Mag Lab

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
Current revision (11:57, 15 July 2012) (view source)
(Added cellsignal and Merck)
 
(14 intermediate revisions not shown.)
Line 26: Line 26:
== Infos for Students ==
== Infos for Students ==
 +
[[Image:ezproxy.jpg|thumb|right|EZproxy]]
If you are a member of the [http://www.liv.ac.uk/ University of Liverpool] you can get off-campus access to subscription-required journals (such as [http://www.sciencemag.org/ Science], [http://www.nature.com/ Nature], [http://www.cell.com/ Cell], etc. via [http://www.liv.ac.uk/library/electron/offcampus.html/ ezproxy].
If you are a member of the [http://www.liv.ac.uk/ University of Liverpool] you can get off-campus access to subscription-required journals (such as [http://www.sciencemag.org/ Science], [http://www.nature.com/ Nature], [http://www.cell.com/ Cell], etc. via [http://www.liv.ac.uk/library/electron/offcampus.html/ ezproxy].
For this purpose insert ".exproxy.liv.ac.uk." right after the [http://en.wikipedia.org/wiki/Top-level_domain/ top-level domain] (for example: .com, .gov, .de, etc.) and login with you username and password (enable cookies in the browser to avoid repeating this).
For this purpose insert ".exproxy.liv.ac.uk." right after the [http://en.wikipedia.org/wiki/Top-level_domain/ top-level domain] (for example: .com, .gov, .de, etc.) and login with you username and password (enable cookies in the browser to avoid repeating this).
 +
 +
== Bioinformatics/Informatics Tools/Resources ==
 +
[[Image:Programming.jpg|thumb|right|Programming Language]]
 +
* [http://genomics.senescence.info/ HAGR (Human Ageing Genomic Resources)]
 +
* [http://genomics.senescence.info/ GeneAge]
 +
* [http://gendr.org/ GenDR]
 +
* [http://genomics.senescence.info/species/index.html AnAge]
 +
* [http://ageing-map.org/ Digital Ageing Atlas]
 +
* [http://nebc.nerc.ac.uk/tools/bio-linux/bio-linux-6.0 Bio-Linux]
 +
* [http://www.mozilla.com/en-US/ Firefox]
 +
* [http://www.zotero.org/ Zotero]
== List of Suppliers ==
== List of Suppliers ==
-
[[Suppliers.jpg|thumb|right|Suppliers]]
+
[[Image:Suppliers.jpg|thumb|right|Suppliers]]
 +
This is a list of useful suppliers for both the lab and office, including basic equipments from hypercentrifuges to books:
* [https://software.liv.ac.uk/Downloads.aspx/ UoL software downloads]
* [https://software.liv.ac.uk/Downloads.aspx/ UoL software downloads]
* [http://www.scientificlabs.eu/ Scientific Laboratory Supplies Ltd.]
* [http://www.scientificlabs.eu/ Scientific Laboratory Supplies Ltd.]
* [http://www.neb.uk.com/ New England Biolabs (UK) Ltd]
* [http://www.neb.uk.com/ New England Biolabs (UK) Ltd]
-
* [http://uk.vwr.com/app/Home/ VWR International Greiner Bio One]
+
* [http://uk.vwr.com/app/Home VWR International]
 +
* [http://www.greinerbioone.com/en/start/ Greiner Bio One]
* [http://www1.qiagen.com/ QIAGEN - Sample & Assay Technologies]
* [http://www1.qiagen.com/ QIAGEN - Sample & Assay Technologies]
* [http://www.invitrogen.com/site/us/en/home.html/ Invitrogen.com a Provider of Essential Life Science Technologies]
* [http://www.invitrogen.com/site/us/en/home.html/ Invitrogen.com a Provider of Essential Life Science Technologies]
* [http://www.sigmaaldrich.com/sigma-aldrich/home.html/ Sigma Aldrich Home]
* [http://www.sigmaaldrich.com/sigma-aldrich/home.html/ Sigma Aldrich Home]
* [http://www.bdbeurope.com/cgi-bin/bd/bdweb/eservices/content/show.bd?RootChannel=/Knowledge%20editorials/BDB%20Documents/BDB_CHOME&BV_UseBVCookie=yes&BD_SID=UWtSQzpNQT09Ojo%3D  Welcome to BD Biosciences Europe]
* [http://www.bdbeurope.com/cgi-bin/bd/bdweb/eservices/content/show.bd?RootChannel=/Knowledge%20editorials/BDB%20Documents/BDB_CHOME&BV_UseBVCookie=yes&BD_SID=UWtSQzpNQT09Ojo%3D  Welcome to BD Biosciences Europe]
-
* [http://www.fisher.co.uk/ Fisher Scientific UK - Laboratory supplies and chemical manufacturing/ Sigma-Genosys: Custom Oligos]
+
* [http://www.fisher.co.uk/ Fisher Scientific UK - Laboratory supplies and chemical manufacturing]
-
* [http://www.sigmaaldrich.com/life-science/custom-oligos.html]
+
* [http://www.sigmaaldrich.com/life-science/custom-oligos.html/ Sigma-Genosys: Custom Oligos]
* [http://www.shef.ac.uk/medicine/research/corefacilities/genetics.html Research Core Facilities]
* [http://www.shef.ac.uk/medicine/research/corefacilities/genetics.html Research Core Facilities]
* [http://www.springerprotocols.com.ezproxy.liv.ac.uk/ Springer Protocols]
* [http://www.springerprotocols.com.ezproxy.liv.ac.uk/ Springer Protocols]
-
* [http://www.springerlink.com/books/ SpringerLink - Books
+
* [http://www.springerlink.com/books/ SpringerLink - Books]
-
* [http://www.mrw.interscience.wiley.com.ezproxy.liv.ac.uk/emrw/9780471142720/cp/cpmb/toc/ Table of Contents: Current Protocols in Molecular Biology : Wiley InterScience]
+
* [http://www.mrw.interscience.wiley.com.ezproxy.liv.ac.uk/emrw/9780471142720/cp/cpmb/toc Table of Contents: Current Protocols in Molecular Biology: Wiley InterScience]
-
 
