Maloof Lab:Daniele Filiault - Revision history

Dlfiliault at 08:36, 31 October 2010

Dlfiliault — Sun, 31 Oct 2010 08:36:40 GMT

←Older revision		Revision as of 08:36, 31 October 2010
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	=Daniele Filiault=		=Daniele Filiault=
	[[Image:Danielewiki.jpg\|thumb\|I even leave the lab sometimes!]]		[[Image:Danielewiki.jpg\|thumb\|I even leave the lab sometimes!]]
-	I am now a postdoctoral fellow working in [http://www.gmi.oeaw.ac.at/en/research/magnus-nordborg/ Magnus Nordborg's group] at the [http://www.gmi.oeaw.ac.at/en/home/ Gregor Mendel Institute] in Vienna, Austria. My PhD was done in [http://malooflab.openwetware.org/ Julin Maloof's Lab] at the [http://www.ucdavis.edu University of California Davis] and have a BS in General Agriculture from [http://www.cornell.edu Cornell University] and an MS in Horticulture from the [http://www.wisc.edu University of Wisconsin-Madison] where I studied cold acclimation and freezing tolerance in turfgrass species.	+	I am now a postdoctoral fellow working in [http://www.gmi.oeaw.ac.at/en/research/magnus-nordborg/ Magnus Nordborg's group] at the [http://www.gmi.oeaw.ac.at/en/home/ Gregor Mendel Institute] in Vienna, Austria. My PhD work was done in [http://malooflab.openwetware.org/ Julin Maloof's Lab] at the [http://www.ucdavis.edu University of California Davis] and have a BS in General Agriculture from [http://www.cornell.edu Cornell University] and an MS in Horticulture from the [http://www.wisc.edu University of Wisconsin-Madison] where I studied cold acclimation and freezing tolerance in turfgrass species.
	==Research==		==Research==
	[[Image:ColSA.png‎\|thumb\|Genetically identical plants grown in simulated shade (top) or sun (bottom). Cool!]]		[[Image:ColSA.png‎\|thumb\|Genetically identical plants grown in simulated shade (top) or sun (bottom). Cool!]]

Dlfiliault at 08:35, 31 October 2010

Dlfiliault — Sun, 31 Oct 2010 08:35:42 GMT

←Older revision		Revision as of 08:35, 31 October 2010
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	=Daniele Filiault=		=Daniele Filiault=
	[[Image:Danielewiki.jpg\|thumb\|I even leave the lab sometimes!]]		[[Image:Danielewiki.jpg\|thumb\|I even leave the lab sometimes!]]
-	I am now a postdoctoral fellow working in [http://www.gmi.oeaw.ac.at/en/research/magnus-nordborg/ Magnus Nordborg's group] at the [http://www.gmi.oeaw.ac.at/en/home/ Gregor Mendel Institute] in Vienna, Austria. My PhD was done in ~~the~~ [http://~~www-plb~~.~~ucdavis~~.~~edu~~/~~pbgg/ Plant Biology Graduate Group~~] at the [http://www.ucdavis.edu University of California Davis] and have a BS in General Agriculture from [http://www.cornell.edu Cornell University] and an MS in Horticulture from the [http://www.wisc.edu University of Wisconsin-Madison] where I studied cold acclimation and freezing tolerance in turfgrass species.	+	I am now a postdoctoral fellow working in [http://www.gmi.oeaw.ac.at/en/research/magnus-nordborg/ Magnus Nordborg's group] at the [http://www.gmi.oeaw.ac.at/en/home/ Gregor Mendel Institute] in Vienna, Austria. My PhD was done in [http://malooflab.openwetware.org/ Julin Maloof's Lab] at the [http://www.ucdavis.edu University of California Davis] and have a BS in General Agriculture from [http://www.cornell.edu Cornell University] and an MS in Horticulture from the [http://www.wisc.edu University of Wisconsin-Madison] where I studied cold acclimation and freezing tolerance in turfgrass species.
	==Research==		==Research==
	[[Image:ColSA.png‎\|thumb\|Genetically identical plants grown in simulated shade (top) or sun (bottom). Cool!]]		[[Image:ColSA.png‎\|thumb\|Genetically identical plants grown in simulated shade (top) or sun (bottom). Cool!]]

