LaTeX

Why use LaTeX?

1. It makes reuse of figures, tables and equations across papers, presentations and posters very easy. For some, this is the main motivation of using LaTeX. .eps files scale well so you can just include the same figure in papers and posters and you don't have to (usually) worry about bizarre scaling effects. Equations are even nicer.
2. LaTeX is free. So if you can't afford Microsoft Office software, this is a good option.
3. LaTeX works with BibTeX to make doing references very easy. Again, BibTeX is free unlike Endnote which is a common software package for use with Microsoft Office.
   • There's an online tool for creating a BibTeX entry from a PubMed search query.
4. There's lots of online information about how to do stuff in LaTeX.

There is a large learning curve associated with using LaTeX. So those new to LaTeX would benefit from either giving themselves extra time to prepare their first LaTeX document or having a friend who knows LaTeX and who doesn't mind answering a lot of questions.

LaTeX on OpenWetWare

A formal disadvantage was that collaboration and editing tools among multiple users was lacking. But now there are tools on OWW to connect wiki technology with LaTeX. Both WikiTex and LatexDoc are installed on OWW. WikiTex allows embedding parts of TeX formatting like diagrams and things into wiki pages. LatexDoc allows collaborating on entire LaTeX documents on the wiki.

more documentation needed here

Some LaTeX related files:

• Bibtex: collection of bibtex style files

Martin Jambon is working on an extension to convert bibtex entries into a format compatible with the biblio extension. You can try it here.

Austin Che wrote an extension to allow collaborative writing of latex docs on OpenWetWare.

Why not use LaTeX

1. There is a large learning curve associated with the language.
2. It is not WYSIWYG.
   • I've never used it but Lyx claims to be a WYSIWYG editor for LaTeX --Jgritton 13:13, 11 Aug 2005 (EDT)
   • preview-latex and AUCTeX for Emacs is excellent for looking at your figures inside Emacs (pretty much WYSIWYG).
3. Often in writing scientific literature, whether an internal report or thesis proposal to publishing a paper, you will be working with people that don't use LaTex. This is the primary disadvantage.

LaTeX software packages

TeXShop is a nice frontend for using LaTeX on MacOSX. Read through the site carefully for instructions on how to install both TeXShop and TeXLive-teTeX (the backend).

BibDesk is a nice frontend for managing your library of references (ie your BibTeX library). It even autofiles your library of PDFs which makes maintaining and searching your collection of papers much easier than before.

Beamer is a LaTeX class that allows you to create a beamer presentation. It can also be used to create slides. It behaves similarly to other packages like Prosper, but has the advantage that it works together directly with pdflatex, but also with dvips.

Useful links

General

LaTeX project site

CTAN

Papers

• A LaTeX template for writing thesis proposals
• Some journals accept papers in LaTeX format. Check ahead of time.

Posters

Here is a link with a source file for making posters in LaTeX. The cls file can be modified to alter the style of the poster.

Talks

Here is a link with general information about LaTeX presentations.

PPower4 is software that permits you to add powerpoint-like slide transitions to LaTeX presentations. It generally requires that you use Adobe Acrobat reader to view your presentation with effects.