Koop:cGRASP pubs

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cGRASP publications (Koop lab)

Methods and Resources

von Schalburg KR, Rise ML, Cooper GA, Brown GD, Gibbs AR, Nelson CC, Davidson WS, and Koop BF. Fish and chips: various methodologies demonstrate utility of a 16,006-gene salmonid microarray. BMC Genomics. 2005 Sep 15;6:126. DOI:10.1186/1471-2164-6-126 | Ng SH, Artieri CG, Bosdet IE, Chiu R, Danzmann RG, Davidson WS, Ferguson MM, Fjell CD, Hoyheim B, Jones SJ, de Jong PJ, Koop BF, Krzywinski MI, Lubieniecki K, Marra MA, Mitchell LA, Mathewson C, Osoegawa K, Parisotto SE, Phillips RB, Rise ML, von Schalburg KR, Schein JE, Shin H, Siddiqui A, Thorsen J, Wye N, Yang G, and Zhu B. A physical map of the genome of Atlantic salmon, Salmo salar. Genomics. 2005 Oct;86(4):396-404. DOI:10.1016/j.ygeno.2005.06.001 | Thorsen J, Zhu B, Frengen E, Osoegawa K, de Jong PJ, Koop BF, Davidson WS, and Høyheim B. A highly redundant BAC library of Atlantic salmon (Salmo salar): an important tool for salmon projects. BMC Genomics. 2005 Apr 4;6:50. DOI:10.1186/1471-2164-6-50 | Rise ML, von Schalburg KR, Brown GD, Mawer MA, Devlin RH, Kuipers N, Busby M, Beetz-Sargent M, Alberto R, Gibbs AR, Hunt P, Shukin R, Zeznik JA, Nelson C, Jones SR, Smailus DE, Jones SJ, Schein JE, Marra MA, Butterfield YS, Stott JM, Ng SH, Davidson WS, and Koop BF. Development and application of a salmonid EST database and cDNA microarray: data mining and interspecific hybridization characteristics. Genome Res. 2004 Mar;14(3):478-90. DOI:10.1101/gr.1687304 |

Other cGRASP research

Morrison RN, Cooper GA, Koop BF, Rise ML, Bridle AR, Adams MB, and Nowak BF. Transcriptome profiling the gills of amoebic gill disease (AGD)-affected Atlantic salmon (Salmo salar L.): a role for tumor suppressor p53 in AGD pathogenesis?. Physiol Genomics. 2006 Jun 16;26(1):15-34. DOI:10.1152/physiolgenomics.00320.2005 | Artieri CG, Mitchell LA, Ng SH, Parisotto SE, Danzmann RG, Hoyheim B, Phillips RB, Morasch M, Koop BF, and Davidson WS. Identification of the sex-determining locus of Atlantic salmon (Salmo salar) on chromosome 2. Cytogenet Genome Res. 2006;112(1-2):152-9. DOI:10.1159/000087528 | von Schalburg KR, McCarthy SP, Rise ML, Hutson JC, Davidson WS, and Koop BF. Expression of morphogenic genes in mature ovarian and testicular tissues: potential stem-cell niche markers and patterning factors. Mol Reprod Dev. 2006 Feb;73(2):142-52. DOI:10.1002/mrd.20359 | Hunt PN, Wilson MD, von Schalburg KR, Davidson WS, and Koop BF. Expression and genomic organization of zonadhesin-like genes in three species of fish give insight into the evolutionary history of a mosaic protein. BMC Genomics. 2005 Nov 22;6:165. DOI:10.1186/1471-2164-6-165 | von Schalburg KR, Rise ML, Brown GD, Davidson WS, and Koop BF. A comprehensive survey of the genes involved in maturation and development of the rainbow trout ovary. Biol Reprod. 2005 Mar;72(3):687-99. DOI:10.1095/biolreprod.104.034967 | Rise ML, Jones SR, Brown GD, von Schalburg KR, Davidson WS, and Koop BF. Microarray analyses identify molecular biomarkers of Atlantic salmon macrophage and hematopoietic kidney response to Piscirickettsia salmonis infection. Physiol Genomics. 2004 Dec 15;20(1):21-35. DOI:10.1152/physiolgenomics.00036.2004 | McKay SJ, Trautner J, Smith MJ, Koop BF, and Devlin RH. Evolution of duplicated growth hormone genes in autotetraploid salmonid fishes. Genome. 2004 Aug;47(4):714-23. DOI:10.1139/g04-018 |