Maerkl:Back Door

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Contents


Instruments

Lab Server

Qarray2

Arrayworx

Nikon Ti-E

Thermocyclers

Microplate Incubator

Group Meeting

Fridays, 11am in AI 2142

Agenda

Jan. 16th topics: journal club, lab duties, new lab in general (to do list, items we need, ...)

Jan. 30th: cold storage, equipment update, DNA oligos,

Journal Club

  • Nature (weekly) (Marcel)
  • Science (weekly) (Nicolas)
  • Cell (bi-weekly) (Alina)
  • PNAS (weekly) (Arun)
  • PLOS (bio + compbio)(monthly) (Alina)
  • Nature Methods (monthly) (Sylvie)
  • Nature Biotech (monthly) (Meltem)
  • Mol Sys Bio (monthly) (Sylvie)
  • Nucleic Acid Res (bi-weekly)
  • JACS (weekly) (Luis)
  • Lab on a Chip (monthly) (Meltem, Luis)
  • Analytical Chemistry (Luis)
  • PRL (Lina)
  • Nature Photonics (Lina)

Lab Duties

Webpages (Sebastian)

  • update content (Sebastian)
  • handle useraccounts (Sebastian)

Cold Storage (Nicolas)

  • organize storage -> Nicolas
  • defrost when necessary -> Nicolas

Common supply / Lab consumables

  • PDMS -> Nicolas
  • Chemicals & solvents -> Arun
  • pipette tips, gloves, cell culture PW, 15ml/50ml falcons, filters, syringes, eppendorf tubes, PCR -> Sylvie, Marcel

Equipment care (rotate, revisit)

  • Qarray2 / QPix2 / QFill -> Nicolas
  • ArrayWorx -> Marcel
  • Autoclave --> Sylvie
  • Millipore System, PDMS Spinner --> Arun

Chemical Inventory (Arun)

  • cont. update (Arun)
  • handle MSDS (Arun)

Lab Server (Nicolas)

  • manage backups
  • keep it running
  • manage user accounts
  • etc.

Mail and packaging material (garbage) (Rotation schedule: Arun, Sylvie, Nicolas, Marcel)

IT

FTP server

Lab folder: stisrv.epfl.ch/ibi2/lbnc

E-buying

How to subscribe to our mailing list

Journals

Search Engines

Editing Wikis:

Calendar

All Calendars

To Do List

  • Equipment to order:
    • Microplate Reader (SM)
      • Spectramax M2e or similar
    • Second Jenkons Incubator (SM)
    • High-content plate incubator (Nicolas and Sylvie)
    • Speed-Vac (SM)
  • Misc items to order:
    • Coffee machine (bean based machine, quote + expected cost, place)

Reading List

Sylvie:

  1. Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, Ignatchenko A, Li J, Pu S, Datta N, Tikuisis AP, Punna T, Peregrín-Alvarez JM, Shales M, Zhang X, Davey M, Robinson MD, Paccanaro A, Bray JE, Sheung A, Beattie B, Richards DP, Canadien V, Lalev A, Mena F, Wong P, Starostine A, Canete MM, Vlasblom J, Wu S, Orsi C, Collins SR, Chandran S, Haw R, Rilstone JJ, Gandi K, Thompson NJ, Musso G, St Onge P, Ghanny S, Lam MH, Butland G, Altaf-Ul AM, Kanaya S, Shilatifard A, O'Shea E, Weissman JS, Ingles CJ, Hughes TR, Parkinson J, Gerstein M, Wodak SJ, Emili A, and Greenblatt JF. . pmid:16554755. PubMed HubMed [Krogan-2006]
  2. Ghaemmaghami S, Huh WK, Bower K, Howson RW, Belle A, Dephoure N, O'Shea EK, and Weissman JS. . pmid:14562106. PubMed HubMed [Ghae-2003]
  3. Ito T, Tashiro K, Muta S, Ozawa R, Chiba T, Nishizawa M, Yamamoto K, Kuhara S, and Sakaki Y. . pmid:10655498. PubMed HubMed [Ito-2001]
  4. Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, and Sakaki Y. . pmid:11283351. PubMed HubMed [ito-2000]
  5. Uetz P, Giot L, Cagney G, Mansfield TA, Judson RS, Knight JR, Lockshon D, Narayan V, Srinivasan M, Pochart P, Qureshi-Emili A, Li Y, Godwin B, Conover D, Kalbfleisch T, Vijayadamodar G, Yang M, Johnston M, Fields S, and Rothberg JM. . pmid:10688190. PubMed HubMed [Uetz-2000]
  6. Ho Y, Gruhler A, Heilbut A, Bader GD, Moore L, Adams SL, Millar A, Taylor P, Bennett K, Boutilier K, Yang L, Wolting C, Donaldson I, Schandorff S, Shewnarane J, Vo M, Taggart J, Goudreault M, Muskat B, Alfarano C, Dewar D, Lin Z, Michalickova K, Willems AR, Sassi H, Nielsen PA, Rasmussen KJ, Andersen JR, Johansen LE, Hansen LH, Jespersen H, Podtelejnikov A, Nielsen E, Crawford J, Poulsen V, Sørensen BD, Matthiesen J, Hendrickson RC, Gleeson F, Pawson T, Moran MF, Durocher D, Mann M, Hogue CW, Figeys D, and Tyers M. . pmid:11805837. PubMed HubMed [Ho-2002]
  7. Jones RB, Gordus A, Krall JA, and MacBeath G. . pmid:16273093. PubMed HubMed [Jones-2006]
  8. Ramachandran N, Hainsworth E, Bhullar B, Eisenstein S, Rosen B, Lau AY, Walter JC, and LaBaer J. . pmid:15232106. PubMed HubMed [Ramachandran-2004]
  9. Gavin AC, Bösche M, Krause R, Grandi P, Marzioch M, Bauer A, Schultz J, Rick JM, Michon AM, Cruciat CM, Remor M, Höfert C, Schelder M, Brajenovic M, Ruffner H, Merino A, Klein K, Hudak M, Dickson D, Rudi T, Gnau V, Bauch A, Bastuck S, Huhse B, Leutwein C, Heurtier MA, Copley RR, Edelmann A, Querfurth E, Rybin V, Drewes G, Raida M, Bouwmeester T, Bork P, Seraphin B, Kuster B, Neubauer G, and Superti-Furga G. . pmid:11805826. PubMed HubMed [Gavin-2002]
  10. Zhu H, Bilgin M, Bangham R, Hall D, Casamayor A, Bertone P, Lan N, Jansen R, Bidlingmaier S, Houfek T, Mitchell T, Miller P, Dean RA, Gerstein M, and Snyder M. . pmid:11474067. PubMed HubMed [Zhu-2001]
  11. Ptacek J, Devgan G, Michaud G, Zhu H, Zhu X, Fasolo J, Guo H, Jona G, Breitkreutz A, Sopko R, McCartney RR, Schmidt MC, Rachidi N, Lee SJ, Mah AS, Meng L, Stark MJ, Stern DF, De Virgilio C, Tyers M, Andrews B, Gerstein M, Schweitzer B, Predki PF, and Snyder M. . pmid:16319894. PubMed HubMed [Ptacek-2005]
  12. Sachs K, Perez O, Pe'er D, Lauffenburger DA, and Nolan GP. . pmid:15845847. PubMed HubMed [Sachs-2005]
  13. Tarassov K, Messier V, Landry CR, Radinovic S, Serna Molina MM, Shames I, Malitskaya Y, Vogel J, Bussey H, and Michnick SW. . pmid:18467557. PubMed HubMed [Tarassov-2008]
All Medline abstracts: PubMed HubMed

Nicolas:

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