Mag Lab

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
Current revision (11:57, 15 July 2012) (view source)
(Added cellsignal and Merck)
 
(21 intermediate revisions not shown.)
Line 2: Line 2:
[[Image:Exterior view.jpg|thumb|right|Exterior view of the Bioscience Building]]
[[Image:Exterior view.jpg|thumb|right|Exterior view of the Bioscience Building]]
-
Welcome to the lab wiki of the [http://pcwww.liv.ac.uk/~aging/ Integrative Genomics of Ageing Group]. We are a highly interdisciplinary and international team, located in the heart of Liverpool (United Kingdom) and using *in silico*, *in vitro* as well as *in vivo* approaches to study the biology and genetics of ageing. The group's PI is Joao Pedro de Magalhaes, hence the name Mag Lab.  
+
Welcome to the lab wiki of the [http://pcwww.liv.ac.uk/~aging/ Integrative Genomics of Ageing Group]. We are a highly interdisciplinary and international team, located in the heart of Liverpool (United Kingdom) and using in silico, in vitro as well as in vivo approaches to study the biology and genetics of ageing. The group's PI is Joao Pedro de Magalhaes, hence the name Mag Lab.  
== About our lab ==
== About our lab ==
Line 18: Line 18:
* [http://www.senescence.info/ Introduction to Biogerontology]
* [http://www.senescence.info/ Introduction to Biogerontology]
* [http://www.liv.ac.uk/ The University of Liverpool]  
* [http://www.liv.ac.uk/ The University of Liverpool]  
-
* [http://www.liv.ac.uk/bio/ School of Biological Sciences]
+
* [http://www.liv.ac.uk/life-sciences/ School of Life Sciences]
* [http://www.liv.ac.uk/study/undergraduate/ Undergraduate]
* [http://www.liv.ac.uk/study/undergraduate/ Undergraduate]
* [http://www.liv.ac.uk/gradschool/ Graduate School]
* [http://www.liv.ac.uk/gradschool/ Graduate School]
* [http://www.liv.ac.uk/study/postgraduate/finance/ Finance & Funding]
* [http://www.liv.ac.uk/study/postgraduate/finance/ Finance & Funding]
* [http://www.liv.ac.uk/study/postgraduate/gradschool/ Postgraduate School]
* [http://www.liv.ac.uk/study/postgraduate/gradschool/ Postgraduate School]
-
* [http://www.liv.ac.uk/bio/postgrad/phd/handbook/index.html Postgraduate Handbook]  
+
* [http://www.liv.ac.uk/gradschool/pgrhandbook/ Postgraduate Handbook]  
== Infos for Students ==
== Infos for Students ==
-
If you are a member of the [http://www.liv.ac.uk/ University of Liverpool] you can get off-campus access to subscription-required journals (such as Science, Nature, Cell, etc. via [http://www.liv.ac.uk/library/electron/offcampus.html/ ezproxy].
+
[[Image:ezproxy.jpg|thumb|right|EZproxy]]
 +
If you are a member of the [http://www.liv.ac.uk/ University of Liverpool] you can get off-campus access to subscription-required journals (such as [http://www.sciencemag.org/ Science], [http://www.nature.com/ Nature], [http://www.cell.com/ Cell], etc. via [http://www.liv.ac.uk/library/electron/offcampus.html/ ezproxy].
For this purpose insert ".exproxy.liv.ac.uk." right after the [http://en.wikipedia.org/wiki/Top-level_domain/ top-level domain] (for example: .com, .gov, .de, etc.) and login with you username and password (enable cookies in the browser to avoid repeating this).
