LeBauer:Software/Statistics: Difference between revisions

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==R==
===R packages===
*[http://had.co.nz/ggplot2/ '''ggplot2'''] simplifies graphical data visualization and presentation
*'''coda''' tools for analysis of mcmc chains generated by JAGS
*'''randtoolbox''' has function for generating pseudo-random samples; the [http://en.wikipedia.org/wiki/Halton_sequence halton()] function produces a pseudo-random over-dispersed matrix that I use to sampling from the distributions of ~20 parameters used in ensemble runs of the [http://128.174.125.122/wiki/index.php/ED2_Documentation ED2 ecosystem model].
</pre>
==JAGS==
=====Installing Jags packages (rjags and R2jags) in R=====
<pre>
wget http://cran.r-project.org/src/contrib/R2jags_0.01-26.tar.gz
sudo R CMD INSTALL R2jags_0.01-26.tar.gz
wget http://cran.r-project.org/src/contrib/rjags_1.0.3-11.tar.gz
sudo R CMD INSTALL rjags_1.0.3-11.tar.gz
</pre>

Latest revision as of 09:53, 10 November 2010


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