Knight:DNA Spots

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
(Making Spots)
Current revision (09:29, 26 September 2007) (view source)
(Making Spots)
 
(14 intermediate revisions not shown.)
Line 3: Line 3:
**1% Cresol Red
**1% Cresol Red
**DNA (100 ng/μL)
**DNA (100 ng/μL)
-
**100% cotton, acid free thesis paper
+
**[http://www.crane.com/prdSell.aspx?Name=BT886S_ThesisPapers Crane & Co. 100% cotton, acid free thesis paper]
-
*For using spots:
+
*For using spots to transform:
**Harris Uni-Core Punch, 2mm and Olfa Cutting Mat
**Harris Uni-Core Punch, 2mm and Olfa Cutting Mat
-
**TE
+
**[[TE buffer|TE]]
**Competent Cells
**Competent Cells
Line 12: Line 12:
===Making Spots===
===Making Spots===
-
*Mix 1 part 1% Cresol Red with 4 parts 10-100 ng/μL DNA
+
[[Image:SpotGrid.jpg|thumb|left|Spotted Grid]]
 +
*Mix 1 part 1% Cresol Red with 4 parts DNA that is at least 100 ng/μL  
**''The exact amounts depend on how many 2 μL spots you plan to make''
**''The exact amounts depend on how many 2 μL spots you plan to make''
**''Using the excess of Cresol Red is helpful for when you transform, since you can visibly tell which cells have had DNA added and which have not''
**''Using the excess of Cresol Red is helpful for when you transform, since you can visibly tell which cells have had DNA added and which have not''
Line 21: Line 22:
===Using spots to transform E. coli===
===Using spots to transform E. coli===
 +
[[Image:CuttingMat&Punch.jpg|thumb|left|Olfa cutting mat and Uni-Core Punch]]
 +
[[Image:Spot.jpg|thumb|left|Punched Spot]]
*Cut out spot from surrounding paper using the Uni-Core Punch on the Olfa cutting mat
*Cut out spot from surrounding paper using the Uni-Core Punch on the Olfa cutting mat
-
*Soak spot in 20 μL 10:1 TE for 15 minutes.  
+
*Soak spot in 20 μL TE for 15 minutes.  
*Thaw competent cells on ice while spots soak
*Thaw competent cells on ice while spots soak
-
**''I used Top10 chemically competent cells''
+
**''I used [[TOP10 chemically competent cells]]''
*Add 5 μL of the TE the spot soaked in to 50 μL competent cells
*Add 5 μL of the TE the spot soaked in to 50 μL competent cells
**''Spots could also be directly added to cells. Soaking in TE is better though, since there is DNA left over if the transformation does not work for some reason.''
**''Spots could also be directly added to cells. Soaking in TE is better though, since there is DNA left over if the transformation does not work for some reason.''
*Incubate cells on ice for 30 minutes
*Incubate cells on ice for 30 minutes
*Heat shock cells at 43 °C
*Heat shock cells at 43 °C
-
**If cells are in individual tubes, heat shock for 30 seconds, if in a 96-well plate extend the heat shock to 1 minute
+
**If cells are in individual tubes, heat shock for 30 seconds. If cells are in a 96-well plate extend the heat shock to 1 minute.
*Incubate cells on ice for 2 minutes
*Incubate cells on ice for 2 minutes
-
*Add 200 μL SOC  
+
*Add 200 μL [[SOC]]
*Incubate at 37 °C for 2 hours
*Incubate at 37 °C for 2 hours
*Spread cells on previously made LB plates with proper antibiotic
*Spread cells on previously made LB plates with proper antibiotic
*Grow overnight at 37 °C
*Grow overnight at 37 °C
 +
 +
[[Category:Protocol]] [[Category:Escherichia coli]]

Current revision

Contents

Materials

Procedure

Making Spots

Spotted Grid
Spotted Grid
  • Mix 1 part 1% Cresol Red with 4 parts DNA that is at least 100 ng/μL
    • The exact amounts depend on how many 2 μL spots you plan to make
    • Using the excess of Cresol Red is helpful for when you transform, since you can visibly tell which cells have had DNA added and which have not
  • Make 2 μL spots on 100% cotton, acid free thesis paper
    • Place a second sheet of paper under the one to be spotted to keep it free from contamination
  • Leave spots to dry at room temperature. This takes between 45 minutes and an hour
  • Once dry, spots can be used right away or stored at -20 °C. To store - place the spotted paper between two others to protect it.

Using spots to transform E. coli

Olfa cutting mat and Uni-Core Punch
Olfa cutting mat and Uni-Core Punch
Punched Spot
Punched Spot
  • Cut out spot from surrounding paper using the Uni-Core Punch on the Olfa cutting mat
  • Soak spot in 20 μL TE for 15 minutes.
  • Thaw competent cells on ice while spots soak
  • Add 5 μL of the TE the spot soaked in to 50 μL competent cells
    • Spots could also be directly added to cells. Soaking in TE is better though, since there is DNA left over if the transformation does not work for some reason.
  • Incubate cells on ice for 30 minutes
  • Heat shock cells at 43 °C
    • If cells are in individual tubes, heat shock for 30 seconds. If cells are in a 96-well plate extend the heat shock to 1 minute.
  • Incubate cells on ice for 2 minutes
  • Add 200 μL SOC
  • Incubate at 37 °C for 2 hours
  • Spread cells on previously made LB plates with proper antibiotic
  • Grow overnight at 37 °C
Personal tools