+
* [https://www.roche-applied-science.com/PROD_INF/index.jsp?&id=labfaqs Roche Lab FAQs]
-
 
+
* [http://www.cellsignal.com/about/marketing/marketing.html Cell Signalling Marketing Material]
-
 
+
* [http://www.merckmillipore.de/life-science-research/literature/c_gfib.s1O0vMAAAEjhaVumAom#Posters Merck Posters, Brochures and Catalogs]
-
== Bioinformatics/Informatics Tools/Resources ==
+
-
[[Image:Programming.jpg|thumb|right|Programming Language]]
+
-
* [http://genomics.senescence.info/ HAGR (Human Ageing Genomic Resources)]
+
-
* [http://genomics.senescence.info/ GeneAge]
+
-
* [http://gendr.org/ GenDR]
+
-
* [http://genomics.senescence.info/species/index.html AnAge]
+
-
* [http://ageing-map.org/ Digital Ageing Atlas]
+
-
* [http://nebc.nerc.ac.uk/tools/bio-linux/bio-linux-6.0 Bio-Linux]
+
-
* [http://www.mozilla.com/en-US/ Firefox]
+
-
* [http://www.zotero.org/ Zotero]
+
== People ==
== People ==
Line 68: Line 72:
* [http://www.liv.ac.uk/integrative-biology/staff/brian-merry/ Dr. Brian Merry, University of Liverpool, Functional and Comparative Genomics]
* [http://www.liv.ac.uk/integrative-biology/staff/brian-merry/ Dr. Brian Merry, University of Liverpool, Functional and Comparative Genomics]
* [http://www.liv.ac.uk/physiology/research/morgan/index.htm/ Prof. Dr. Alan Morgan, University of Liverpool, School of Biomedical Sciences]
* [http://www.liv.ac.uk/physiology/research/morgan/index.htm/ Prof. Dr. Alan Morgan, University of Liverpool, School of Biomedical Sciences]
-
* [http://ualr.edu/research/index.php/tang/ Fusheng Tang, University of Arkansas, Little Rock]
+
* [http://ualr.edu/research/index.php/tang/ Assistance Prof. Dr. Fusheng Tang, University of Arkansas, Little Rock]
* [http://www.uams.edu/metabolic/about_us/reis.asp/ Prof. Dr. Robert J. Shmookler Reis, University of Arkansas for Medical Sciences]
* [http://www.uams.edu/metabolic/about_us/reis.asp/ Prof. Dr. Robert J. Shmookler Reis, University of Arkansas for Medical Sciences]
== News & Literature ==
== News & Literature ==
<biblio>
<biblio>
 +
#Paper8 [http://pubs.aina.ucalgary.ca/arctic/Arctic64-4-497.pdf The Arctic Phoenix]
 +
// A wonderful long-lived sea bird, which lives at the harsh conditions of the arctic, shows little signs of senescence on sudden death, despite immense metabolic rate. http://umanitoba.ca/news/blogs/blog/2012/07/03/diving-seabird-shows-good-way-to-live-then-suddenly-die/
 +
[http://vimeo.com/28066351 Video]
#Paper7 pmid=17116322
#Paper7 pmid=17116322
// Creation of a human longevity-associated Network from homologous of different species. The nodes are very interesting.
// Creation of a human longevity-associated Network from homologous of different species. The nodes are very interesting.

Current revision

University of Liverpool Logo
University of Liverpool Logo
Exterior view of the Bioscience Building
Exterior view of the Bioscience Building

Welcome to the lab wiki of the Integrative Genomics of Ageing Group. We are a highly interdisciplinary and international team, located in the heart of Liverpool (United Kingdom) and using in silico, in vitro as well as in vivo approaches to study the biology and genetics of ageing. The group's PI is Joao Pedro de Magalhaes, hence the name Mag Lab.

Contents

About our lab

Scientists
Scientists

Useful Links For Prospective Students

Night time lapse of the Bioscience Building
Night time lapse of the Bioscience Building

Infos for Students

EZproxy
EZproxy

If you are a member of the University of Liverpool you can get off-campus access to subscription-required journals (such as Science, Nature, Cell, etc. via ezproxy.

For this purpose insert ".exproxy.liv.ac.uk." right after the top-level domain (for example: .com, .gov, .de, etc.) and login with you username and password (enable cookies in the browser to avoid repeating this).

Bioinformatics/Informatics Tools/Resources

Programming Language
Programming Language

List of Suppliers

Suppliers
Suppliers

This is a list of useful suppliers for both the lab and office, including basic equipments from hypercentrifuges to books:

People

Collaborations

News & Literature

  1. The Arctic Phoenix [Paper8]
    A wonderful long-lived sea bird, which lives at the harsh conditions of the arctic, shows little signs of senescence on sudden death, despite immense metabolic rate. http://umanitoba.ca/news/blogs/blog/2012/07/03/diving-seabird-shows-good-way-to-live-then-suddenly-die/

    Video

  2. Budovsky A, Abramovich A, Cohen R, Chalifa-Caspi V, and Fraifeld V. . pmid:17116322. PubMed HubMed [Paper7]
    Creation of a human longevity-associated Network from homologous of different species. The nodes are very interesting.

  3. Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, Tonti-Filippini J, Nery JR, Lee L, Ye Z, Ngo QM, Edsall L, Antosiewicz-Bourget J, Stewart R, Ruotti V, Millar AH, Thomson JA, Ren B, and Ecker JR. . pmid:19829295. PubMed HubMed [Paper6]
    First step to understand the methylation pattern of cells and how it alters in time.

