MIT CSBi PhDs: Difference between revisions
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|Laura Kleiman||sontag@mit.edu|| 2004||[https://sorger.med.harvard.edu/ Peter Sorger], [http://web.mit.edu/dallab/ Doug Lauffenburger]||Rutgers University|| Biomathematics ||Experimental and computational analysis of EGFR pathway phosphorylation and dephosphorylation dynamics||[http://www.mit.edu/~sontag/ homepage]||April 9, 2010||Postdoc at Harvard Med|| | |Laura Kleiman||sontag@mit.edu|| 2004||[https://sorger.med.harvard.edu/ Peter Sorger], [http://web.mit.edu/dallab/ Doug Lauffenburger]||Rutgers University|| Biomathematics ||Experimental and computational analysis of EGFR pathway phosphorylation and dephosphorylation dynamics||[http://www.mit.edu/~sontag/ homepage]||April 9, 2010||Postdoc at Harvard Med|| | ||
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|Lawrence David||ldavid@mit.edu||2005||[http://almlab.mit.edu Eric Alm]||Columbia Univ.||Biomedical Eng.||Microbial genome evolutionary dynamics||[http://www.people.fas.harvard.edu/~ldavid/index.html Website]||June, 2010|| | |Lawrence David||ldavid@mit.edu||2005||[http://almlab.mit.edu Eric Alm]||Columbia Univ.||Biomedical Eng.||Microbial genome evolutionary dynamics||[http://www.people.fas.harvard.edu/~ldavid/index.html Website]||June, 2010||Asst. Prof. @ Duke|| | ||
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|Robin Friedman||robinf@mit.edu||2005||[http://genes.mit.edu/burgelab/ Chris Burge], [http://web.wi.mit.edu/bartel/pub/ David Bartel]||UCSD||Computer Science & Bioinformatics||The specificity and evolution of gene regulatory elements||||June, 2010||Postdoc at Institut Pasteur, Paris|| | |Robin Friedman||robinf@mit.edu||2005||[http://genes.mit.edu/burgelab/ Chris Burge], [http://web.wi.mit.edu/bartel/pub/ David Bartel]||UCSD||Computer Science & Bioinformatics||The specificity and evolution of gene regulatory elements||||June, 2010||Postdoc at Institut Pasteur, Paris|| | ||
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|Wesley Weng||ycweng@MIT.edu||2005||[http://www.media.mit.edu/nanoscale/ Scott Manalis]||Cornell University||Electrical & Computer Engr||Mass Resonator Sensing of Cellular Dynamics||||March, 2012||UT Southwestern Medical School (MD program)|| | |Wesley Weng||ycweng@MIT.edu||2005||[http://www.media.mit.edu/nanoscale/ Scott Manalis]||Cornell University||Electrical & Computer Engr||Mass Resonator Sensing of Cellular Dynamics||||March, 2012||UT Southwestern Medical School (MD program)|| | ||
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|Orr Ashenberg||orr@mit.edu||2006||[http://mit.edu/biology/keating/KeatingLab/Home.html Amy Keating],[http://laublab.mit.edu/ | |Orr Ashenberg||orr@mit.edu||2006||[http://mit.edu/biology/keating/KeatingLab/Home.html Amy Keating],[http://laublab.mit.edu/ Michael Laub]||Harvard College||Chemistry and Chemical Biology||Protein Interaction Specificity in Histidine Kinases||[http://labs.fhcrc.org/bloom/index.html postdoc]||September, 2012||Flu Fighter|| | ||
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|Emily Miraldi||emiraldi@mit.edu||2006||[http://web.mit.edu/fwhitelab/ Forest White]||Oberlin College||Biochemistry||Network level analysis of hepatic insulin signaling under high fat diet stress||||-||-|| | |Emily Miraldi||emiraldi@mit.edu||2006||[http://web.mit.edu/fwhitelab/ Forest White]||Oberlin College||Biochemistry||Network level analysis of hepatic insulin signaling under high fat diet stress||||-||-|| | ||
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|Christoph Engert||christoph@mit.edu||2008||[http://web.mit.edu/horvitz/www/ Robert Horvitz], [http://web.mit.edu/biophysics Alexander van Oudenaarden]||Heidelberg University (GER)||Mol. Biotech.||Physics of Worm Development (Working Title)||[http://mit.academia.edu/ChristophEngert more...]||-||-| | |Christoph Engert||christoph@mit.edu||2008||[http://web.mit.edu/horvitz/www/ Robert Horvitz], [http://web.mit.edu/biophysics Alexander van Oudenaarden]||Heidelberg University (GER)||Mol. Biotech.||Physics of Worm Development (Working Title)||[http://mit.academia.edu/ChristophEngert more...]||-||-| | ||