For this purpose insert ".exproxy.liv.ac.uk." right after the [http://en.wikipedia.org/wiki/Top-level_domain/ top-level domain] (for example: .com, .gov, .de, etc.) and login with you username and password (enable cookies in the browser to avoid repeating this).
-
== Bioinformatics Tools ==  
+
== Bioinformatics/Informatics Tools/Resources ==  
[[Image:Programming.jpg|thumb|right|Programming Language]]
[[Image:Programming.jpg|thumb|right|Programming Language]]
* [http://genomics.senescence.info/ HAGR (Human Ageing Genomic Resources)]
* [http://genomics.senescence.info/ HAGR (Human Ageing Genomic Resources)]
Line 37: Line 38:
* [http://genomics.senescence.info/species/index.html AnAge]
* [http://genomics.senescence.info/species/index.html AnAge]
* [http://ageing-map.org/ Digital Ageing Atlas]
* [http://ageing-map.org/ Digital Ageing Atlas]
-
* [http://nebc.nox.ac.uk/tools/bio-linux/bio-linux-5.0 Bio-Linux]
+
* [http://nebc.nerc.ac.uk/tools/bio-linux/bio-linux-6.0 Bio-Linux]
* [http://www.mozilla.com/en-US/ Firefox]
* [http://www.mozilla.com/en-US/ Firefox]
* [http://www.zotero.org/ Zotero]
* [http://www.zotero.org/ Zotero]
-
==People==
+
== List of Suppliers ==
 +
[[Image:Suppliers.jpg|thumb|right|Suppliers]]
 +
This is a list of useful suppliers for both the lab and office, including basic equipments from hypercentrifuges to books:
 +
* [https://software.liv.ac.uk/Downloads.aspx/ UoL software downloads]
 +
* [http://www.scientificlabs.eu/ Scientific Laboratory Supplies Ltd.]
 +
* [http://www.neb.uk.com/ New England Biolabs (UK) Ltd]
 +
* [http://uk.vwr.com/app/Home VWR International]
 +
* [http://www.greinerbioone.com/en/start/ Greiner Bio One]
 +
* [http://www1.qiagen.com/ QIAGEN - Sample & Assay Technologies]
 +
* [http://www.invitrogen.com/site/us/en/home.html/ Invitrogen.com a Provider of Essential Life Science Technologies]
 +
* [http://www.sigmaaldrich.com/sigma-aldrich/home.html/ Sigma Aldrich Home]
 +
* [http://www.bdbeurope.com/cgi-bin/bd/bdweb/eservices/content/show.bd?RootChannel=/Knowledge%20editorials/BDB%20Documents/BDB_CHOME&BV_UseBVCookie=yes&BD_SID=UWtSQzpNQT09Ojo%3D  Welcome to BD Biosciences Europe]
 +
* [http://www.fisher.co.uk/ Fisher Scientific UK - Laboratory supplies and chemical manufacturing]
 +
* [http://www.sigmaaldrich.com/life-science/custom-oligos.html/ Sigma-Genosys: Custom Oligos]
 +
* [http://www.shef.ac.uk/medicine/research/corefacilities/genetics.html Research Core Facilities]
 +
* [http://www.springerprotocols.com.ezproxy.liv.ac.uk/ Springer Protocols]
 +
* [http://www.springerlink.com/books/ SpringerLink - Books]
 +
* [http://www.mrw.interscience.wiley.com.ezproxy.liv.ac.uk/emrw/9780471142720/cp/cpmb/toc Table of Contents: Current Protocols in Molecular Biology: Wiley InterScience]
 +
* [https://www.roche-applied-science.com/PROD_INF/index.jsp?&id=labfaqs Roche Lab FAQs]
 +
* [http://www.cellsignal.com/about/marketing/marketing.html Cell Signalling Marketing Material]
 +
* [http://www.merckmillipore.de/life-science-research/literature/c_gfib.s1O0vMAAAEjhaVumAom#Posters Merck Posters, Brochures and Catalogs]
 +
 
