LeBauer:Software/Statistics: Difference between revisions
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==R== | ==R== | ||
===R packages=== | ===R packages=== | ||
*[http://had.co.nz/ggplot2/ ggplot2] simplifies graphical data visualization and presentation | *[http://had.co.nz/ggplot2/ '''ggplot2'''] simplifies graphical data visualization and presentation | ||
*coda | *'''coda''' tools for analysis of mcmc chains generated by JAGS | ||
*randtoolbox has function for generating pseudo-random samples; the [http://en.wikipedia.org/wiki/Halton_sequence halton()] function produces a pseudo-random over-dispersed matrix that I use to sampling from the distributions of ~20 parameters used in ensemble runs of the [http://128.174.125.122/wiki/index.php/ED2_Documentation ED2 ecosystem model]. | *'''randtoolbox''' has function for generating pseudo-random samples; the [http://en.wikipedia.org/wiki/Halton_sequence halton()] function produces a pseudo-random over-dispersed matrix that I use to sampling from the distributions of ~20 parameters used in ensemble runs of the [http://128.174.125.122/wiki/index.php/ED2_Documentation ED2 ecosystem model]. | ||
</pre> | </pre> | ||
Revision as of 13:38, 14 July 2010
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R
R packages
- ggplot2 simplifies graphical data visualization and presentation
- coda tools for analysis of mcmc chains generated by JAGS
- randtoolbox has function for generating pseudo-random samples; the halton() function produces a pseudo-random over-dispersed matrix that I use to sampling from the distributions of ~20 parameters used in ensemble runs of the ED2 ecosystem model.
JAGS
Installing Jags packages (rjags and R2jags) in R
wget http://cran.r-project.org/src/contrib/R2jags_0.01-26.tar.gz sudo R CMD INSTALL R2jags_0.01-26.tar.gz wget http://cran.r-project.org/src/contrib/rjags_1.0.3-11.tar.gz sudo R CMD INSTALL rjags_1.0.3-11.tar.gz