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|Ana Paula Leite||apleite@mit.edu||2008||[http://www.broadinstitute.org/about/core-members/aviv-regev Aviv Regev]||University of Minho, Portugal||Mathematics||Integrative approaches for systematic reconstruction of regulatory circuits in mammals||||Sept, 2012|| | |Ana Paula Leite||apleite@mit.edu||2008||[http://www.broadinstitute.org/about/core-members/aviv-regev Aviv Regev]||University of Minho, Portugal||Mathematics||Integrative approaches for systematic reconstruction of regulatory circuits in mammals||||Sept, 2012||Research Associate at University College London (UCL)|| | ||
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|Alex Robertson||alexrson@mit.edu||2008||[http://genes.mit.edu/burgelab/index.html Chris Burge]||Stanford University||Chemistry||The role of pre-mRNA processing in regulation of gene expression||||-||-| | |Alex Robertson||alexrson@mit.edu||2008||[http://genes.mit.edu/burgelab/index.html Chris Burge]||Stanford University||Chemistry||The role of pre-mRNA processing in regulation of gene expression||||-||-| | ||
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|Daniel Park||dkpark@mit.edu||2008||[http://people.csail.mit.edu/bab/index.html Bonnie Berger]||UC Irvine||Computer Science, Biology||Comparative analysis of protein-protein interaction networks ||||-||-| | |Daniel Park||dkpark@mit.edu||2008||[http://people.csail.mit.edu/bab/index.html Bonnie Berger]||UC Irvine||Computer Science, Biology||Comparative analysis of protein-protein interaction networks ||||-||-| | ||
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|Jonathan Rameseder||johnny@mit.edu||2008||[http://ki.mit.edu/people/faculty/yaffe Mike Yaffe]||Upper Austria University of Applied Sciences||Bioinformatics|| | |Jonathan Rameseder||johnny@mit.edu||2008||[http://ki.mit.edu/people/faculty/yaffe Mike Yaffe]||Upper Austria University of Applied Sciences||Bioinformatics||Multivariate methods for the statistical analysis of hyperdimensional high-content screening data||[http://openwetware.org/wiki/User:Jonathan_Rameseder CV and contact info]||July, 2014||Data Scientist at Apple Inc., Cupertino, California|| | ||
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|Chris Smillie||csmillie@mit.edu||2009||[http://almlab.mit.edu Eric Alm]||University of Arizona||Biology and Math||Evolution and ecology of the human microbiome||||-||-| | |Chris Smillie||csmillie@mit.edu||2009||[http://almlab.mit.edu Eric Alm]||University of Arizona||Biology and Math||Evolution and ecology of the human microbiome||||-||-| | ||
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|Xuebing Wu||wuxbl@mit.edu||2009||[http://web.mit.edu/sharplab/ Phil Sharp]||Tsinghua University (China)||Computer Science & Bioinformatics||High throughput mapping of RNA-RNA interactions||[http://www.mit.edu/~wuxbl/ homepage]||-||-| | |Xuebing Wu||wuxbl@mit.edu||2009||[http://web.mit.edu/sharplab/ Phil Sharp]||Tsinghua University (China)||Computer Science & Bioinformatics||High throughput mapping of RNA-RNA interactions||[http://www.mit.edu/~wuxbl/ homepage]||-||-| | ||
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|Anna Podgornaia||anna2009@mit.edu||2009||[http://laublab.mit.edu Michael Laub]||UC Berkeley||Biochemistry||Sequence space of the two-component signaling interface|||| | |Anna Podgornaia||anna2009@mit.edu||2009||[http://laublab.mit.edu Michael Laub]||UC Berkeley||Biochemistry||Sequence space of the two-component signaling interface||||September 2014||-| | ||
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|Zi Peng Fan||zifan@mit.edu||2009||[http://web.wi.mit.edu/young Richard Young]||Brandeis University||Biochemistry||Study of transcriptionally coherent clusters in the human embryonic stem cells||||-||-| | |Zi Peng Fan||zifan@mit.edu||2009||[http://web.wi.mit.edu/young Richard Young]||Brandeis University||Biochemistry||Study of transcriptionally coherent clusters in the human embryonic stem cells||||-||-| | ||