 +
== People ==
*[[User:Daniel A. Wuttke | Daniel A. Wuttke]]
*[[User:Daniel A. Wuttke | Daniel A. Wuttke]]
*[[User:Joao Magalhaes | Joao Magalhaes]]
*[[User:Joao Magalhaes | Joao Magalhaes]]
Line 49: Line 72:
* [http://www.liv.ac.uk/integrative-biology/staff/brian-merry/ Dr. Brian Merry, University of Liverpool, Functional and Comparative Genomics]
* [http://www.liv.ac.uk/integrative-biology/staff/brian-merry/ Dr. Brian Merry, University of Liverpool, Functional and Comparative Genomics]
* [http://www.liv.ac.uk/physiology/research/morgan/index.htm/ Prof. Dr. Alan Morgan, University of Liverpool, School of Biomedical Sciences]
* [http://www.liv.ac.uk/physiology/research/morgan/index.htm/ Prof. Dr. Alan Morgan, University of Liverpool, School of Biomedical Sciences]
-
* [http://ualr.edu/research/index.php/tang/ Fusheng Tang, University of Arkansas, Little Rock]
+
* [http://ualr.edu/research/index.php/tang/ Assistance Prof. Dr. Fusheng Tang, University of Arkansas, Little Rock]
* [http://www.uams.edu/metabolic/about_us/reis.asp/ Prof. Dr. Robert J. Shmookler Reis, University of Arkansas for Medical Sciences]
* [http://www.uams.edu/metabolic/about_us/reis.asp/ Prof. Dr. Robert J. Shmookler Reis, University of Arkansas for Medical Sciences]
-
==News & Literature==
+
== News & Literature ==
<biblio>
<biblio>
 +
#Paper8 [http://pubs.aina.ucalgary.ca/arctic/Arctic64-4-497.pdf The Arctic Phoenix]
 +
// A wonderful long-lived sea bird, which lives at the harsh conditions of the arctic, shows little signs of senescence on sudden death, despite immense metabolic rate. http://umanitoba.ca/news/blogs/blog/2012/07/03/diving-seabird-shows-good-way-to-live-then-suddenly-die/
 +
[http://vimeo.com/28066351 Video]
#Paper7 pmid=17116322
#Paper7 pmid=17116322
// Creation of a human longevity-associated Network from homologous of different species. The nodes are very interesting.
// Creation of a human longevity-associated Network from homologous of different species. The nodes are very interesting.
Line 78: Line 104:
<!-- Replace the PubMed ID's ("pmid=#######") below with the PubMed ID's for your publications.  You can add or remove lines as needed 19418994 -->
<!-- Replace the PubMed ID's ("pmid=#######") below with the PubMed ID's for your publications.  You can add or remove lines as needed 19418994 -->
<biblio>
<biblio>
-
#Paper45 pmid=22752047
+
#Paper1 pmid=22752047
-
#Paper44 pmid=22722495
+
#Paper2 pmid=22722495
-
#Paper43 pmid=22555619
+
#Paper3 pmid=22555619
-
#Paper42 pmid=22327899
+
#Paper4 pmid=22327899
-
#Paper41 pmid=22205409
+
#Paper5 pmid=22205409
-
#Paper40 pmid=22188222
+
#Paper6 pmid=22188222
-
#Paper39 pmid=22090473
+
#Paper7 pmid=22090473
-
#Paper38 pmid=22073188
+
#Paper8 pmid=22073188
-
#Paper37 pmid=21994229
+
#Paper9 pmid=21994229
-
#Paper36 pmid=21600302
+
#Paper10 pmid=21600302
-
#Paper35 pmid=21512206
+
#Paper11 pmid=21512206
-
#Paper34 pmid=21226956
+
#Paper12 pmid=21226956
-
#Paper33 pmid=21204651
+
#Paper13 pmid=21204651
-
#Paper32 pmid=21182853
+
#Paper14 pmid=21182853
-
#Paper31 pmid=21108730
+
#Paper15 pmid=21108730
-
#Paper30 pmid=20538013
+
#Paper16 pmid=20538013
-
#Paper29 pmid=20415721
+
#Paper17 pmid=20415721
-
#Paper28 pmid=20388091
+
#Paper18 pmid=20388091
-
#Paper27 pmid=19900591
+
#Paper19 pmid=19900591
-
#Paper26 pmid=19522730
+
#Paper20 pmid=19522730
-
#Paper25 pmid=19418994
+
#Paper21 pmid=19418994
-
#Paper24 pmid=19388489
+
#Paper22 pmid=19388489
#Paper23 pmid=19189975
#Paper23 pmid=19189975
-
#Paper22 pmid=18986374
+
#Paper24 pmid=18986374
-
#Paper21 pmid=18478536
+
#Paper25 pmid=18478536
-
#Paper20 pmid=17595413
+
#Paper26 pmid=17595413
-
#Paper19 pmid=17459455
+
#Paper27 pmid=17459455
-
#Paper18 pmid=17339640
+
#Paper28 pmid=17339640
-
#Paper17 pmid=16226003
+
#Paper29 pmid=16226003
-
#Paper16 pmid=16132471
+
#Paper30 pmid=16132471
-
#Paper15 pmid=16024513
+
#Paper31 pmid=16024513
-
#Paper14 pmid=15946728
+
#Paper32 pmid=15946728
-
#Paper13 pmid=15619467
+
#Paper33 pmid=15619467
-
#Paper12 pmid=15608256
+
#Paper34 pmid=15608256
-
#Paper11 pmid=15489061
+
#Paper35 pmid=15489061
-
#Paper10 pmid=15466429
+
#Paper36 pmid=15466429
-
#Paper9 pmid=15383309
+
#Paper37 pmid=15383309
-
#Paper8 pmid=15312299
+
#Paper38 pmid=15312299
-
#Paper7 pmid=15280050
+
#Paper39 pmid=15280050
-
#Paper6 pmid=15247048
+
#Paper40 pmid=15247048
-
#Paper5 pmid=15177050
+
#Paper41 pmid=15177050
-
#Paper4 pmid=12766537
+
#Paper42 pmid=12766537
-
#Paper3 pmid=12175477
+
#Paper43 pmid=12175477
-
#Paper2 pmid=12123824
+
#Paper44 pmid=12123824
-
#Paper1 pmid=11583109
+
#Paper45 pmid=11583109
#Book1 isbn=9780415419543  
#Book1 isbn=9780415419543  
#Book2 isbn=9780203866740
#Book2 isbn=9780203866740
-
 
