Lab 1

lab 1

Title: Eau that smell A synthetic biology lab for high school using BioBuilder

Objectives

By the conclusion of this laboratory investigation, the student will be able to:

• Explain how synthetic biology as an engineering discipline differs from genetic engineering.
• Explain the population growth curve of bacteria.
• Define and properly use synthetic biology terms: parts, device, inverter.
• Define and properly use molecular genetics terms: promoter, ribosome binding site, open reading frame, terminator, plasmid,
• Culture bacteria using proper microbiology methods.
• Measure the growth of a bacterial population.

Introduction

For the 2006 iGEM iGEMcompetition, MIT students designed eau d’ e coli, E. coli that smell like bananas when their population is in the stationary phase. They did this by inserting device that contains a stationary phase sensitive promoter coupled to a banana smell device, a device that contains a ribosome binding site (RBS), an open reading frame (ORF) that codes for the ATF1 enzyme and terminator sequences. The ATF1 enzyme converts isoamyl alcohol to isoamyl acetate, the molecule that gives bananas their characteristic smell.

It has been suggested that a device that generates the banana smell during the bacteria’s log (or exponential) phase of population growth will be helpful. There are two ways to accomplish this. Both methods will continue to use the banana smell device but alter the function of the promoter. One method involves coupling the banana smell device to a new part, a log phase promoter. The other method involves using the same promoter but adding an inverter. Synthetic biologists have constructed these devices for us and transformed bacteria with them.

We have been sent three different E. coli colonies. Each contains a different device :

1. The original eau d’ Coli device
2. The banana smell generator coupled to the log phase promoter
3. The original eau d’ Coli device but with an inverter added.

Our task will be to grow these bacterial populations and test for the banana smell as the population moves through the log phase and into the stationary phase. We will determine the population growth by using a Spec 20 to measure the density of the bacteria in liquid culture. As the population increases we can assess the increasing banana smell.

Data Table

In your lab notebook, you will need to construct a data table as shown below for each of the samples. (These may be provided)

SAMPLE________________________________

Time	OD420	OD550	OD600	group cells/ml	class mean cells/ml	Banana smell (+/-)
Initial
20 minutes
40 minutes
60 minutes
80 minutes
120 minutes

Procedure

Part 1: Preparing the bacterial cultures:

Part 2: Measuring bacterial population growth:

Links

1. Synthetic Biology and the High School Curriculum
2. Lab 1
3. Lab 1 teacher notes
4. Lab 2
5. Lab 2 teacher notes
6. lab report rubric
7. Synthetic bio essay
8. Essay rubric
9. Resources
10. National Science Engineering Standards

parts device