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|Nathan Cermak||cermak@mit.edu||2010||[http://manalis-lab.mit.edu Scott Manalis], [http://web.mit.edu/polz/ Martin Polz] ||University of Washington||Biochemistry, Applied Math, Sociology||Marine microbe biomass accumulation||[http://cermak.scripts.mit.edu home]||-||-| | |Nathan Cermak||cermak@mit.edu||2010||[http://manalis-lab.mit.edu Scott Manalis], [http://web.mit.edu/polz/ Martin Polz] ||University of Washington||Biochemistry, Applied Math, Sociology||Marine microbe biomass accumulation||[http://cermak.scripts.mit.edu home]||-||-| | ||
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|Thomas Gurry||tg296@mit.edu||2010||[http://www.rle.mit.edu/cbg/ Collin Stultz]||Imperial College London||Biochemistry||Formation of ordered multimers in intrinsically disordered proteins|||| | |Thomas Gurry||tg296@mit.edu||2010||[http://www.rle.mit.edu/cbg/ Collin Stultz]||Imperial College London||Biochemistry||Formation of ordered multimers in intrinsically disordered proteins||||December 2014||Postdoc at MIT|| | ||
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|Leyla Isik||lisik@mit.edu||2010||[http://cbcl.mit.edu Tomaso Poggio]||Johns Hopkins University||Biomedical Engineering||Timing of object recognition in the human visual system||||-||-| | |Leyla Isik||lisik@mit.edu||2010||[http://cbcl.mit.edu Tomaso Poggio]||Johns Hopkins University||Biomedical Engineering||Timing of object recognition in the human visual system||||-||-| | ||
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|Derrick Sund||dtsund@mit.edu||2011||TBD||University of Arizona||Mathematics, Biochemistry and Molecular Biophysics||TBD||||||-| | |Derrick Sund||dtsund@mit.edu||2011||TBD||University of Arizona||Mathematics, Biochemistry and Molecular Biophysics||TBD||||||-| | ||
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|Amanda | |Amanda Kedaigle||mandyjoy@mit.edu||2012||[http://fraenkel.mit.edu Ernest Fraenkel]||Wellesley College||Bioinformatics||Chromatin structure of Huntington's Disease||[http://amandakedaigle.weebly.com/ website]||||-| | ||
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|Peter Freese||pfreese@mit.edu||2012||[http://genes.mit.edu/burgelab/index.html Chris Burge]||Harvard College||Applied Mathematics - Biology||Post-transcriptional regulation of alternative splicing machinery||||||-| | |||
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|Mariana Matus||mgmatus@mit.edu||2012||[http://almlab.mit.edu/ Eric Alm]||UNAM (MEX) & Wageningen (NL)||Genomics & Biotechnology||TBD||||||-| | |||
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|Colette L Picard||cpicard@mit.edu||2012|| [http://gehringlab.wi.mit.edu/ Mary Gehring] ||Cornell University||Computational Biology & Statistics||TBD||||||-| | |||
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|Vincent Xue||vxue@mit.edu||2012||[http://mit.edu/biology/keating/KeatingLab/Home.html Amy Keating]||CUNY Hunter College||Computer Science & Biology||TBD||||||-| | |||
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|Nezar Abdennur||nezar@mit.edu||2012||[http://mit.edu/manoli/ Manolis Kellis]||University of Ottawa||Biochemistry, Mathematics & Bioinformatics||TBD||||||-| | |||
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| | |Maria Alexis||msalexis@mit.edu||2013||TBD||Stanford University||Biology||TBD||||||-| | ||
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| | |Natasha Patel-Murray||nlpm@mit.edu||2013||[http://fraenkel.mit.edu Ernest Fraenkel]||University of Michigan||Mathematical Biology||TBD||||||-| | ||
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| | |Jacob Witten||jswitten@mit.edu||2014||[http://biogels.mit.edu/ Katharina Ribbeck]||Amherst College||Biochemistry & Biophysics, Mathematics||TBD||||||-| | ||
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| | |Cassandra Schaening-Burgos||axolotl@mit.edu||2014||[http://genes.mit.edu/burgelab/ Chris Burge],[http://gilbertlab.mit.edu/ Wendy Gilbert]||University of Puerto Rico||Computer Science||TBD||||||-| | ||
|- | |- | ||
| | |Max Walt Shen||maxwshen@mit.edu||2015||||University of California, San Diego||Computer Science: Bioinformatics||TBD||||||-| |
Latest revision as of 14:58, 11 January 2016
Click on the arrow atop each column to resort the table.
