B. Nelson, "Mechanical analysis of chorion softening in pre-hatching stages of zebrafish embryos," IEEE Transactions on Nanobioscience, vol.5, no.2, pp.89-94, 2006. Pubmed, Hubmed
[J15] D.H. Kim, K.S. Hong, and K.S. Yi, “Driving load estimation with the use of estimated turbine torque,” JSME International Journal Series C, vol.49, pp.163-171, 2006.
[J14] B. Kim, H.J. Kang, D.H. Kim, and J.O. Park, “A flexible microassembly system based on hybrid manipulation scheme for manufacturing photonics components," International Journal of Advanced
Manufacturing Technology, vol.28, pp.379-386, 2006.
[J13] J.Y. Park, S.M. Kim, D.H. Kim, B. Kim, S.J. Kwon, J.O. Park, and K.I. Lee, "Identification and control of a sensorized microgripper for micromanipulation," IEEE/ASME Transactions on Mechatronics, vol.10, no.5, pp.601-606, 2005. http://dx.doi.org/10.1109/TMECH.2005.856103
[J12] P.N. Kim, D.H. Kim, B. Kim, S.K. Choi, S.H. Lee, A. Khademhosseini, R. Langer, and K.Y. Suh, "Fabrication of nanostructures of poly(ethylene glycol) for application to protein adsorption and cell adhesion," Nanotechnology, vol.16, pp.2420-2426, 2005. http://dx.doi.org/10.1088/0957-4484/16/10/072
[J11] B. Kim, D.H. Kim, J.H. Jung, and J.O. Park, "A biomimetic undulatory tadpole robot using ionic polymer-metal composite actuators," Smart Materials and Structures, vol. 14, pp.1579-1585, 2005. http://dx.doi.org/10.1088/0964-1726/14/6/051
[J10] D.H. Kim, M.G. Lee, B. Kim, and Y. Sun, "A superelastic alloy microgripper with embedded electromagnetic actuators and piezoelectric sensors: a numerical and experimental study," Smart Materials and Structures, vol.14, pp.1265-1272, 2005. http://dx.doi.org/10.1088/0964-1726/14/6/019
[J9] D.H. Kim, Y. Sun, S. Yun, S.H. Lee, and B. Kim, "Investigating chorion softening of zebrafish embryos with a microrobotic force sensing system," Journal of Biomechanics, vol.38, no.6, pp.1359-1363, 2005. Pubmed, Hubmed
[J8] A. Haake, A. Neild, D.H. Kim, J.E. Ihm, Y. Sun, J. Dual, and B.K. Ju, "Manipulation of cells using an ultrasonic pressure field," Ultrasound in Medicine and Biology, vol.31, no.6, pp.857-864, 2005. Pubmed, Hubmed
[J7] D.H. Kim, B. Kim, B.K. Ju, and J.O. Park, “State of the art in nano-biomanipulation technologies,” Journal of Control, Automation and Systems Engineering, vol.11, no.4, pp.353-362, 2005.
[J6] D.H. Kim, B. Kim, and H.J. Kang, "Development of a piezoelectric polymer-based sensorized microgripper for micromanipulation and microassembly", Microsystem Technologies, vol.10, no.4, pp.275-280, 2004. http://dx.doi.org/10.1007/s00542-003-0330-y
[J5] D.H. Kim, B. Kim, and J.O. Park, “Implementation of a piezoresistive MEMS cantilever for nanoscale force
measurements in micro/nano robotic applications,” Journal of Mechanical Science and Technology, vol.18,
no.5, 789-797, 2004.
[J4] D.H. Kim, K.-J. Yang, K.S. Hong, J.O. Hahn, and K.I. Lee, “Smooth shift control of automatic transmissions
using a robust adaptive scheme with intelligent supervision,“ International Journal of Vehicle Design,
vol.32, no.3/4, pp.250-272, 2003.
[J3] J.Y. Park, D.H. Kim, T.S. Kim, B. Kim, and K.I. Lee “Design and performance evaluation of a 3-DOF
mobile microrobot for micro manipulation,” Journal of Mechanical Science and Technology, vol.17, no.9,
pp.1268-1275, 2003.
[J2] D.H. Kim, B. Kim, S. Youn, and H.J. Kang, “Cellular force sensing for force feedback-based biological cell
injection,” Transactions of the KSME, A, vol.27, no.12, pp.2079-2084, 2003.
[J1] D.H. Kim, B. Kim, H.J. Kang, and S.M. Kim, “Design, fabrication and performance evaluation of a
sensorized superelastic alloy microrobot gripper,” Transactions of the KSME, A, vol.27, no.10, pp.1772-
1777, 2003.
Books
E. Jabbari, D.H. Kim, L.P. Lee, A. Ghaemmaghami, and A. Khademhosseini, Editors, “Handbook of
Biomimetics and Bioinspiration,” World Scientific Publishers, 2014 Article
Book Chapters
[+] 2014
[+] 2013
[+] 2010
[+] 2008
[+] 2007
