Li Lab:Softwares

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* TBA
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Phylogeny Based on Whole Genome as inferred from Complete Information Set Analysis
*[http://chip.dfci.harvard.edu/~wli/MAT/ Model-based Analysis of Tiling-array (MAT)]
*[http://chip.dfci.harvard.edu/~wli/MAT/ Model-based Analysis of Tiling-array (MAT)]
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A model-based algorithm for finding enriched regions in ChIP-Chip experiments.
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A model-based algorithm for finding enriched regions in ChIP-Chip experiments
*[http://ceas.cbi.pku.edu.cn/ Cis-regulatory Element Annotation System (CEAS)]
*[http://ceas.cbi.pku.edu.cn/ Cis-regulatory Element Annotation System (CEAS)]
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An integrated webserver for analyzing ChIP-chip data.
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An integrated webserver for analyzing ChIP-chip data
* [http://chip.dfci.harvard.edu/~wli/xMAN/ extreme MApping of OligoNucleotides (xMAN)]
* [http://chip.dfci.harvard.edu/~wli/xMAN/ extreme MApping of OligoNucleotides (xMAN)]
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A intuitive and efficient algorithm for the mapping of millions of query oligonucleotide fragments to the genome of any given length, at least an order of magnitude faster than other popular existing tools.
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A intuitive and efficient algorithm for the mapping of millions of query oligonucleotide fragments to the genome of any given length, at least an order of magnitude faster than other popular existing tools
* Model-based Analysis of ChIP-sequencing (MACS)
* Model-based Analysis of ChIP-sequencing (MACS)
TBA
TBA

Revision as of 14:56, 19 November 2007

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  • TBA

Phylogeny Based on Whole Genome as inferred from Complete Information Set Analysis

A model-based algorithm for finding enriched regions in ChIP-Chip experiments


An integrated webserver for analyzing ChIP-chip data


A intuitive and efficient algorithm for the mapping of millions of query oligonucleotide fragments to the genome of any given length, at least an order of magnitude faster than other popular existing tools


  • Model-based Analysis of ChIP-sequencing (MACS)
TBA
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