Name | Class | Lab | UG Inst. | UG Major | Thesis | Personal page | Defended | Currently | ||
---|---|---|---|---|---|---|---|---|---|---|
Sabrina Spencer | spencers@mit.edu | 2004 | Peter Sorger | The George Washington Univ | Biology & French Literature | Cell-to-cell variability in apoptosis | website | May, 2009 | Postdoc at Stanford Univ | |
Grace Zheng | gzheng@mit.edu | 2004 | Phil Sharp | University of British Columbia | Computer Science | MicroRNA in Embryonic Stem Cells | June, 2010 | Postdoc at Stanford Univ | ||
Laura Kleiman | sontag@mit.edu | 2004 | Peter Sorger, Doug Lauffenburger | Rutgers University | Biomathematics | Experimental and computational analysis of EGFR pathway phosphorylation and dephosphorylation dynamics | homepage | April 9, 2010 | Postdoc at Harvard Med | |
Lawrence David | ldavid@mit.edu | 2005 | Eric Alm | Columbia Univ. | Biomedical Eng. | Microbial genome evolutionary dynamics | Website | June, 2010 | Asst. Prof. @ Duke | |
Robin Friedman | robinf@mit.edu | 2005 | Chris Burge, David Bartel | UCSD | Computer Science & Bioinformatics | The specificity and evolution of gene regulatory elements | June, 2010 | Postdoc at Institut Pasteur, Paris | ||
B. Jesse Shapiro | jesse1@mit.edu | 2005 | Eric Alm | McGill University | Biology | Looking for signatures of natural selection in the microbial world | [1] | Sept, 2010 | Postdoc at Harvard Public Health | |
Ramon Salsas Escat | ramon12@mit.edu | 2005 | Collin Stultz | Institut Quimic de Sarria (Barcelona, Spain) | Chemistry | Collagen conformational fluctuations and degradation | June, 2010 | Business development at Lipotec | ||
Chandni Valiathan | chandni@mit.edu | 2005 | Leona Samson | Brandeis University | Computer Science and Math | Gene expression signatures for cell death or survival after DNA damage | June, 2011 | |||
Shao Shan (Carol) Huang | shhuang@salk.edu | 2005 | Ernest Fraenkel | The University of British Columbia | June, 2011 | Postdoc at Salk Institute | ||||
Wesley Weng | ycweng@MIT.edu | 2005 | Scott Manalis | Cornell University | Electrical & Computer Engr | Mass Resonator Sensing of Cellular Dynamics | March, 2012 | UT Southwestern Medical School (MD program) | ||
Orr Ashenberg | orr@mit.edu | 2006 | Amy Keating,Michael Laub | Harvard College | Chemistry and Chemical Biology | Protein Interaction Specificity in Histidine Kinases | postdoc | September, 2012 | Flu Fighter | |
Emily Miraldi | emiraldi@mit.edu | 2006 | Forest White | Oberlin College | Biochemistry | Network level analysis of hepatic insulin signaling under high fat diet stress | - | - | ||
Yuchun Guo | yguo@mit.edu | 2006 | David Gifford | Tsinghua University (China) | Materials Science & Computer Science | Transcriptional regulation in development of motor neurons from embryonic stem cells | - | - | ||
Surasak Chunsrivirot | fa833@mit.edu | 2006 | Bernhardt Trout | MIT | Chemistry | Nucleation of Pharmaceutical Ingredient: a Computational Investigation | June, 2011 | Researcher at National Center for Genetic Engineering and Biotechnology (Thailand) | ||
Charles Lin | chazlin@mit.edu | 2007 | Chris Burge, Rick Young | Duke University | Biology and Physics | Making sense of divergent transcription | September, 2012 | Research Fellow at Dana Farber Cancer Institute | ||
