From OpenWetWare

Revision as of 12:29, 4 June 2013 by Janet B. Matsen (Talk | contribs)
Jump to: navigation, search

Back to Protocols


Our System


  • If you desire 4oC during your spin cycle, you must allow the machine to cool to that point before it will allow you to press start.
  • If you use too small of a volume (< half full) in the ultracentrifuge tubes, they will collapse!
    • Tubes with only 1/2 mL liquid collapse in ultracentrifuge.
      Tubes with only 1/2 mL liquid collapse in ultracentrifuge.
    • It is hard to say how much is enough, but it seems to be about 1 mL. 1/2 mL definitely collapsed on Janet in 5/2013.
    • We should be able to find smaller-volume tubes for our rotor. (link)
    • You probably won't be able to get any sample out of a collapsed tube.
    • When they collapse it is very tricky to get them out. Needle nose pliers are probably your best bet but it can still be very hard.
  • If the ultracentrifuge won't start and won't even try to start, open the door, lift the rotor up, place it back down, let it cool back down to your desired temp, and hold start.

How balance does it need to be?

  • Tech support 5/2013 JM said that you can balance oppositely placed buckets by eye. There is no need to spend the time weighing down to the nearest milligram. The centrifuge will stop itself if it is off balance. The auto shut-off feature is conservative enough that you cannot hurt the rotor by having too imbalanced of samples. You can, however, waste your time if you need to rebalance and restart the ultracentrifuge.

Example Protocols

  • To spin down the membranes and membrane-bound proteins in a crude extract, centrifuge for 45,000 RPM at 4oC for 1 hour. With our MLS-50 mushroom-shaped rotor, this is 163,000xg at raverage (108,000xg at rminimum).

Important Info about Rotor & Tubes

  • Tubes should never be less than half filled or they will collapse. - Tech support 5/2013 via Janet
    • This is true for every tube material and size.
  • You can wash and re-use tubes, however, deformed tubes will collapse.
    • Be careful to wash them with compatible liquids. See the manuals.
  • There are seals inside the swinging buckets (tube holders) that seal the sample when you screw the bucket lid tight. These are very important. The ultracentrifuge uses a strong vacuum to keep the samples chilled. If the seal fails, your sample will be sucked out of the swinging basket and end up in the vacuum. Then the centrifuge will stop because it gets off balance. There is no way to recover after this.
    • location = top of bucket (thing that sits on the mushroom)
    • Tech support said we should inspect monthly, replace them annually, and have spares on hand. I am skeptical, as this doesn't factor in how heavily the system is used. If one gets pinched/cracked then replace them all at the same time.
    • Item ordering number: 824412 O.

Parts & Info

  • A fuller product spec sheet for the MLS-50:
    MLS-50 product sheet
    from website PDF

If you want to use different tubes

  • Amanda has been buying 5mL Ultraclear tubes. If you want to use < 2.5 mL, you need to buy smaller tubes.
    • You can't use conical unless you buy a support insert.
    • Polycarbonate is more clear than polyallomer.
    • You can't fill a thick walled tube < 1/2 full, even though they are thicker. (Janet asked!)
Personal tools