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* [http://code.google.com/p/danpos/ DANPOS: Dynamic Analysis of Nucleosome
DANPOS is developed for comparison
* [http://code.google.com/p/danpos/ DANPOS: Dynamic Analysis of Nucleosome and Occupancy by Sequencing]
DANPOS is developed for comparison nucleosome maps generated based on high-throughput sequencing, it detects changes in enrichmentor .
Revision as of 12:30, 20 March 2012
A Hidden Markov Model for Analyzing ChIP-chip Experiments on Genome Tiling Arrays
A model-based algorithm for finding enriched regions in ChIP-Chip experiments
An integrated webserver for analyzing ChIP-chip data
A intuitive and efficient algorithm for the mapping of millions of query oligonucleotide fragments to the genome of any given length, at least an order of magnitude faster than other popular existing tools
A model-based algorithm for finding enriched regions in ChIP-Seq experiments.
BSMAP is the first general-purpose bisulfite mapping software. It is able to map high-throughput bisulfite reads at whole genome level with feasible memory and CPU usage.
DyChIPS is designed for comparative analysis of ChIPSeq data such as protein binding or histone modification.