</biblio>
</biblio>

Current revision

University of Liverpool Logo
University of Liverpool Logo
Exterior view of the Bioscience Building
Exterior view of the Bioscience Building

Welcome to the lab wiki of the Integrative Genomics of Ageing Group. We are a highly interdisciplinary and international team, located in the heart of Liverpool (United Kingdom) and using in silico, in vitro as well as in vivo approaches to study the biology and genetics of ageing. The group's PI is Joao Pedro de Magalhaes, hence the name Mag Lab.

Contents

About our lab

Scientists
Scientists

Useful Links For Prospective Students

Night time lapse of the Bioscience Building
Night time lapse of the Bioscience Building

Infos for Students

EZproxy
EZproxy

If you are a member of the University of Liverpool you can get off-campus access to subscription-required journals (such as Science, Nature, Cell, etc. via ezproxy.

For this purpose insert ".exproxy.liv.ac.uk." right after the top-level domain (for example: .com, .gov, .de, etc.) and login with you username and password (enable cookies in the browser to avoid repeating this).

Bioinformatics/Informatics Tools/Resources

Programming Language
Programming Language

List of Suppliers

Suppliers
Suppliers

This is a list of useful suppliers for both the lab and office, including basic equipments from hypercentrifuges to books:

People

Collaborations

News & Literature

  1. The Arctic Phoenix [Paper8]
    A wonderful long-lived sea bird, which lives at the harsh conditions of the arctic, shows little signs of senescence on sudden death, despite immense metabolic rate. http://umanitoba.ca/news/blogs/blog/2012/07/03/diving-seabird-shows-good-way-to-live-then-suddenly-die/

    Video

  2. Budovsky A, Abramovich A, Cohen R, Chalifa-Caspi V, and Fraifeld V. . pmid:17116322. PubMed HubMed [Paper7]
    Creation of a human longevity-associated Network from homologous of different species. The nodes are very interesting.

  3. Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, Tonti-Filippini J, Nery JR, Lee L, Ye Z, Ngo QM, Edsall L, Antosiewicz-Bourget J, Stewart R, Ruotti V, Millar AH, Thomson JA, Ren B, and Ecker JR. . pmid:19829295. PubMed HubMed [Paper6]
    First step to understand the methylation pattern of cells and how it alters in time.

