MATLAB Computational Biology Tools
From OpenWetWare
This is the OWW entry page for the MATLAB Computational Biology Tools discussion page (improve these pages with impunity)
Bioinformatics Toolbox
SimBio Toolbox
Systems Biology Toolbox
The Systems Biology Toolbox for MATLAB offers systems biologists an open and user extensible environment, in which to explore ideas, prototype and share new algorithms, and build applications for the analysis and simulation of biological systems. It features a wide range of functions:
* Modeling (based on ODEs and chemical reaction equations) * Handling of measurement data * Import of SBML models * Simulation (deterministic and stochastic) * Steady-state and stability analysis * Determination of the stoichiometric matrix * Parameter sensitivity analysis * Network identification * Parameter estimation * Determination of moiety conservations * Simple model reduction * Bifurcation analysis * Localization of mechanisms leading to complex behaviors * Optimization algorithms * and some specialized functions ...
doi:10.1093/bioinformatics/bti799
General MATLAB Topics
OpenWetWare Resources
Bioinformatics Discussion Group
OWW Computing Resources
Using OpenWetWare