Dlfiliault at 08:33, 31 October 2010

Dlfiliault — Sun, 31 Oct 2010 08:33:18 GMT

←Older revision		Revision as of 08:33, 31 October 2010
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	=Daniele Filiault=		=Daniele Filiault=
	[[Image:Danielewiki.jpg\|thumb\|I even leave the lab sometimes!]]		[[Image:Danielewiki.jpg\|thumb\|I even leave the lab sometimes!]]
-	I'm a ~~fifth year graduate student~~ in the [http://www-plb.ucdavis.edu/pbgg/ Plant Biology Graduate Group] at the [http://www.ucdavis.edu University of California Davis]~~. I~~ have a BS in General Agriculture from [http://www.cornell.edu Cornell University] and an MS in Horticulture from the [http://www.wisc.edu University of Wisconsin-Madison] where I studied cold acclimation and freezing tolerance in turfgrass species.	+	I am now a postdoctoral fellow working in [http://www.gmi.oeaw.ac.at/en/research/magnus-nordborg/ Magnus Nordborg's group] at the [http://www.gmi.oeaw.ac.at/en/home/ Gregor Mendel Institute] in Vienna, Austria. My PhD was done in the [http://www-plb.ucdavis.edu/pbgg/ Plant Biology Graduate Group] at the [http://www.ucdavis.edu University of California Davis] and have a BS in General Agriculture from [http://www.cornell.edu Cornell University] and an MS in Horticulture from the [http://www.wisc.edu University of Wisconsin-Madison] where I studied cold acclimation and freezing tolerance in turfgrass species.
	==Research==		==Research==
	[[Image:ColSA.png‎\|thumb\|Genetically identical plants grown in simulated shade (top) or sun (bottom). Cool!]]		[[Image:ColSA.png‎\|thumb\|Genetically identical plants grown in simulated shade (top) or sun (bottom). Cool!]]

Dlfiliault: ugh. bring this up-to-date. sometimes people actually look at this thing...

Dlfiliault — Fri, 03 Apr 2009 08:22:16 GMT

ugh. bring this up-to-date. sometimes people actually look at this thing...