    This is interesting especially for two aspects: The embryonal development and the ageing process

  4. Eisenberg T, Knauer H, Schauer A, Büttner S, Ruckenstuhl C, Carmona-Gutierrez D, Ring J, Schroeder S, Magnes C, Antonacci L, Fussi H, Deszcz L, Hartl R, Schraml E, Criollo A, Megalou E, Weiskopf D, Laun P, Heeren G, Breitenbach M, Grubeck-Loebenstein B, Herker E, Fahrenkrog B, Fröhlich KU, Sinner F, Tavernarakis N, Minois N, Kroemer G, and Madeo F. . pmid:19801973. PubMed HubMed [Paper5]
    Spermidine is a small molecule, just a polyamine with a very simple structure: C7H19N3

  5. Zid BM, Rogers AN, Katewa SD, Vargas MA, Kolipinski MC, Lu TA, Benzer S, and Kapahi P. . pmid:19804760. PubMed HubMed [Paper4]
    Translating Dietary Restriction into Long Life PaperFlick Supporting Documents

  6. Veatch JR, McMurray MA, Nelson ZW, and Gottschling DE. . pmid:19563757. PubMed HubMed [Paper3]
    Mitochondrial Links to Genomic Instability in Aging PaperFlick

  7. Brunet A. . pmid:19360073. PubMed HubMed [Paper2]
    Nice essay about connections of cancer, ageing and CR

  8. Kalaany NY and Sabatini DM. . pmid:19279572. PubMed HubMed [Paper1]
    I think xenografts are a very bad model of cancer formation [DW].