Michelle Chan | mwchan@mit.edu | 2007 | Aviv Regev | University of British Columbia | Computer Science & Microbiology | Evolution of Transcriptional Modules in Yeast | - | |||
Jonathan Friedman | yonatanf@mit.edu | 2007 | Eric Alm, Daniel Rothman | Tel Aviv University | Physics & Biology | Composition of microbial communities | - | |||
Albert W. Cheng | awcheng@mit.edu | 2007 | Chris Burge,Rudolf Jaenisch | Hong Kong University of Science and Technology (HKUST) | Biochemistry | Gene regulation during cancer metastasis, early embryogenesis and somatic cell reprogramming | homepage | - | ||
Naiyan Chen | naiyan@mit.edu | 2007 | Mriganka Sur,Fatih Yanik | Imperial College London | Biomedical Engineering | Cholinergic modulation in the cortex | - | |||
Yuanyuan Cui | cuiyy@mit.edu | 2007 | Bruce Tidor | Tsinghua University (China) | Biology | Construction and utilization of a Kronecker model for E.coli central carbon metabolic network | - | |||
Katherine Romer | kromer@mit.edu | 2008 | David Page | MIT | Computer Science, Biology | Regulation of sperm production in the mouse | - | |||
Christopher Negron | cnegron@mit.edu | 2008 | Amy Keating | The City College of New York | Physics | Design of coiled-coil interaction networks | - | |||
Christoph Engert | christoph@mit.edu | 2008 | Robert Horvitz, Alexander van Oudenaarden | Heidelberg University (GER) | Mol. Biotech. | Physics of Worm Development (Working Title) | more... | - | ||
Ana Paula Leite | apleite@mit.edu | 2008 | Aviv Regev | University of Minho, Portugal | Mathematics | Integrative approaches for systematic reconstruction of regulatory circuits in mammals | Sept, 2012 | Research Associate at University College London (UCL) | ||
Alex Robertson | alexrson@mit.edu | 2008 | Chris Burge | Stanford University | Chemistry | The role of pre-mRNA processing in regulation of gene expression | - | |||
Daniel Park | dkpark@mit.edu | 2008 | Bonnie Berger | UC Irvine | Computer Science, Biology | Comparative analysis of protein-protein interaction networks | - | |||
Jonathan Rameseder | johnny@mit.edu | 2008 | Mike Yaffe | Upper Austria University of Applied Sciences | Bioinformatics | Multivariate methods for the statistical analysis of hyperdimensional high-content screening data | CV and contact info | July, 2014 | Data Scientist at Apple Inc., Cupertino, California | |
Chris Smillie | csmillie@mit.edu | 2009 | Eric Alm | University of Arizona | Biology and Math | Evolution and ecology of the human microbiome | - | |||
Vikram Agarwal | vagarwal@mit.edu | 2009 | David Bartel | University of Texas at Austin | Biology | Improving quantitative models of animal miRNA target prediction | - | |||
Xuebing Wu | wuxbl@mit.edu | 2009 | Phil Sharp | Tsinghua University (China) | Computer Science & Bioinformatics | High throughput mapping of RNA-RNA interactions | homepage | - | ||
Anna Podgornaia | anna2009@mit.edu | 2009 | Michael Laub | UC Berkeley | Biochemistry | Sequence space of the two-component signaling interface | September 2014 | |||
Zi Peng Fan | zifan@mit.edu | 2009 | Richard Young | Brandeis University | Biochemistry | Study of transcriptionally coherent clusters in the human embryonic stem cells | - | |||
Nathan Cermak | cermak@mit.edu | 2010 | Scott Manalis, Martin Polz | University of Washington | Biochemistry, Applied Math, Sociology | Marine microbe biomass accumulation | home | - | ||
