Li Lab:Softwares

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
Line 6: Line 6:
-
*Cis-regulatory Element Annotation System (CEAS)
+
*[http://ceas.cbi.pku.edu.cn/ Cis-regulatory Element Annotation System (CEAS)]
An integrated webserver for analyzing ChIP-chip data.
An integrated webserver for analyzing ChIP-chip data.
-
* extreme MApping of OligoNucleotides (xMAN)
+
* [http://chip.dfci.harvard.edu/~wli/xMAN/ extreme MApping of OligoNucleotides (xMAN)]
A simple and efficient method for the mapping of millions of query oligonucleotide fragments to the subject genome of any given length, at least an order of magnitude faster than other popular existing tools.
A simple and efficient method for the mapping of millions of query oligonucleotide fragments to the subject genome of any given length, at least an order of magnitude faster than other popular existing tools.
* Model-based Analysis of ChIP-sequencing (MACS)
* Model-based Analysis of ChIP-sequencing (MACS)

Revision as of 15:20, 14 November 2007

Home        Member        Publication        Collaboration        Software        Position        Contact       


A model-based algorithm for finding enriched regions in ChIP-Chip experiments.


An integrated webserver for analyzing ChIP-chip data.


A simple and efficient method for the mapping of millions of query oligonucleotide fragments to the subject genome of any given length, at least an order of magnitude faster than other popular existing tools.


  • Model-based Analysis of ChIP-sequencing (MACS)
Personal tools