LeBauer:Software/Statistics: Difference between revisions
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follow the instructions to install Kepler, if installation does not begin, double-click on the file | follow the instructions to install Kepler, if installation does not begin, double-click on the file | ||
after installation, need to download jar file for jdbc java connection | after installation, to use mysql with Open Database Connection actor, ''may'' need to download jar file for jdbc java connection | ||
<pre> | <pre> | ||
wget http://www.mysql.com/get/Downloads/Connector-J/mysql-connector-java-5.1.13.tar.gz/from/ftp://mirror.anl.gov/pub/mysql/ | wget http://www.mysql.com/get/Downloads/Connector-J/mysql-connector-java-5.1.13.tar.gz/from/ftp://mirror.anl.gov/pub/mysql/ | ||
tar - | tar -zxf mysql-connector-java-5.1.13.tar.gz | ||
cp mysql-connector-java-5.1.13. | cp mysql-connector-java-5.1.13/mysql-connector-java-5.1.13-bin.jar Kepler-2.0/ | ||
</pre> | </pre> | ||
Revision as of 13:41, 13 August 2010
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R
R packages
- ggplot2 simplifies graphical data visualization and presentation
- coda tools for analysis of mcmc chains
- randtoolbox has function for generating pseudo-random samples; the halton() function produces a pseudo-random over-dispersed matrix that I use to sampling from the distributions of ~20 parameters used in ensemble runs of the ED2 ecosystem model.
- adimpro for image analysis
##example R code for extracting jpg to N x M x 3 matrix
##much slower than Matlab imread()
a <- read.image('file.jpg')
b <- extract.image(a)
red <- b[,,1]
green <- b[,,2]
blue <- b[,,3]
JAGS
Installing Jags packages (rjags and R2jags) in R
wget http://cran.r-project.org/src/contrib/R2jags_0.01-26.tar.gz sudo R CMD INSTALL R2jags_0.01-26.tar.gz wget http://cran.r-project.org/src/contrib/rjags_1.0.3-11.tar.gz sudo R CMD INSTALL rjags_1.0.3-11.tar.gz
Kepler
download Kepler
wget https://code.kepler-project.org/code/kepler/releases/installers/2.0/Kepler-2.0-linux.jar Kepler-2.0-linux.jar
follow the instructions to install Kepler, if installation does not begin, double-click on the file
after installation, to use mysql with Open Database Connection actor, may need to download jar file for jdbc java connection
wget http://www.mysql.com/get/Downloads/Connector-J/mysql-connector-java-5.1.13.tar.gz/from/ftp://mirror.anl.gov/pub/mysql/ tar -zxf mysql-connector-java-5.1.13.tar.gz cp mysql-connector-java-5.1.13/mysql-connector-java-5.1.13-bin.jar Kepler-2.0/