    This is interesting especially for two aspects: The embryonal development and the ageing process

  4. Eisenberg T, Knauer H, Schauer A, Büttner S, Ruckenstuhl C, Carmona-Gutierrez D, Ring J, Schroeder S, Magnes C, Antonacci L, Fussi H, Deszcz L, Hartl R, Schraml E, Criollo A, Megalou E, Weiskopf D, Laun P, Heeren G, Breitenbach M, Grubeck-Loebenstein B, Herker E, Fahrenkrog B, Fröhlich KU, Sinner F, Tavernarakis N, Minois N, Kroemer G, and Madeo F. . pmid:19801973. PubMed HubMed [Paper5]
    Spermidine is a small molecule, just a polyamine with a very simple structure: C7H19N3

  5. Zid BM, Rogers AN, Katewa SD, Vargas MA, Kolipinski MC, Lu TA, Benzer S, and Kapahi P. . pmid:19804760. PubMed HubMed [Paper4]
    Translating Dietary Restriction into Long Life PaperFlick Supporting Documents

  6. Veatch JR, McMurray MA, Nelson ZW, and Gottschling DE. . pmid:19563757. PubMed HubMed [Paper3]
    Mitochondrial Links to Genomic Instability in Aging PaperFlick

  7. Brunet A. . pmid:19360073. PubMed HubMed [Paper2]
    Nice essay about connections of cancer, ageing and CR

  8. Kalaany NY and Sabatini DM. . pmid:19279572. PubMed HubMed [Paper1]
    I think xenografts are a very bad model of cancer formation [DW].

