Koch Lab:Data/MT Gliding Assay Readme File

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This is the readme file for kochlab gliding assay and microtubule tracking data.
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 To the extent possible under law, <a href="http://openwetware.org/wiki/Koch_Lab" rel="dct:publisher"><span property="dct:title">Steven J. Koch and other KochLab members</span></a>
 has waived all copyright and related or neighboring rights to
 <span property="dct:title">KochLab Data</span>.

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Credits

Raw data acquired by Andy Maloney. Tracking software by Larry Herskowitz and Steve Koch. Tracking automation by Larry Herskowitz. Data analysis and interpretation by Andy Maloney, Larry Herskowitz, Steve Koch. Kinesin-1 provided by Haiqing Liu (LANL).

Data are licensed CC0, as noted above. You are not required, but if possible it would be cool if you give credit to us in any derived work. Also, we might enjoy working with you if it is productive. Contact info can be found here: Koch_Lab:Contact.

Software

Our software will all be open-source. However, currently we have not yet gone through the steps to make sourceforge projects. Below is all of the software we used to analyze images, but it will probably be difficult to use without some instructions (which we haven't yet written). Unfortunately, some of even the compiled versions will require a NI-Vision license. Whereas all the source code will require LabVIEW development platform.

Microtubule image tracking, automated

  • LabVIEW 7.1 executable, installer, and source code (.llb library file) available here: http://kochlab.org/files/Software/Microtubule%20Gliding%20Assay%20Software/Automatic%20microtubule%20tracking
    • The .zip file will give you everything
    • The .exe file will run if you have LabVIEW 7.1 and NI Vision 7 installed on your machine.
    • The installer will give you the necessary run-time engines. However, you will need to purchase a pricey NI Vision license to run the installed software.
    • If you have LV 7.1 and NI Vision, the .llb file will provide you the source code.
    • This is the May 14 version of software.
  • Test files available on request, and will be public once we learn how to share our raw image data.

Track smoothing and speed calculation, automated

  • LabVIEW 7.1 executable, installer, and source code (.llb library file) available here: http://kochlab.org/files/Software/Microtubule%20Gliding%20Assay%20Software/Manual%20tracking%20and%20automatic%20track%20speed%20analysis
    • The .zip file will give you everything
    • The .exe file will run if you have LabVIEW 7.1 and NI Vision 7 installed on your machine.
    • The installer will give you the necessary run-time engines. However, you will need to purchase a pricey NI Vision license to run the installed software.
    • If you have LV 7.1 and NI Vision, the .llb file will provide you the source code.
    • This is the May 14 version of software.
  • Test files available on request, and will be public once we learn how to share our raw image data.

Group speed analysis, automated

Related Publications

Related Notebook and Other Postings

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