←Older revision		Revision as of 08:22, 3 April 2009
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	=Daniele Filiault=		=Daniele Filiault=
	[[Image:Danielewiki.jpg\|thumb\|I even leave the lab sometimes!]]		[[Image:Danielewiki.jpg\|thumb\|I even leave the lab sometimes!]]
-	I'm a ~~third~~ year graduate student in the [http://www-plb.ucdavis.edu/pbgg/ Plant Biology Graduate Group] at the [http://www.ucdavis.edu University of California Davis]. I have a BS in General Agriculture from [http://www.cornell.edu Cornell University] and an MS in Horticulture from the [http://www.wisc.edu University of Wisconsin-Madison] where I studied cold acclimation and freezing tolerance in turfgrass species.	+	I'm a fifth year graduate student in the [http://www-plb.ucdavis.edu/pbgg/ Plant Biology Graduate Group] at the [http://www.ucdavis.edu University of California Davis]. I have a BS in General Agriculture from [http://www.cornell.edu Cornell University] and an MS in Horticulture from the [http://www.wisc.edu University of Wisconsin-Madison] where I studied cold acclimation and freezing tolerance in turfgrass species.
	==Research==		==Research==
	[[Image:ColSA.png‎\|thumb\|Genetically identical plants grown in simulated shade (top) or sun (bottom). Cool!]]		[[Image:ColSA.png‎\|thumb\|Genetically identical plants grown in simulated shade (top) or sun (bottom). Cool!]]
-	My work ~~uses genetic approaches~~ to understand natural variation ~~in shade avoidance responses~~ in ''Arabidopsis thaliana''.	+	My dissertation work focuses on using quantitative and population genetics to understand natural variation in ''Arabidopsis thaliana'' shade avoidance responses. By integrating traditional methods (like QTL analysis) with new approaches (such as whole-genome association mapping), we have identified a number of candidate genes and naturally-occurring polymorphisms that could be underlying phenotypic variation. My current efforts are centered on validating these candidate genes as well as on refining and expanding our association mapping analyses.
-	*;Association mapping	+
-	~~:We have done an association mapping study for seedling and juvenile~~ shade avoidance ~~traits using 96 Arabidopsis thaliana ecotypes~~. ~~From this study~~, we have identified ~~over 100 intervals in the genome that are statistically associated with our measured phenotypes. We have also used~~ a candidate ~~gene approach to identify associations between these phenotypes and SNPs in~~ genes ~~previously shown to~~ be ~~involved in shade avoidance~~. ~~Currently I am working~~ on ~~functional validation of some of~~ these ~~statistical associations.~~	+
-	*;Expression QTL	+
-	~~:At this time I am doing preliminary work for an eQTL project, which will use gene expression levels~~ as ~~phenotypes in QTL analysis. Several RIL (recombinant inbred line) sets appear to be good candidates for this type of analysis~~ and ~~are in the process of being phenotyped. Once a final RIL set is chosen, microarray analysis will begin. This should happen soon!~~	+
-	*;Genetic regulatory networks	+
-	:Expression QTL data sets are especially useful tools for understanding genetic regulatory networks. Since little is known about the network underlying shade avoidance responses, this type of analysis could be especially useful in uncovering the molecular mechanisms by which plants modulate their development in response to shade.	+
-		+
	==Outside the lab==		==Outside the lab==
	Depending on the weather, I'm doing one of the following:		Depending on the weather, I'm doing one of the following:

Dlfiliault at 07:25, 27 August 2007

Dlfiliault — Mon, 27 Aug 2007 07:25:55 GMT

←Older revision		Revision as of 07:25, 27 August 2007
Line 10:		Line 10:
	:At this time I am doing preliminary work for an eQTL project, which will use gene expression levels as phenotypes in QTL analysis. Several RIL (recombinant inbred line) sets appear to be good candidates for this type of analysis and are in the process of being phenotyped. Once a final RIL set is chosen, microarray analysis will begin. This should happen soon!		:At this time I am doing preliminary work for an eQTL project, which will use gene expression levels as phenotypes in QTL analysis. Several RIL (recombinant inbred line) sets appear to be good candidates for this type of analysis and are in the process of being phenotyped. Once a final RIL set is chosen, microarray analysis will begin. This should happen soon!
	*;Genetic regulatory networks		*;Genetic regulatory networks
-	:Expression QTL data sets are especially useful tools for understanding genetic regulatory networks. Since little is known about the network underlying shade avoidance responses, this type of ~~network~~ analysis could be especially useful in uncovering the molecular mechanisms by which plants modulate their development in response to shade.	+	:Expression QTL data sets are especially useful tools for understanding genetic regulatory networks. Since little is known about the network underlying shade avoidance responses, this type of analysis could be especially useful in uncovering the molecular mechanisms by which plants modulate their development in response to shade.