All Medline abstracts: PubMed HubMed

Publications

  1. Yu C, Li Y, Holmes A, Szafranski K, Faulkes CG, Coen CW, Buffenstein R, Platzer M, de Magalhães JP, and Church GM. . pmid:22073188. PubMed HubMed [Paper8]
  2. de Magalhães JP, Wuttke D, Wood SH, Plank M, and Vora C. . pmid:22090473. PubMed HubMed [Paper7]
  3. de Magalhães JP and Matsuda A. . pmid:22188222. PubMed HubMed [Paper6]
  4. Li Y and de Magalhães JP. . pmid:22205409. PubMed HubMed [Paper5]
  5. Plank M, Wuttke D, van Dam S, Clarke SA, and de Magalhães JP. . pmid:22327899. PubMed HubMed [Paper4]
  6. Wood SH, Craig T, Li Y, Merry B, and de Magalhães JP. . pmid:22555619. PubMed HubMed [Paper3]
  7. Wuttke D and de Magalhães JP. . pmid:22722495. PubMed HubMed [Paper2]
  8. Aledo JC, Valverde H, and de Magalhães JP. . pmid:22752047. PubMed HubMed [Paper1]
  9. Silva AS, Wood SH, van Dam S, Berres S, McArdle A, and de Magalhães JP. . pmid:21994229. PubMed HubMed [Paper9]
  10. Freitas AA and de Magalhães JP. . pmid:21600302. PubMed HubMed [Paper10]
  11. de Magalhães JP. . pmid:21512206. PubMed HubMed [Paper11]
  12. Freitas AA, Vasieva O, and de Magalhães JP. . pmid:21226956. PubMed HubMed [Paper12]
  13. Fuellen G, Adjaye J, de Grey A, Lepperdinger G, de Magalhães JP, Sühnel J, and Wipat A. . pmid:21204651. PubMed HubMed [Paper13]
  14. de Magalhães JP. . pmid:21182853. PubMed HubMed [Paper14]
  15. Aledo JC, Li Y, de Magalhães JP, Ruíz-Camacho M, and Pérez-Claros JA. . pmid:21108730. PubMed HubMed [Paper15]
  16. Nicholas A, de Magalhaes JP, Kraytsberg Y, Richfield EK, Levanon EY, and Khrapko K. . pmid:20538013. PubMed HubMed [Paper16]
  17. Finch CE, Morgan TE, Longo VD, and de Magalhaes JP. . pmid:20415721. PubMed HubMed [Paper17]
  18. Cevenini E, Bellavista E, Tieri P, Castellani G, Lescai F, Francesconi M, Mishto M, Santoro A, Valensin S, Salvioli S, Capri M, Zaikin A, Monti D, de Magalhães JP, and Franceschi C. . pmid:20388091. PubMed HubMed [Paper18]
  19. de Magalhães JP, Finch CE, and Janssens G. . pmid:19900591. PubMed HubMed [Paper19]
  20. de Magalhães JP and Costa J. . pmid:19522730. PubMed HubMed [Paper20]
  21. de Magalhães JP. . pmid:19418994. PubMed HubMed [Paper21]
  22. Maldonado J, Pereira T, and Estudo AMPA. . pmid:19388489. PubMed HubMed [Paper22]
  23. de Magalhães JP, Curado J, and Church GM. . pmid:19189975. PubMed HubMed [Paper23]
