Kristoffer Chin: Week 13: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
 
(4 intermediate revisions by the same user not shown)
Line 2: Line 2:
*Number of Errors:1778
*Number of Errors:1778
*GEX file was made:
*GEX file was made:
**[[Media:TC AT txt.gex]]
**[[Media:TC AT txt.gex|Week 13 GEX file]]


*MAPPFinder was able to locate the genes and was grouped into 2 criterions
*MAPPFinder was able to locate the genes and was grouped into 2 criterions
Line 8: Line 8:
** [[Media:Results for TCAT-Criterion1-GO.txt| Results part 2]]
** [[Media:Results for TCAT-Criterion1-GO.txt| Results part 2]]
*These TXT files were opened on Microsoft Excel and was filtered
*These TXT files were opened on Microsoft Excel and was filtered
===Criterion 0===
*terpenoid metabolic process
*cell surface receptor linked signal transduction
*anchored to plasma membrane
*response to starvation
*intrinsic to plasma membrane
*isoprenoid metabolic process
*serine family amino acid metabolic process
*response to nutrient levels
*response to salicylic acid stimulus
*response to extracellular stimulus
*protein binding
*protein import
*mRNA processing
*response to jasmonic acid stimulus
*methyltransferase activity
*transferase activity, transferring one-carbon groups
*protein targeting
**[[Media:Mpina Results for TCAT-Criterion0-GO.txt|Criterion 0 Filtered]]
**[[Media:Mpina Results for TCAT-Criterion0-GO.txt|Criterion 0 Filtered]]
===Criterion 1===
*extracellular region
*lipid catabolic process
*chromatin modification
*establishment or maintenance of chromatin architecture
*glutamine family amino acid metabolic process
*covalent chromatin modification
*pyridoxal phosphate binding
*regulation of gene expression, epigenetic
*regulation of gene expression
*hydrolase activity, acting on ester bonds
*chromosome organization
*regulation of macromolecule metabolic process
*jasmonic acid mediated signaling pathway
*two-component response regulator activity
*nucleosome
*vitamin binding
*regulation of transcription
*histone modification
*histone-lysine N-methyltransferase activity
*protein-lysine N-methyltransferase activity
*lysine N-methyltransferase activity
*DNA binding
**[[Media:Mpina Results for TCAT-Criterion1-GO.txt|Criterion 1 Filtered]]
**[[Media:Mpina Results for TCAT-Criterion1-GO.txt|Criterion 1 Filtered]]


===Powerpoint Presentation===
===Powerpoint Presentation===


[[Media:Interpretation of Arabidopsis Thaliana and T Caerulesencs from.ppt]]
[[Media:Interpretation of Arabidopsis Thaliana and T Caerulesencs from.ppt|DNA Microarray Presentation]]






{{Kristoffer T. Chin}}
{{Kristoffer T. Chin}}

Latest revision as of 17:40, 27 April 2010

Entry

  • MAPPFinder was able to locate the genes and was grouped into 2 criterions
  • These TXT files were opened on Microsoft Excel and was filtered

Criterion 0

  • terpenoid metabolic process
  • cell surface receptor linked signal transduction
  • anchored to plasma membrane
  • response to starvation
  • intrinsic to plasma membrane
  • isoprenoid metabolic process
  • serine family amino acid metabolic process
  • response to nutrient levels
  • response to salicylic acid stimulus
  • response to extracellular stimulus
  • protein binding
  • protein import
  • mRNA processing
  • response to jasmonic acid stimulus
  • methyltransferase activity
  • transferase activity, transferring one-carbon groups
  • protein targeting


Criterion 1

  • extracellular region
  • lipid catabolic process
  • chromatin modification
  • establishment or maintenance of chromatin architecture
  • glutamine family amino acid metabolic process
  • covalent chromatin modification
  • pyridoxal phosphate binding
  • regulation of gene expression, epigenetic
  • regulation of gene expression
  • hydrolase activity, acting on ester bonds
  • chromosome organization
  • regulation of macromolecule metabolic process
  • jasmonic acid mediated signaling pathway
  • two-component response regulator activity
  • nucleosome
  • vitamin binding
  • regulation of transcription
  • histone modification
  • histone-lysine N-methyltransferase activity
  • protein-lysine N-methyltransferase activity
  • lysine N-methyltransferase activity
  • DNA binding

Powerpoint Presentation

DNA Microarray Presentation


BIOL398-01: Bioinformatics Lab

  • Lab Journal
Kristoffer Chin: Week 2 Kristoffer Chin: Week 6 Kristoffer Chin: Week 11
Kristoffer Chin: Week 3 Kristoffer Chin: Week 7 Kristoffer Chin: Week 12
Kristoffer Chin: Week 4 Kristoffer Chin: Week 8 Kristoffer Chin: Week 13
Kristoffer Chin: Week 5 Kristoffer Chin: Week 9 Kristoffer Chin: Week 14


  • Shared Journal
BIOL398-01/S10:Class Journal Week 2 BIOL398-01/S10:Class Journal Week 6 BIOL398-01/S10:Class Journal Week 11
BIOL398-01/S10:Class Journal Week 3 BIOL398-01/S10:Class Journal Week 7 BIOL398-01/S10:Class Journal Week 12
BIOL398-01/S10:Class Journal Week 4 BIOL398-01/S10:Class Journal Week 8 BIOL398-01/S10:Class Journal Week 13
BIOL398-01/S10:Class Journal Week 5 BIOL398-01/S10:Class Journal Week 9 BIOL398-01/S10:Class Journal Week 14


  • Assignments
BIOL398-01/S10:Week 2 BIOL398-01/S10:Week 6 BIOL398-01/S10:Week 11
BIOL398-01/S10:Week 3 BIOL398-01/S10:Week 7 BIOL398-01/S10:Week 12
BIOL398-01/S10:Week 4 BIOL398-01/S10:Week 8 BIOL398-01/S10:Week 13
BIOL398-01/S10:Week 5 BIOL398-01/S10:Week 9 BIOL398-01/S10:Week 14

Links

Retrieved from "https://openwetware.org/mediawiki/index.php?title=Kristoffer_Chin:_Week_13&oldid=410269"