All Medline abstracts: PubMed HubMed

Publications

  1. Yu C, Li Y, Holmes A, Szafranski K, Faulkes CG, Coen CW, Buffenstein R, Platzer M, de Magalhães JP, and Church GM. . pmid:22073188. PubMed HubMed [Paper8]
  2. de Magalhães JP, Wuttke D, Wood SH, Plank M, and Vora C. . pmid:22090473. PubMed HubMed [Paper7]
  3. de Magalhães JP and Matsuda A. . pmid:22188222. PubMed HubMed [Paper6]
  4. Li Y and de Magalhães JP. . pmid:22205409. PubMed HubMed [Paper5]
  5. Plank M, Wuttke D, van Dam S, Clarke SA, and de Magalhães JP. . pmid:22327899. PubMed HubMed [Paper4]
  6. Wood SH, Craig T, Li Y, Merry B, and de Magalhães JP. . pmid:22555619. PubMed HubMed [Paper3]
  7. Wuttke D and de Magalhães JP. . pmid:22722495. PubMed HubMed [Paper2]
  8. Aledo JC, Valverde H, and de Magalhães JP. . pmid:22752047. PubMed HubMed [Paper1]
  9. Silva AS, Wood SH, van Dam S, Berres S, McArdle A, and de Magalhães JP. . pmid:21994229. PubMed HubMed [Paper9]
  10. Freitas AA and de Magalhães JP. . pmid:21600302. PubMed HubMed [Paper10]
  11. de Magalhães JP. . pmid:21512206. PubMed HubMed [Paper11]
  12. Freitas AA, Vasieva O, and de Magalhães JP. . pmid:21226956. PubMed HubMed [Paper12]
  13. Fuellen G, Adjaye J, de Grey A, Lepperdinger G, de Magalhães JP, Sühnel J, and Wipat A. . pmid:21204651. PubMed HubMed [Paper13]
  14. de Magalhães JP. . pmid:21182853. PubMed HubMed [Paper14]
  15. Aledo JC, Li Y, de Magalhães JP, Ruíz-Camacho M, and Pérez-Claros JA. . pmid:21108730. PubMed HubMed [Paper15]
  16. Nicholas A, de Magalhaes JP, Kraytsberg Y, Richfield EK, Levanon EY, and Khrapko K. . pmid:20538013. PubMed HubMed [Paper16]
  17. Finch CE, Morgan TE, Longo VD, and de Magalhaes JP. . pmid:20415721. PubMed HubMed [Paper17]
  18. Cevenini E, Bellavista E, Tieri P, Castellani G, Lescai F, Francesconi M, Mishto M, Santoro A, Valensin S, Salvioli S, Capri M, Zaikin A, Monti D, de Magalhães JP, and Franceschi C. . pmid:20388091. PubMed HubMed [Paper18]
  19. de Magalhães JP, Finch CE, and Janssens G. . pmid:19900591. PubMed HubMed [Paper19]
  20. de Magalhães JP and Costa J. . pmid:19522730. PubMed HubMed [Paper20]
  21. de Magalhães JP. . pmid:19418994. PubMed HubMed [Paper21]
  22. Maldonado J, Pereira T, and Estudo AMPA. . pmid:19388489. PubMed HubMed [Paper22]
  23. de Magalhães JP, Curado J, and Church GM. . pmid:19189975. PubMed HubMed [Paper23]
  24. de Magalhães JP, Budovsky A, Lehmann G, Costa J, Li Y, Fraifeld V, and Church GM. . pmid:18986374. PubMed HubMed [Paper24]
  25. de Magalhães JP and Faragher RG. . pmid:18478536. PubMed HubMed [Paper25]
  26. de Magalhães JP, Sedivy JM, Finch CE, Austad SN, and Church GM. . pmid:17595413. PubMed HubMed [Paper26]
  27. de Magalhães JP and Church GM. . pmid:17459455. PubMed HubMed [Paper27]
  28. de Magalhães JP, Costa J, and Church GM. . pmid:17339640. PubMed HubMed [Paper28]
  29. de Magalhães JP and Church GM. . pmid:16226003. PubMed HubMed [Paper29]
  30. de Magalhães JP. . pmid:16132471. PubMed HubMed [Paper30]
  31. de Magalhães JP and Church GM. . pmid:16024513. PubMed HubMed [Paper31]
  32. de Magalhães JP and Sandberg A. . pmid:15946728. PubMed HubMed [Paper32]
  33. de Magalhães JP. . pmid:15619467. PubMed HubMed [Paper33]
  34. de Magalhães JP, Costa J, and Toussaint O. . pmid:15608256. PubMed HubMed [Paper34]
  35. de Magalhães JP, Chainiaux F, de Longueville F, Mainfroid V, Migeot V, Marcq L, Remacle J, Salmon M, and Toussaint O. . pmid:15489061. PubMed HubMed [Paper35]
  36. de Magalhães JP, Cabral JA, and Magalhães D. . pmid:15466429. PubMed HubMed [Paper36]
  37. de Magalhães JP. . pmid:15383309. PubMed HubMed [Paper37]
  38. de Magalhães JP and Toussaint O. . pmid:15312299. PubMed HubMed [Paper38]
  39. de Magalhães JP and Toussaint O. . pmid:15280050. PubMed HubMed [Paper39]
  40. de Magalhães JP, Migeot V, Mainfroid V, de Longueville F, Remacle J, and Toussaint O. . pmid:15247048. PubMed HubMed [Paper40]
  41. de Magalhães JP and Toussaint O. . pmid:15177050. PubMed HubMed [Paper41]
  42. de Magalhães JP. . pmid:12766537. PubMed HubMed [Paper42]
  43. de Magalhães JP and Toussaint O. . pmid:12175477. PubMed HubMed [Paper43]
  44. de Magalhães JP, Chainiaux F, Remacle J, and Toussaint O. . pmid:12123824. PubMed HubMed [Paper44]
  45. Dumont P, Royer V, Pascal T, Dierick JF, Chainiaux F, Frippiat C, de Magalhaes JP, Eliaers F, Remacle J, and Toussaint O. . pmid:11583109. PubMed HubMed [Paper45]
  46. edited by Christine Foyer, Richard Faragher, Paul Thornalley. Redox metabolism and longevity relationships in animals and plants. New York, NY: Taylor & Francis Group, 2009. isbn:9780415419543. [Book1]
  47. isbn:9780203866740. [Book2]
All Medline abstracts: PubMed HubMed
Personal tools