  24. de Magalhães JP, Budovsky A, Lehmann G, Costa J, Li Y, Fraifeld V, and Church GM. . pmid:18986374. PubMed HubMed [Paper24]
  25. de Magalhães JP and Faragher RG. . pmid:18478536. PubMed HubMed [Paper25]
  26. de Magalhães JP, Sedivy JM, Finch CE, Austad SN, and Church GM. . pmid:17595413. PubMed HubMed [Paper26]
  27. de Magalhães JP and Church GM. . pmid:17459455. PubMed HubMed [Paper27]
  28. de Magalhães JP, Costa J, and Church GM. . pmid:17339640. PubMed HubMed [Paper28]
  29. de Magalhães JP and Church GM. . pmid:16226003. PubMed HubMed [Paper29]
  30. de Magalhães JP. . pmid:16132471. PubMed HubMed [Paper30]
  31. de Magalhães JP and Church GM. . pmid:16024513. PubMed HubMed [Paper31]
  32. de Magalhães JP and Sandberg A. . pmid:15946728. PubMed HubMed [Paper32]
  33. de Magalhães JP. . pmid:15619467. PubMed HubMed [Paper33]
  34. de Magalhães JP, Costa J, and Toussaint O. . pmid:15608256. PubMed HubMed [Paper34]
  35. de Magalhães JP, Chainiaux F, de Longueville F, Mainfroid V, Migeot V, Marcq L, Remacle J, Salmon M, and Toussaint O. . pmid:15489061. PubMed HubMed [Paper35]
  36. de Magalhães JP, Cabral JA, and Magalhães D. . pmid:15466429. PubMed HubMed [Paper36]
  37. de Magalhães JP. . pmid:15383309. PubMed HubMed [Paper37]
  38. de Magalhães JP and Toussaint O. . pmid:15312299. PubMed HubMed [Paper38]
  39. de Magalhães JP and Toussaint O. . pmid:15280050. PubMed HubMed [Paper39]
  40. de Magalhães JP, Migeot V, Mainfroid V, de Longueville F, Remacle J, and Toussaint O. . pmid:15247048. PubMed HubMed [Paper40]
  41. de Magalhães JP and Toussaint O. . pmid:15177050. PubMed HubMed [Paper41]
  42. de Magalhães JP. . pmid:12766537. PubMed HubMed [Paper42]
  43. de Magalhães JP and Toussaint O. . pmid:12175477. PubMed HubMed [Paper43]
  44. de Magalhães JP, Chainiaux F, Remacle J, and Toussaint O. . pmid:12123824. PubMed HubMed [Paper44]
  45. Dumont P, Royer V, Pascal T, Dierick JF, Chainiaux F, Frippiat C, de Magalhaes JP, Eliaers F, Remacle J, and Toussaint O. . pmid:11583109. PubMed HubMed [Paper45]
  46. edited by Christine Foyer, Richard Faragher, Paul Thornalley. Redox metabolism and longevity relationships in animals and plants. New York, NY: Taylor & Francis Group, 2009. isbn:9780415419543. [Book1]
  47. isbn:9780203866740. [Book2]
All Medline abstracts: PubMed HubMed
Personal tools