	==Outside the lab==		==Outside the lab==

Dlfiliault at 07:25, 27 August 2007

Dlfiliault — Mon, 27 Aug 2007 07:25:07 GMT

←Older revision		Revision as of 07:25, 27 August 2007
Line 10:		Line 10:
	:At this time I am doing preliminary work for an eQTL project, which will use gene expression levels as phenotypes in QTL analysis. Several RIL (recombinant inbred line) sets appear to be good candidates for this type of analysis and are in the process of being phenotyped. Once a final RIL set is chosen, microarray analysis will begin. This should happen soon!		:At this time I am doing preliminary work for an eQTL project, which will use gene expression levels as phenotypes in QTL analysis. Several RIL (recombinant inbred line) sets appear to be good candidates for this type of analysis and are in the process of being phenotyped. Once a final RIL set is chosen, microarray analysis will begin. This should happen soon!
	*;Genetic regulatory networks		*;Genetic regulatory networks
-	:Expression QTL data sets are especially useful tools for understanding ~~the~~ genetic regulatory networks. Since little is known about the network underlying shade avoidance responses, this type of network analysis could be especially useful in uncovering the molecular mechanisms by which plants modulate their development in response to shade.	+	:Expression QTL data sets are especially useful tools for understanding genetic regulatory networks. Since little is known about the network underlying shade avoidance responses, this type of network analysis could be especially useful in uncovering the molecular mechanisms by which plants modulate their development in response to shade.

	==Outside the lab==		==Outside the lab==

Dlfiliault at 07:21, 27 August 2007

Dlfiliault — Mon, 27 Aug 2007 07:21:59 GMT

←Older revision		Revision as of 07:21, 27 August 2007
Line 6:		Line 6:
	My work uses genetic approaches to understand natural variation in shade avoidance responses in ''Arabidopsis thaliana''.		My work uses genetic approaches to understand natural variation in shade avoidance responses in ''Arabidopsis thaliana''.
	*;Association mapping		*;Association mapping
-	:I have done an association mapping study for seedling and juvenile shade avoidance traits using 96 Arabidopsis thaliana ecotypes. From this study, we have identified over 100 intervals in the genome that are statistically associated with our measured phenotypes. We have also used a candidate gene approach to identify associations between these phenotypes and SNPs in genes previously shown to be involved in shade avoidance. Currently I am working on functional validation of some of these statistical associations.	+	:We have done an association mapping study for seedling and juvenile shade avoidance traits using 96 Arabidopsis thaliana ecotypes. From this study, we have identified over 100 intervals in the genome that are statistically associated with our measured phenotypes. We have also used a candidate gene approach to identify associations between these phenotypes and SNPs in genes previously shown to be involved in shade avoidance. Currently I am working on functional validation of some of these statistical associations.
	*;Expression QTL		*;Expression QTL
	:At this time I am doing preliminary work for an eQTL project, which will use gene expression levels as phenotypes in QTL analysis. Several RIL (recombinant inbred line) sets appear to be good candidates for this type of analysis and are in the process of being phenotyped. Once a final RIL set is chosen, microarray analysis will begin. This should happen soon!		:At this time I am doing preliminary work for an eQTL project, which will use gene expression levels as phenotypes in QTL analysis. Several RIL (recombinant inbred line) sets appear to be good candidates for this type of analysis and are in the process of being phenotyped. Once a final RIL set is chosen, microarray analysis will begin. This should happen soon!

