Maheshri:Kinase: Difference between revisions
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'''<font size="+1">Kinase and Anneal Oligos</font>''' | '''<font size="+1">Kinase and Anneal Oligos</font>''' | ||
This protocol is designed for kinasing oligos to be used in cloning (such as creating a polylinker). Refer to the Site-directed mutagenesis protocol for | This protocol is designed for kinasing oligos to be used in cloning (such as creating a polylinker). Refer to the Site-directed mutagenesis protocol for the protocol-specific kinasing reaction conditions. | ||
#Set up kinase reaction (set up a | #Set up kinase reaction (set up a separate reaction for each oligo): | ||
#*50pmol/µl oligo 1.0 µl | #*50pmol/µl oligo 1.0 µl | ||
#*10x NEB Polynucleotide Kinase Buffer 2.5 µl | #*10x NEB Polynucleotide Kinase Buffer 2.5 µl | ||
Line 19: | Line 19: | ||
#*ddH2O (to 10 µl) | #*ddH2O (to 10 µl) | ||
#Incubate at 95°C for 5 minutes. | #Incubate at 95°C for 5 minutes. | ||
# | #Incubate at 70°C for 10 minutes in metal block (in heat block or in water bath). | ||
#Remove metal block and let reactions | #Remove metal block and let reactions slowly cool in block to room temp. (usually about an hour). |
Revision as of 13:10, 14 January 2011
Kinase and Anneal Oligos
This protocol is designed for kinasing oligos to be used in cloning (such as creating a polylinker). Refer to the Site-directed mutagenesis protocol for the protocol-specific kinasing reaction conditions.
- Set up kinase reaction (set up a separate reaction for each oligo):
- 50pmol/µl oligo 1.0 µl
- 10x NEB Polynucleotide Kinase Buffer 2.5 µl
- 10 mM ATP (made fresh in H2O) 2.5 µl
- T4 Polynucleotide Kinase 1.0 µl
- ddH2O (to 25 µl)
- Note: One can use the 10X NEB T4 Ligase Buffer to substiute PNK Buffer and ATP
- Incubate at 37°C for 30 minutes.
- Anneal Oligos:
- 5’ kinased oligo (from above) 3.0 µl
- 3’ kinased oligo (from above) 3.0 µl
- 10x NEB 2 Restriction enzyme buffer 1.0 µl
- ddH2O (to 10 µl)
- Incubate at 95°C for 5 minutes.
- Incubate at 70°C for 10 minutes in metal block (in heat block or in water bath).
- Remove metal block and let reactions slowly cool in block to room temp. (usually about an hour).