Thomas Gurry | tg296@mit.edu | 2010 | Collin Stultz | Imperial College London | Biochemistry | Formation of ordered multimers in intrinsically disordered proteins | December 2014 | Postdoc at MIT | ||
Leyla Isik | lisik@mit.edu | 2010 | Tomaso Poggio | Johns Hopkins University | Biomedical Engineering | Timing of object recognition in the human visual system | - | |||
Manoshi Datta | mdatta@mit.edu | 2010 | Jeff Gore | UC Berkeley | Bioengineering, Chemical Biology | Understanding the effect of interspecies interactions of community structure and dynamics | - | |||
Shicong (Mimi) Xie | xies@mit.edu | 2010 | Adam Martin | UC Berkeley | Physics, Applied Mathematics | Coordination of cellular forces for morphogensis | - | |||
Arshed Al-Obeidi | arshed@mit.edu | 2010 | Peter Sorger, Doug Lauffenburger | University of Arizona | Biology | Mechanisms of cell death | - | |||
Sarah Spencer | sjspence@mit.edu | 2011 | Eric Alm | Washington University in St. Louis | Biology | TBD | ||||
Boyang Zhao | bozhao@mit.edu | 2011 | Mike Hemann, Doug Lauffenburger | University of Michigan, Ann Arbor | Biomedical Engineering | TBD | homepage | |||
Kelly Brock | kbrock@mit.edu | 2011 | Jeremy England | Harvard University | Engineering Sciences | TBD | ||||
Maxim Wolf | mywolf@mit.edu | 2011 | Manolis Kellis | University of Maryland | Biology, Chemistry, Physics | TBD | ||||
Thomas Willems | twillems@mit.edu | 2011 | Doug Lauffenburger | University of California-Berkeley | Chemical Engineering | TBD | ||||
Asa Adadey | aadadey@mit.edu | 2011 | Chris Burge | University of Maryland Baltimore County | Bioinformatics & Computational Biology | TBD | ||||
Derrick Sund | dtsund@mit.edu | 2011 | TBD | University of Arizona | Mathematics, Biochemistry and Molecular Biophysics | TBD | ||||
Amanda Kedaigle | mandyjoy@mit.edu | 2012 | Ernest Fraenkel | Wellesley College | Bioinformatics | Chromatin structure of Huntington's Disease | website | |||
Peter Freese | pfreese@mit.edu | 2012 | Chris Burge | Harvard College | Applied Mathematics - Biology | Post-transcriptional regulation of alternative splicing machinery | ||||
Mariana Matus | mgmatus@mit.edu | 2012 | Eric Alm | UNAM (MEX) & Wageningen (NL) | Genomics & Biotechnology | TBD | ||||
Colette L Picard | cpicard@mit.edu | 2012 | Mary Gehring | Cornell University | Computational Biology & Statistics | TBD | ||||
Vincent Xue | vxue@mit.edu | 2012 | Amy Keating | CUNY Hunter College | Computer Science & Biology | TBD | ||||
Nezar Abdennur | nezar@mit.edu | 2012 | Manolis Kellis | University of Ottawa | Biochemistry, Mathematics & Bioinformatics | TBD | ||||
Maria Alexis | msalexis@mit.edu | 2013 | TBD | Stanford University | Biology | TBD | ||||
Natasha Patel-Murray | nlpm@mit.edu | 2013 | Ernest Fraenkel | University of Michigan | Mathematical Biology | TBD | ||||
Jacob Witten | jswitten@mit.edu | 2014 | Katharina Ribbeck | Amherst College | Biochemistry & Biophysics, Mathematics | TBD | ||||
Cassandra Schaening-Burgos | axolotl@mit.edu | 2014 | Chris Burge,Wendy Gilbert | University of Puerto Rico | Computer Science | TBD | ||||
Max Walt Shen | maxwshen@mit.edu | 2015 | University of California, San Diego | Computer Science: Bioinformatics | TBD |