Dlfiliault: changes to the "research" description section

Dlfiliault — Mon, 27 Aug 2007 07:19:33 GMT

changes to the "research" description section

←Older revision		Revision as of 07:19, 27 August 2007
Line 5:		Line 5:
	[[Image:ColSA.png‎\|thumb\|Genetically identical plants grown in simulated shade (top) or sun (bottom). Cool!]]		[[Image:ColSA.png‎\|thumb\|Genetically identical plants grown in simulated shade (top) or sun (bottom). Cool!]]
	My work uses genetic approaches to understand natural variation in shade avoidance responses in ''Arabidopsis thaliana''.		My work uses genetic approaches to understand natural variation in shade avoidance responses in ''Arabidopsis thaliana''.
-	*Association mapping	+	*;Association mapping
-	*Expression QTL	+	:I have done an association mapping study for seedling and juvenile shade avoidance traits using 96 Arabidopsis thaliana ecotypes. From this study, we have identified over 100 intervals in the genome that are statistically associated with our measured phenotypes. We have also used a candidate gene approach to identify associations between these phenotypes and SNPs in genes previously shown to be involved in shade avoidance. Currently I am working on functional validation of some of these statistical associations.
-	*Genetic regulatory networks	+	*;Expression QTL
		+	:At this time I am doing preliminary work for an eQTL project, which will use gene expression levels as phenotypes in QTL analysis. Several RIL (recombinant inbred line) sets appear to be good candidates for this type of analysis and are in the process of being phenotyped. Once a final RIL set is chosen, microarray analysis will begin. This should happen soon!
		+	*;Genetic regulatory networks
		+	:Expression QTL data sets are especially useful tools for understanding the genetic regulatory networks. Since little is known about the network underlying shade avoidance responses, this type of network analysis could be especially useful in uncovering the molecular mechanisms by which plants modulate their development in response to shade.

	==Outside the lab==		==Outside the lab==

Dlfiliault: added plant pic

Dlfiliault — Mon, 27 Aug 2007 06:56:48 GMT

added plant pic

←Older revision		Revision as of 06:56, 27 August 2007
Line 1:		Line 1:
	=Daniele Filiault=		=Daniele Filiault=
-	I'm a third year graduate student in the [http://www-plb.ucdavis.edu/pbgg/ Plant Biology Graduate Group] at the [http://www.ucdavis.edu University of California Davis]. I have a BS in General Agriculture from [http://www.cornell.edu Cornell University] and an MS in Horticulture from the [http://www.wisc.edu University of Wisconsin-Madison] where I studied cold acclimation and freezing tolerance in turfgrass species.
	[[Image:Danielewiki.jpg\|thumb\|I even leave the lab sometimes!]]		[[Image:Danielewiki.jpg\|thumb\|I even leave the lab sometimes!]]
		+	I'm a third year graduate student in the [http://www-plb.ucdavis.edu/pbgg/ Plant Biology Graduate Group] at the [http://www.ucdavis.edu University of California Davis]. I have a BS in General Agriculture from [http://www.cornell.edu Cornell University] and an MS in Horticulture from the [http://www.wisc.edu University of Wisconsin-Madison] where I studied cold acclimation and freezing tolerance in turfgrass species.
	==Research==		==Research==
		+	[[Image:ColSA.png‎\|thumb\|Genetically identical plants grown in simulated shade (top) or sun (bottom). Cool!]]
	My work uses genetic approaches to understand natural variation in shade avoidance responses in ''Arabidopsis thaliana''.		My work uses genetic approaches to understand natural variation in shade avoidance responses in ''Arabidopsis thaliana''.
	*Association mapping		*Association mapping

Dlfiliault: more formatting stuff

Dlfiliault — Mon, 27 Aug 2007 06:42:51 GMT

more formatting stuff

←Older revision		Revision as of 06:42, 27 August 2007
Line 14:		Line 14:
	*Attending a "mopey indie show" in [http://daviswiki.org/ Davis], [http://ww3.newsreview.com/issues/static/music/gigs.asp Sacramento], or [http://music.sfweekly.com/ the Bay Area].		*Attending a "mopey indie show" in [http://daviswiki.org/ Davis], [http://ww3.newsreview.com/issues/static/music/gigs.asp Sacramento], or [http://music.sfweekly.com/ the Bay Area].
	==Contact Info==		==Contact Info==
-	dlfiliault (at) ucdavis.edu	+	*dlfiliault (at) ucdavis (dot) edu
		+
		+	*Lab location: 2119 Life Sciences
		+	*Lab phone: (530) 752-8086
		+
		+	*Mailing address:
		+	:Section of Plant Biology<br>
		+	:One Shields Avenue
		+	:University of California Davis
		+	:Davis, CA 95616


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