Kobe:Publications

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2008

1. Mueller DS, Kampmann T, Yennamalli R, Young PR, Kobe B, and Mark AE. Histidine protonation and the activation of viral fusion proteins. Biochem Soc Trans. 2008 Feb;36(Pt 1):43-5. DOI:10.1042/BST0360043 |

2007

2. Cowieson NP, Miles AJ, Robin G, Forwood JK, Kobe B, Martin JL, and Wallace BA. Evaluating protein:protein complex formation using synchrotron radiation circular dichroism spectroscopy. Proteins. 2008 Mar;70(4):1142-6. DOI:10.1002/prot.21631 |
3. Thakur AS, Robin G, Guncar G, Saunders NF, Newman J, Martin JL, and Kobe B. Improved success of sparse matrix protein crystallization screening with heterogeneous nucleating agents. PLoS One. 2007 Oct 31;2(10):e1091. DOI:10.1371/journal.pone.0001091 |
4. Forwood JK, Thakur AS, Guncar G, Marfori M, Mouradov D, Meng W, Robinson J, Huber T, Kellie S, Martin JL, Hume DA, and Kobe B. Structural basis for recruitment of tandem hotdog domains in acyl-CoA thioesterase 7 and its role in inflammation. Proc Natl Acad Sci U S A. 2007 Jun 19;104(25):10382-7. DOI:10.1073/pnas.0700974104 |
5. Schmidt SA, Williams SJ, Wang CI, Sornaraj P, James B, Kobe B, Dodds PN, Ellis JG, and Anderson PA. Purification of the M flax-rust resistance protein expressed in Pichia pastoris. Plant J. 2007 Jun;50(6):1107-17. DOI:10.1111/j.1365-313X.2007.03104.x |
6. Guncar G, Wang CI, Forwood JK, Teh T, Catanzariti AM, Ellis JG, Dodds PN, and Kobe B. The use of Co2+ for crystallization and structure determination, using a conventional monochromatic X-ray source, of flax rust avirulence protein. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Mar 1;63(Pt 3):209-13. DOI:10.1107/S1744309107004599 |
7. Wang CI, Guncar G, Forwood JK, Teh T, Catanzariti AM, Lawrence GJ, Loughlin FE, Mackay JP, Schirra HJ, Anderson PA, Ellis JG, Dodds PN, and Kobe B. Crystal structures of flax rust avirulence proteins AvrL567-A and -D reveal details of the structural basis for flax disease resistance specificity. Plant Cell. 2007 Sep;19(9):2898-912. DOI:10.1105/tpc.107.053611 |

2006

8. Bogoyevitch MA and Kobe B. Uses for JNK: the many and varied substrates of the c-Jun N-terminal kinases. Microbiol Mol Biol Rev. 2006 Dec;70(4):1061-95. DOI:10.1128/MMBR.00025-06 |
9. Puri M, Robin G, Cowieson N, Forwood JK, Listwan P, Hu SH, Guncar G, Huber T, Kellie S, Hume DA, Kobe B, and Martin JL. Focusing in on structural genomics: the University of Queensland structural biology pipeline. Biomol Eng. 2006 Dec;23(6):281-9. DOI:10.1016/j.bioeng.2006.09.002 |
10. Kampmann T, Mueller DS, Mark AE, Young PR, and Kobe B. The Role of histidine residues in low-pH-mediated viral membrane fusion. Structure. 2006 Oct;14(10):1481-7. DOI:10.1016/j.str.2006.07.011 |
11. Kurz M, Cowieson NP, Robin G, Hume DA, Martin JL, Kobe B, and Listwan P. Incorporating a TEV cleavage site reduces the solubility of nine recombinant mouse proteins. Protein Expr Purif. 2006 Nov;50(1):68-73. DOI:10.1016/j.pep.2006.05.006 |
12. Dodds PN, Lawrence GJ, Catanzariti AM, Teh T, Wang CI, Ayliffe MA, Kobe B, and Ellis JG. Direct protein interaction underlies gene-for-gene specificity and coevolution of the flax resistance genes and flax rust avirulence genes. Proc Natl Acad Sci U S A. 2006 Jun 6;103(23):8888-93. DOI:10.1073/pnas.0602577103 |
13. Serek R, Forwood JK, Hume DA, Martin JL, and Kobe B. Crystallization of the C-terminal domain of the mouse brain cytosolic long-chain acyl-CoA thioesterase. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Feb 1;62(Pt 2):133-5. DOI:10.1107/S1744309106000030 |
14. Cowieson NP, Wensley B, Listwan P, Hume DA, Kobe B, and Martin JL. An automatable screen for the rapid identification of proteins amenable to refolding. Proteomics. 2006 Mar;6(6):1750-7. DOI:10.1002/pmic.200500056 |
15. Brinkworth RI, Munn AL, and Kobe B. Protein kinases associated with the yeast phosphoproteome. BMC Bioinformatics. 2006 Jan 31;7:47. DOI:10.1186/1471-2105-7-47 |
16. Mouradov D, Craven A, Forwood JK, Flanagan JU, García-Castellanos R, Gomis-Rüth FX, Hume DA, Martin JL, Kobe B, and Huber T. Modelling the structure of latexin-carboxypeptidase A complex based on chemical cross-linking and molecular docking. Protein Eng Des Sel. 2006 Jan;19(1):9-16. DOI:10.1093/protein/gzi070 |

2005

17. Listwan P, Cowieson N, Kurz M, Hume DA, Martin JL, and Kobe B. Modification of recombinatorial cloning for small affinity tag fusion protein construct generation. Anal Biochem. 2005 Nov 15;346(2):327-9. DOI:10.1016/j.ab.2005.06.016 |
18. Kobe B, Kampmann T, Forwood JK, Listwan P, and Brinkworth RI. Substrate specificity of protein kinases and computational prediction of substrates. Biochim Biophys Acta. 2005 Dec 30;1754(1-2):200-9. DOI:10.1016/j.bbapap.2005.07.036 |
19. Cowieson NP, Listwan P, Kurz M, Aagaard A, Ravasi T, Wells C, Huber T, Hume DA, Kobe B, and Martin JL. Pilot studies on the parallel production of soluble mouse proteins in a bacterial expression system. J Struct Funct Genomics. 2005;6(1):13-20. DOI:10.1007/s10969-005-0462-7 |
20. Ren G, Wang J, Brinkworth R, Winsor B, Kobe B, and Munn AL. Verprolin cytokinesis function mediated by the Hof one trap domain. Traffic. 2005 Jul;6(7):575-93. DOI:10.1111/j.1600-0854.2005.00300.x |
21. Fontes MR, Teh T, Riell RD, Park SB, Standaert RF, and Kobe B. Crystallization and preliminary X-ray diffraction analysis of importin-alpha complexed with NLS peptidomimetics. Biochim Biophys Acta. 2005 Jun 15;1750(1):9-13. DOI:10.1016/j.bbapap.2005.03.014 |
22. Aagaard A, Listwan P, Cowieson N, Huber T, Ravasi T, Wells CA, Flanagan JU, Kellie S, Hume DA, Kobe B, and Martin JL. An inflammatory role for the mammalian carboxypeptidase inhibitor latexin: relationship to cystatins and the tumor suppressor TIG1. Structure. 2005 Feb;13(2):309-17. DOI:10.1016/j.str.2004.12.013 |