Lkelly9 Week 6: Difference between revisions

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==Workflow/Methods==
==Workflow/Methods==
*First, i picked one of the "Gaining a Better Understanding of the Fermentation/Respiration Switch" project and read the Albertin et al (2011) paper. Attached is a PDF of the notes that I took on this paper as I was reading it.  I used these notes to better understand how different variables were related and write a system of differential equations.
**[[media:AlbertinArticleNoteslkelly9.pdf|Notes on Albertin et al Article]]
*Based on the reading, I concluded that the relationship between nitrogen concentration, K (population limit), CO2 production (Vmax) was important in regards to the fermentation respiration switch.
==Results==
==Results==
#'''Pick one of the two general projects above.'''
===Hypothesis===
#*For this assignment, I chose the Albertin et al (2011) paper, which is part of the "gaining a better understanding of the fermentation/respiration switch" project.
===State Variables===
#'''Carefully read the first paper associated with your project.'''
===Differential Equations===
#*Attached is a PDF of the notes that I took on this paper as I was reading it.  I used these notes to better understand how different variables were related and write a system of differential equations.
===Explanation===
#*[[media:AlbertinArticleNoteslkelly9.pdf|Notes on Albertin et al Article]]
#'''Propose a hypothesis about the impact of the ammonium feed rate on a quantity of interest (alcohol, carbon dioxide, glutamate, etc). This quantity may or may not be one quantified in the figures of the Journal Club One paper.'''
#'''Delineate state variables that are necessary to the process.'''
#'''Write a system of differential equations that you think captures the important behaviors.'''
#'''Explain and justify the terms in your differential equation system.
'''
 
==Conclusion==
==Conclusion==
==Acknowledgements==
==Acknowledgements==

Revision as of 19:54, 22 February 2017

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Purpose

  • The purpose of this assignment is to hypothesize what the impact of ammonium feet rate is on a quantity of interest in a chosen journal article and devise a system of differential equations that captures the important behaviors using state variables that are necessary to the process.

Workflow/Methods

  • First, i picked one of the "Gaining a Better Understanding of the Fermentation/Respiration Switch" project and read the Albertin et al (2011) paper. Attached is a PDF of the notes that I took on this paper as I was reading it. I used these notes to better understand how different variables were related and write a system of differential equations.
  • Based on the reading, I concluded that the relationship between nitrogen concentration, K (population limit), CO2 production (Vmax) was important in regards to the fermentation respiration switch.

Results

Hypothesis

State Variables

Differential Equations

Explanation

Conclusion

Acknowledgements

References

  • Dahlquist, Kam D. (2017) BIOL398-05/S17:Week 6. Retrieved from http://www.openwetware.org/wiki/BIOL398-05/S17:Week_6 on 22 February 2017.
  • Albertin, W., Marullo, P., Aigle, M., Dillmann, C., de Vienne, D., Bely, M., & Sicard, D. (2011). Population Size Drives Industrial Saccharomyces cerevisiae Alcoholic Fermentation and Is under Genetic Control . Applied and Environmental Microbiology, 77(8), 2772–2784. http://doi.org/10.1128/AEM.02547-10
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